Wall clock time and date at job start Sun Mar 29 2020 21:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00067 * 2 1 4 4 H 1.48497 * 109.47004 * 269.99687 * 3 2 1 5 5 H 1.48503 * 109.47089 * 29.99698 * 3 2 1 6 6 H 1.48499 * 109.47353 * 149.99191 * 3 2 1 7 7 C 1.37876 * 120.00239 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99641 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00179 * 180.02562 * 7 2 1 10 10 N 1.46909 * 109.47050 * 180.02562 * 9 7 2 11 11 C 1.48528 * 110.99853 * 58.49611 * 10 9 7 12 12 C 1.54934 * 103.22619 * 159.71814 * 11 10 9 13 13 C 1.54590 * 102.92322 * 322.58788 * 12 11 10 14 14 C 1.47896 * 110.99973 * 175.89316 * 10 9 7 15 15 H 1.09000 * 110.08053 * 333.60454 * 14 10 9 16 16 C 1.53004 * 109.91614 * 94.80283 * 14 10 9 17 17 C 1.52994 * 109.47109 * 182.58150 * 16 14 10 18 18 C 1.53004 * 109.47109 * 179.97438 * 17 16 14 19 19 C 1.52993 * 109.47099 * 299.99865 * 18 17 16 20 20 C 1.52996 * 109.47395 * 60.00053 * 19 18 17 21 21 C 1.53003 * 109.47097 * 302.57953 * 16 14 10 22 22 H 0.97001 * 120.00066 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.46937 * 60.00903 * 9 7 2 24 24 H 1.08993 * 109.47246 * 300.00239 * 9 7 2 25 25 H 1.09000 * 110.66890 * 41.28858 * 11 10 9 26 26 H 1.09004 * 110.81746 * 278.22400 * 11 10 9 27 27 H 1.09004 * 110.72649 * 204.22771 * 12 11 10 28 28 H 1.09004 * 110.72299 * 80.94772 * 12 11 10 29 29 H 1.08994 * 110.31137 * 263.03639 * 13 12 11 30 30 H 1.09005 * 110.39652 * 140.91341 * 13 12 11 31 31 H 1.08994 * 109.46889 * 62.57739 * 16 14 10 32 32 H 1.09007 * 109.47371 * 299.99895 * 17 16 14 33 33 H 1.09003 * 109.47720 * 59.99800 * 17 16 14 34 34 H 1.08999 * 109.47065 * 60.00297 * 18 17 16 35 35 H 1.08999 * 109.46790 * 179.97438 * 18 17 16 36 36 H 1.09008 * 109.47270 * 300.00133 * 19 18 17 37 37 H 1.09002 * 109.47297 * 180.02562 * 19 18 17 38 38 H 1.08996 * 109.47528 * 180.02562 * 20 19 18 39 39 H 1.08998 * 109.47171 * 59.99352 * 20 19 18 40 40 H 1.08994 * 109.47101 * 300.00227 * 21 16 14 41 41 H 1.09005 * 109.46774 * 59.99996 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 3.4959 -3.3221 -1.1816 12 6 4.4856 -4.5079 -1.3046 13 6 5.8400 -3.8690 -0.9209 14 6 5.4764 -2.6197 -0.0973 15 1 5.8428 -1.7243 -0.5995 16 6 6.0893 -2.7205 1.3009 17 6 7.6152 -2.6969 1.1918 18 6 8.2282 -2.7971 2.5901 19 6 7.7593 -1.6133 3.4384 20 6 6.2334 -1.6368 3.5476 21 6 5.6205 -1.5370 2.1498 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6801 0.8912 24 1 3.8752 -0.6804 -0.8888 25 1 3.5325 -2.6966 -2.0735 26 1 2.4823 -3.6834 -1.0080 27 1 4.5123 -4.8835 -2.3276 28 1 4.2229 -5.3034 -0.6073 29 1 6.3914 -3.5843 -1.8169 30 1 6.4292 -4.5607 -0.3187 31 1 5.7729 -3.6520 1.7700 32 1 7.9493 -3.5400 0.5870 33 1 7.9317 -1.7653 0.7226 34 1 7.9119 -3.7285 3.0596 35 1 9.3153 -2.7807 2.5122 36 1 8.0756 -0.6818 2.9688 37 1 8.1963 -1.6844 4.4344 38 1 5.8993 -0.7932 4.1516 39 1 5.9170 -2.5682 4.0171 40 1 5.9368 -0.6054 1.6807 41 1 4.5333 -1.5538 2.2276 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134012677.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:34 Heat of formation + Delta-G solvation = -23.749383 kcal Electronic energy + Delta-G solvation = -18035.747995 eV Core-core repulsion = 15528.067371 eV Total energy + Delta-G solvation = -2507.680625 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.38070 -37.05996 -33.12816 -31.44919 -31.36035 -30.23344 -26.95695 -26.70507 -22.83265 -22.45937 -21.36782 -20.07362 -19.40571 -19.31458 -16.61141 -15.78370 -15.24385 -14.48534 -14.05156 -14.01267 -13.83601 -13.47540 -13.08071 -12.82714 -12.52511 -12.33152 -11.87819 -11.78118 -11.46218 -11.21569 -10.98303 -10.89531 -10.72578 -10.65973 -10.52713 -10.31472 -10.09449 -10.03248 -9.88987 -9.62976 -9.54153 -9.01473 -8.55306 -7.41266 -6.03894 -4.00727 3.28574 3.36425 3.38983 4.43225 4.70416 4.87944 4.99069 5.09637 5.19518 5.25900 5.29393 5.45599 5.54106 5.57206 5.71492 5.78516 5.80481 5.82658 5.84706 5.98130 6.06085 6.10872 6.20541 6.21636 6.29581 6.35431 6.35736 6.45231 6.55509 6.59099 6.66458 6.72634 6.82644 6.88522 6.98291 7.10127 7.59920 7.97234 8.03411 8.67648 9.04379 9.58407 11.09288 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.021412 B = 0.008747 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.379527 B = 3200.190999 C = 4133.973555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.872 3.128 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.510 4.510 8 H 0.080 0.920 9 C 0.147 3.853 10 N -0.500 5.500 11 C 0.053 3.947 12 C -0.127 4.127 13 C -0.124 4.124 14 C 0.065 3.935 15 H 0.040 0.960 16 C -0.063 4.063 17 C -0.116 4.116 18 C -0.116 4.116 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.119 4.119 22 H 0.263 0.737 23 H 0.041 0.959 24 H -0.020 1.020 25 H 0.036 0.964 26 H 0.081 0.919 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.478 -5.639 2.326 16.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.700 3.300 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.548 4.548 8 H 0.098 0.902 9 C 0.020 3.980 10 N -0.223 5.223 11 C -0.075 4.075 12 C -0.165 4.165 13 C -0.162 4.162 14 C -0.045 4.045 15 H 0.058 0.942 16 C -0.083 4.083 17 C -0.154 4.154 18 C -0.153 4.153 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.157 4.157 22 H 0.073 0.927 23 H 0.059 0.941 24 H -0.002 1.002 25 H 0.055 0.945 26 H 0.099 0.901 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 15.127 -5.731 2.817 16.420 hybrid contribution 0.612 1.505 -0.834 1.826 sum 15.738 -4.227 1.984 16.416 Atomic orbital electron populations 1.69894 1.06108 1.26760 1.51259 1.24894 0.94705 0.98781 0.94888 0.86900 0.80505 0.84187 0.78446 1.20467 1.21172 1.19012 1.21077 0.88853 0.94708 1.50176 0.90224 1.20534 0.96950 0.85068 0.95409 1.64583 1.02993 1.16152 1.38617 1.22967 0.98786 0.93443 0.92283 1.22538 0.95194 0.98513 1.00297 1.22448 0.97544 0.97237 0.99020 1.22415 0.90931 0.96348 0.94756 0.94152 1.21038 0.92910 0.99245 0.95058 1.21636 0.95915 1.01401 0.96413 1.21495 0.99186 0.98575 0.96066 1.21543 0.96541 0.98435 0.99124 1.21538 0.94647 1.01490 0.97937 1.21747 1.02401 0.97459 0.94048 0.92725 0.94093 1.00247 0.94519 0.90060 0.92115 0.91370 0.92476 0.91511 0.90989 0.92257 0.92491 0.92195 0.92714 0.92411 0.92745 0.92489 0.92193 0.93035 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.87 21.75 27.47 -169.99 -4.67 17.08 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.51 -14.53 9.18 -34.44 -0.32 -14.85 16 8 H 0.08 2.46 7.11 -52.48 -0.37 2.09 16 9 C 0.15 3.58 3.16 -4.97 -0.02 3.57 16 10 N -0.50 -10.47 4.59 -224.01 -1.03 -11.50 16 11 C 0.05 1.04 5.71 -1.90 -0.01 1.03 16 12 C -0.13 -1.95 7.06 -24.88 -0.18 -2.12 16 13 C -0.12 -1.80 6.01 -25.38 -0.15 -1.96 16 14 C 0.06 1.11 2.17 -66.65 -0.14 0.97 16 15 H 0.04 0.74 7.68 -51.93 -0.40 0.34 16 16 C -0.06 -0.97 1.77 -90.62 -0.16 -1.13 16 17 C -0.12 -1.45 5.01 -26.73 -0.13 -1.59 16 18 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 19 C -0.12 -1.40 5.92 -26.74 -0.16 -1.56 16 20 C -0.12 -1.63 5.92 -26.76 -0.16 -1.79 16 21 C -0.12 -1.98 3.85 -26.75 -0.10 -2.08 16 22 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 23 H 0.04 1.00 4.30 -51.93 -0.22 0.78 16 24 H -0.02 -0.50 7.41 -51.93 -0.38 -0.89 16 25 H 0.04 0.75 8.01 -51.93 -0.42 0.33 16 26 H 0.08 1.71 7.36 -51.93 -0.38 1.33 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.86 6.76 -51.93 -0.35 0.51 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 0.68 6.83 -51.93 -0.35 0.33 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.89 8.04 -51.93 -0.42 0.47 16 41 H 0.09 1.75 5.93 -51.93 -0.31 1.44 16 LS Contribution 301.23 15.07 4.54 4.54 Total: -1.00 -29.61 301.23 -9.60 -39.20 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -7.43 Total: -1.27 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -1.78 Total: -21.06 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: -0.25 Total: -38.50 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.61 -9.60 -39.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134012677.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.455 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds