Wall clock time and date at job start Sun Mar 29 2020 21:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.46885 * 2 1 4 4 C 1.36939 * 120.00110 * 263.41048 * 3 2 1 5 5 H 1.07995 * 120.00321 * 193.84479 * 4 3 2 6 6 C 1.38814 * 119.99782 * 13.83588 * 4 3 2 7 7 N 1.31619 * 120.00194 * 14.17098 * 6 4 3 8 8 Si 1.86798 * 120.00049 * 194.17273 * 6 4 3 9 9 H 1.48503 * 109.47198 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47303 * 119.99994 * 8 6 4 11 11 H 1.48502 * 109.47184 * 239.99833 * 8 6 4 12 12 C 1.46498 * 120.00304 * 83.13032 * 3 2 1 13 13 C 1.50701 * 109.47174 * 95.40881 * 12 3 2 14 14 C 1.39870 * 126.03819 * 96.04985 * 13 12 3 15 15 C 1.50703 * 125.90023 * 0.02562 * 14 13 12 16 16 N 1.30839 * 108.20279 * 179.97438 * 14 13 12 17 17 N 1.40090 * 108.20334 * 0.02562 * 16 14 13 18 18 C 1.46502 * 126.03584 * 179.97438 * 17 16 14 19 19 C 1.34947 * 107.92540 * 359.75899 * 17 16 14 20 20 C 1.50694 * 126.12682 * 180.24390 * 19 17 16 21 21 H 1.09000 * 109.47391 * 52.98639 * 1 2 3 22 22 H 1.09007 * 109.47342 * 172.99059 * 1 2 3 23 23 H 1.09005 * 109.47351 * 292.98663 * 1 2 3 24 24 H 1.09000 * 109.47194 * 239.99918 * 2 1 3 25 25 H 1.09001 * 109.46869 * 119.99845 * 2 1 3 26 26 H 0.97000 * 119.99953 * 180.02562 * 7 6 4 27 27 H 1.09009 * 109.47300 * 215.40631 * 12 3 2 28 28 H 1.09001 * 109.47080 * 335.41140 * 12 3 2 29 29 H 1.09002 * 109.47219 * 90.00065 * 15 14 13 30 30 H 1.09004 * 109.46811 * 209.99489 * 15 14 13 31 31 H 1.09000 * 109.47138 * 329.99811 * 15 14 13 32 32 H 1.09001 * 109.46690 * 89.97430 * 18 17 16 33 33 H 1.08999 * 109.46907 * 209.97080 * 18 17 16 34 34 H 1.08999 * 109.47418 * 329.97989 * 18 17 16 35 35 H 1.08997 * 109.47197 * 275.09295 * 20 19 17 36 36 H 1.08996 * 109.47430 * 35.09566 * 20 19 17 37 37 H 1.09003 * 109.47132 * 155.09306 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3748 1.9814 -1.1781 5 1 2.9380 2.9028 -1.1659 6 6 2.0124 1.4053 -2.3880 7 7 1.1037 0.4536 -2.4178 8 14 2.8145 1.9808 -3.9738 9 1 3.7957 3.0537 -3.6713 10 1 3.5117 0.8391 -4.6186 11 1 1.7733 2.5075 -4.8923 12 6 2.1193 2.1224 1.2596 13 6 3.5243 2.0152 1.7942 14 6 4.5479 2.9507 1.6113 15 6 4.4371 4.2433 0.8445 16 7 5.6180 2.5101 2.2218 17 7 5.3087 1.2783 2.8129 18 6 6.2246 0.4429 3.5937 19 6 4.0169 0.9994 2.5401 20 6 3.2594 -0.2253 2.9842 21 1 -0.3634 0.6186 -0.8206 22 1 -0.3634 -1.0200 -0.1254 23 1 -0.3634 0.4013 0.9461 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 0.8508 0.0509 -3.2632 27 1 1.8761 3.1706 1.0849 28 1 1.4217 1.7034 1.9847 29 1 4.1210 5.0396 1.5184 30 1 5.4067 4.4948 0.4144 31 1 3.7037 4.1304 0.0461 32 1 6.1622 0.7208 4.6458 33 1 5.9485 -0.6052 3.4778 34 1 7.2443 0.5916 3.2385 35 1 3.4368 -1.0376 2.2795 36 1 3.6001 -0.5236 3.9757 37 1 2.1934 -0.0005 3.0188 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155002278.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:57 Heat of formation + Delta-G solvation = 98.998700 kcal Electronic energy + Delta-G solvation = -17713.734025 eV Core-core repulsion = 15107.835813 eV Total energy + Delta-G solvation = -2605.898212 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.73261 -35.94704 -33.69998 -32.20336 -30.59202 -29.54474 -28.92543 -27.04543 -25.50086 -24.09494 -22.79195 -20.40088 -18.93135 -18.78027 -16.40855 -15.87558 -15.43759 -14.78180 -13.77197 -13.55026 -13.47998 -13.11213 -13.00336 -12.76196 -12.62245 -12.34656 -11.86955 -11.80184 -11.48881 -11.43801 -11.26784 -11.07730 -10.77205 -10.47321 -10.36751 -9.97556 -9.71682 -9.53544 -9.28998 -8.46859 -8.28532 -7.61440 -6.64926 -5.57901 -2.98316 2.40788 2.99555 3.40526 3.45324 3.52962 3.54732 4.62267 4.84902 5.15091 5.28423 5.40754 5.47980 5.51512 5.55655 5.78580 5.84005 5.89727 6.07681 6.13865 6.16432 6.29910 6.52746 6.68657 6.69631 6.80960 7.00227 7.03791 7.15268 7.29238 7.36818 7.62806 7.83343 7.94601 8.20046 8.34169 8.54846 9.40479 10.02511 10.47881 11.43120 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.023596 B = 0.009153 C = 0.007606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.370686 B = 3058.377584 C = 3680.535137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.165 3.835 3 N -0.591 5.591 4 C -0.229 4.229 5 H 0.072 0.928 6 C -0.011 4.011 7 N -0.908 5.908 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.293 1.293 11 H -0.293 1.293 12 C 0.219 3.781 13 C -0.220 4.220 14 C 0.088 3.912 15 C -0.074 4.074 16 N -0.316 5.316 17 N -0.387 5.387 18 C 0.109 3.891 19 C 0.076 3.924 20 C -0.083 4.083 21 H 0.083 0.917 22 H 0.019 0.981 23 H 0.003 0.997 24 H 0.091 0.909 25 H 0.000 1.000 26 H 0.247 0.753 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.596 -0.417 10.816 11.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.041 3.959 3 N -0.312 5.312 4 C -0.359 4.359 5 H 0.090 0.910 6 C -0.207 4.207 7 N -0.556 5.556 8 Si 0.730 3.270 9 H -0.206 1.206 10 H -0.220 1.220 11 H -0.221 1.221 12 C 0.091 3.909 13 C -0.233 4.233 14 C -0.078 4.078 15 C -0.132 4.132 16 N -0.138 5.138 17 N -0.171 5.171 18 C -0.033 4.033 19 C -0.050 4.050 20 C -0.141 4.141 21 H 0.102 0.898 22 H 0.038 0.962 23 H 0.022 0.978 24 H 0.109 0.891 25 H 0.018 0.982 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.848 -0.365 11.023 12.484 hybrid contribution -0.232 -0.105 -1.063 1.093 sum 5.616 -0.470 9.960 11.444 Atomic orbital electron populations 1.22258 0.99571 0.98970 0.99120 1.20847 0.92072 0.84827 0.98200 1.44135 1.75288 1.10434 1.01295 1.19369 1.26531 1.06383 0.83567 0.91020 1.24774 0.98620 0.99899 0.97385 1.70144 1.31833 1.29709 1.23899 0.86251 0.78811 0.77753 0.84228 1.20558 1.22040 1.22071 1.19010 0.87942 0.96071 0.87867 1.21025 1.01179 0.95473 1.05643 1.22123 0.91006 0.97529 0.97183 1.20234 1.03037 0.90923 0.99024 1.77144 1.23232 0.96151 1.17323 1.48163 1.08526 1.16977 1.43475 1.21619 0.93788 0.93358 0.94521 1.20737 0.85334 0.98266 1.00680 1.20395 1.00153 0.93529 1.00028 0.89783 0.96156 0.97769 0.89137 0.98165 0.94228 0.93283 0.93862 0.91425 0.91811 0.89253 0.91751 0.90199 0.90019 0.90568 0.92350 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.53 37.16 0.35 -2.86 16 2 C 0.17 3.96 5.56 -4.04 -0.02 3.94 16 3 N -0.59 -14.47 2.53 -174.61 -0.44 -14.91 16 4 C -0.23 -6.14 9.73 -15.06 -0.15 -6.29 16 5 H 0.07 1.89 5.94 -52.49 -0.31 1.58 16 6 C -0.01 -0.31 5.11 -17.43 -0.09 -0.40 16 7 N -0.91 -25.46 8.23 55.49 0.46 -25.00 16 8 Si 0.90 22.04 29.58 -169.99 -5.03 17.01 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 C 0.22 4.60 5.63 -5.19 -0.03 4.57 16 13 C -0.22 -4.43 5.65 -105.05 -0.59 -5.02 16 14 C 0.09 1.75 7.22 -82.40 -0.59 1.15 16 15 C -0.07 -1.26 10.06 36.01 0.36 -0.90 16 16 N -0.32 -6.25 12.58 33.67 0.42 -5.83 16 17 N -0.39 -6.75 4.01 -63.89 -0.26 -7.01 16 18 C 0.11 1.30 11.16 59.85 0.67 1.97 16 19 C 0.08 1.37 6.93 -82.27 -0.57 0.80 16 20 C -0.08 -1.19 8.42 36.00 0.30 -0.89 16 21 H 0.08 2.21 6.53 -51.93 -0.34 1.87 16 22 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 23 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 24 H 0.09 2.47 5.84 -51.93 -0.30 2.17 16 25 H 0.00 0.01 5.87 -51.93 -0.30 -0.30 16 26 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 27 H 0.05 1.02 7.54 -51.92 -0.39 0.63 16 28 H 0.04 0.85 7.16 -51.93 -0.37 0.48 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.09 1.65 5.80 -51.93 -0.30 1.35 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.78 7.80 -51.93 -0.40 0.38 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 1.12 7.63 -51.93 -0.40 0.72 16 36 H 0.06 0.66 7.99 -51.93 -0.42 0.24 16 37 H 0.08 1.23 6.83 -51.93 -0.35 0.88 16 LS Contribution 295.35 15.07 4.45 4.45 Total: -1.00 -31.04 295.35 -6.32 -37.36 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -5.57 Total: -2.15 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -0.36 Total: -3.94 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.18 Total: -52.74 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.04 -6.32 -37.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155002278.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.361 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds