Wall clock time and date at job start Sun Mar 29 2020 22:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47507 * 2 1 4 4 H 1.09000 * 110.59558 * 302.80580 * 3 2 1 5 5 C 1.54937 * 110.66613 * 179.61475 * 3 2 1 6 6 C 1.54600 * 102.92060 * 204.15059 * 5 3 2 7 7 C 1.53993 * 105.13626 * 21.95893 * 6 5 3 8 8 H 1.09005 * 109.91554 * 241.87104 * 7 6 5 9 9 C 1.53001 * 110.07884 * 120.67343 * 7 6 5 10 10 N 1.47892 * 107.06124 * 1.22311 * 7 6 5 11 11 C 1.46900 * 111.00380 * 214.15319 * 10 7 6 12 12 C 1.53007 * 109.46936 * 42.97512 * 11 10 7 13 13 C 1.50704 * 115.54604 * 57.11212 * 12 11 10 14 14 H 1.07993 * 120.00445 * 268.58705 * 13 12 11 15 15 C 1.37884 * 119.99915 * 88.58661 * 13 12 11 16 16 N 1.31511 * 119.99961 * 180.27234 * 15 13 12 17 17 Si 1.86797 * 119.99787 * 0.26947 * 15 13 12 18 18 H 1.48499 * 109.47092 * 92.16238 * 17 15 13 19 19 H 1.48500 * 109.47355 * 212.15716 * 17 15 13 20 20 H 1.48500 * 109.47458 * 332.16126 * 17 15 13 21 21 C 1.52997 * 117.50239 * 271.44489 * 12 11 10 22 22 C 1.52997 * 117.50186 * 202.78100 * 12 11 10 23 23 H 1.08992 * 109.47693 * 164.56060 * 1 2 3 24 24 H 1.09004 * 109.46864 * 284.55902 * 1 2 3 25 25 H 1.09001 * 109.46917 * 44.55240 * 1 2 3 26 26 H 1.09000 * 109.47151 * 120.00773 * 2 1 3 27 27 H 1.09008 * 109.46720 * 239.99789 * 2 1 3 28 28 H 1.09000 * 110.72784 * 322.50957 * 5 3 2 29 29 H 1.09005 * 110.72162 * 85.79796 * 5 3 2 30 30 H 1.09003 * 110.30662 * 263.04506 * 6 5 3 31 31 H 1.08993 * 110.30716 * 140.87486 * 6 5 3 32 32 H 1.09001 * 109.46971 * 297.40412 * 9 7 6 33 33 H 1.08993 * 109.47811 * 57.40454 * 9 7 6 34 34 H 1.09007 * 109.47148 * 177.40998 * 9 7 6 35 35 H 1.09000 * 109.47543 * 162.97571 * 11 10 7 36 36 H 1.08996 * 109.47395 * 282.97802 * 11 10 7 37 37 H 0.96999 * 119.99661 * 180.02562 * 16 15 13 38 38 H 1.09001 * 117.49212 * 359.97438 * 21 12 11 39 39 H 1.08997 * 117.49746 * 145.01686 * 21 12 11 40 40 H 1.08996 * 117.49840 * 214.97774 * 22 12 11 41 41 H 1.09005 * 117.49540 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6468 1.9882 -0.8576 5 6 3.5891 1.4747 0.0097 6 6 3.9022 2.8579 0.6252 7 6 2.6351 3.2450 1.4100 8 1 2.2052 4.1566 0.9948 9 6 2.9756 3.4551 2.8867 10 7 1.6780 2.1265 1.2677 11 6 0.2949 2.6195 1.2234 12 6 0.2229 3.8565 0.3257 13 6 0.7085 3.6629 -1.0878 14 1 1.7416 3.8572 -1.3353 15 6 -0.1663 3.2377 -2.0651 16 7 0.2586 3.0636 -3.2974 17 14 -1.9550 2.9089 -1.6386 18 1 -2.7538 4.1387 -1.8724 19 1 -2.4742 1.8115 -2.4938 20 1 -2.0591 2.5150 -0.2106 21 6 0.4715 5.2181 0.9778 22 6 -0.9429 4.8226 0.5461 23 1 -0.3634 -0.9905 -0.2736 24 1 -0.3633 0.2583 0.9947 25 1 -0.3633 0.7323 -0.7210 26 1 1.8934 -0.5140 0.8899 27 1 1.8933 -0.5139 -0.8901 28 1 3.9877 0.6754 0.6345 29 1 3.9827 1.4057 -1.0044 30 1 4.0973 3.5866 -0.1617 31 1 4.7571 2.7880 1.2976 32 1 3.3416 2.5205 3.3117 33 1 3.7456 4.2212 2.9767 34 1 2.0820 3.7731 3.4240 35 1 -0.3555 1.8418 0.8230 36 1 -0.0298 2.8820 2.2302 37 1 -0.3569 2.7649 -3.9850 38 1 0.6859 5.2326 2.0464 39 1 0.9859 5.9739 0.3843 40 1 -1.3583 5.3184 -0.3311 41 1 -1.6588 4.5766 1.3304 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136158773.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:04 Heat of formation + Delta-G solvation = 17.893208 kcal Electronic energy + Delta-G solvation = -19078.977243 eV Core-core repulsion = 16573.102377 eV Total energy + Delta-G solvation = -2505.874866 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.98534 -37.75577 -34.82709 -34.14355 -32.39175 -30.77840 -27.95689 -27.10452 -25.54330 -23.64906 -23.00794 -21.21102 -21.06410 -19.90276 -18.38977 -16.94371 -16.83228 -15.89404 -15.60964 -15.19937 -14.86180 -14.68580 -14.32729 -14.01058 -13.82540 -13.56482 -13.23561 -13.12118 -12.76458 -12.66095 -12.53785 -12.29698 -12.19136 -11.99242 -11.85102 -11.51824 -11.38833 -11.16475 -11.10636 -11.04988 -10.71906 -10.55279 -10.00340 -8.91172 -8.25000 -6.17712 1.31252 1.37955 1.47744 2.37406 3.08011 3.17855 3.50966 3.92557 4.05903 4.17749 4.29993 4.37585 4.41743 4.46098 4.46902 4.60628 4.70993 4.80832 4.83365 4.87120 4.91358 4.97946 5.02450 5.07595 5.14106 5.18498 5.21961 5.26719 5.29197 5.37164 5.45701 5.48173 5.49766 5.54221 5.72295 5.76872 5.96085 6.31611 6.43772 6.60082 6.76473 7.38347 8.88996 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.021905 B = 0.013369 C = 0.011034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.942299 B = 2093.939493 C = 2537.093994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.095 4.095 3 C 0.023 3.977 4 H 0.095 0.905 5 C -0.113 4.113 6 C -0.118 4.118 7 C 0.038 3.962 8 H 0.069 0.931 9 C -0.121 4.121 10 N -0.488 5.488 11 C 0.061 3.939 12 C -0.041 4.041 13 C -0.453 4.453 14 H 0.040 0.960 15 C 0.035 3.965 16 N -0.940 5.940 17 Si 0.918 3.082 18 H -0.286 1.286 19 H -0.303 1.303 20 H -0.231 1.231 21 C -0.162 4.162 22 C -0.205 4.205 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.031 0.969 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.262 0.738 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.402 -2.605 10.681 11.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.133 4.133 3 C -0.085 4.085 4 H 0.112 0.888 5 C -0.151 4.151 6 C -0.156 4.156 7 C -0.070 4.070 8 H 0.087 0.913 9 C -0.178 4.178 10 N -0.211 5.211 11 C -0.067 4.067 12 C -0.043 4.043 13 C -0.491 4.491 14 H 0.058 0.942 15 C -0.163 4.163 16 N -0.580 5.580 17 Si 0.746 3.254 18 H -0.213 1.213 19 H -0.230 1.230 20 H -0.154 1.154 21 C -0.199 4.199 22 C -0.243 4.243 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.050 0.950 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.117 0.883 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.392 -3.027 10.976 11.634 hybrid contribution -1.036 0.699 -1.451 1.915 sum 1.356 -2.327 9.525 9.899 Atomic orbital electron populations 1.21974 0.97139 1.00655 1.01254 1.21298 0.95221 0.95768 1.01036 1.23558 0.94559 0.95334 0.95039 0.88797 1.22388 0.95615 0.97454 0.99608 1.22333 0.98015 0.96490 0.98747 1.22682 0.92394 0.95382 0.96549 0.91289 1.21644 1.00674 1.01257 0.94268 1.64977 1.01497 1.22160 1.32447 1.22343 0.91923 0.95732 0.96747 1.20099 0.99005 0.89897 0.95322 1.20098 0.95578 1.42761 0.90627 0.94182 1.25467 1.01466 0.95000 0.94409 1.70007 1.36763 1.48719 1.02544 0.86236 0.81915 0.77017 0.80258 1.21278 1.23050 1.15381 1.22836 0.97868 0.99517 0.99700 1.23000 0.92060 1.07072 1.02139 0.92224 0.91700 0.94953 0.91114 0.92743 0.90587 0.93079 0.93940 0.90057 0.92401 0.91894 0.93331 0.90201 0.92014 0.92920 0.88265 0.90872 0.91534 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.48 8.28 71.98 0.60 -4.88 16 2 C -0.10 -3.35 5.68 30.59 0.17 -3.17 16 3 C 0.02 0.90 2.21 45.26 0.10 1.00 16 4 H 0.09 4.63 3.92 -2.39 -0.01 4.62 16 5 C -0.11 -3.92 6.50 31.80 0.21 -3.71 16 6 C -0.12 -3.95 6.57 31.47 0.21 -3.74 16 7 C 0.04 1.32 2.51 45.06 0.11 1.44 16 8 H 0.07 2.69 3.64 -2.38 -0.01 2.68 16 9 C -0.12 -3.34 9.33 71.98 0.67 -2.67 16 10 N -0.49 -18.01 4.85 -833.51 -4.04 -22.05 16 11 C 0.06 2.38 5.07 86.31 0.44 2.81 16 12 C -0.04 -1.76 0.05 -52.93 0.00 -1.76 16 13 C -0.45 -23.50 5.59 25.60 0.14 -23.36 16 14 H 0.04 2.37 7.81 -2.91 -0.02 2.35 16 15 C 0.03 1.89 5.17 84.66 0.44 2.33 16 16 N -0.94 -55.98 13.96 21.45 0.30 -55.69 16 17 Si 0.92 43.55 22.79 68.60 1.56 45.12 16 18 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 19 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 20 H -0.23 -9.95 5.70 99.48 0.57 -9.38 16 21 C -0.16 -6.12 7.54 30.62 0.23 -5.89 16 22 C -0.20 -8.16 7.43 30.62 0.23 -7.94 16 23 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.06 2.20 6.41 -2.39 -0.02 2.19 16 25 H 0.03 1.35 5.21 -2.39 -0.01 1.34 16 26 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.08 2.32 8.05 -2.39 -0.02 2.30 16 29 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.08 2.27 7.69 -2.39 -0.02 2.25 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.08 3.23 2.39 -2.39 -0.01 3.23 16 36 H 0.06 2.19 8.11 -2.39 -0.02 2.17 16 37 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 38 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 39 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 40 H 0.07 2.88 7.00 -2.39 -0.02 2.87 16 41 H 0.10 3.34 8.14 -2.38 -0.02 3.32 16 Total: -1.00 -57.46 291.56 2.21 -55.25 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.85 Total: 26.92 kcal Atomic # 6 Polarization: -53.09 SS G_CDS: 3.54 Total: -49.55 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -3.74 Total: -77.74 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.56 Total: 45.12 kcal Total: -57.46 2.21 -55.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136158773.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.140 kcal (2) G-P(sol) polarization free energy of solvation -57.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds