Wall clock time and date at job start Sun Mar 29 2020 21:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47035 * 2 1 4 4 N 1.40082 * 126.03717 * 90.02768 * 3 2 1 5 5 C 1.30834 * 108.20624 * 180.02562 * 4 3 2 6 6 C 1.50702 * 125.89895 * 180.02562 * 5 4 3 7 7 C 1.39874 * 108.20333 * 359.97438 * 5 4 3 8 8 C 1.50699 * 126.04091 * 179.97438 * 7 5 4 9 9 N 1.46500 * 109.46606 * 96.67876 * 8 7 5 10 10 C 1.46497 * 120.00239 * 273.37885 * 9 8 7 11 11 C 1.36940 * 119.99966 * 93.65709 * 9 8 7 12 12 H 1.08005 * 120.00049 * 350.30751 * 11 9 8 13 13 C 1.38814 * 119.99990 * 170.30217 * 11 9 8 14 14 N 1.31612 * 119.99959 * 349.63519 * 13 11 9 15 15 Si 1.86797 * 119.99719 * 169.63329 * 13 11 9 16 16 H 1.48498 * 109.47532 * 94.99041 * 15 13 11 17 17 H 1.48507 * 109.47165 * 214.98975 * 15 13 11 18 18 H 1.48503 * 109.47343 * 334.98765 * 15 13 11 19 19 C 1.34952 * 126.03478 * 270.31147 * 3 2 1 20 20 C 1.50694 * 126.12869 * 359.97438 * 19 3 2 21 21 H 1.08997 * 109.47142 * 300.00090 * 1 2 3 22 22 H 1.08994 * 109.47474 * 59.99852 * 1 2 3 23 23 H 1.09006 * 109.47025 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47087 * 240.00460 * 2 1 3 25 25 H 1.08996 * 109.47262 * 119.99655 * 2 1 3 26 26 H 1.09000 * 109.46711 * 275.45358 * 6 5 4 27 27 H 1.08994 * 109.47689 * 35.45689 * 6 5 4 28 28 H 1.09001 * 109.47344 * 155.46316 * 6 5 4 29 29 H 1.08994 * 109.47178 * 336.68646 * 8 7 5 30 30 H 1.08996 * 109.46912 * 216.67804 * 8 7 5 31 31 H 1.09002 * 109.47280 * 245.69839 * 10 9 8 32 32 H 1.09007 * 109.47323 * 5.70175 * 10 9 8 33 33 H 1.08999 * 109.47150 * 125.69650 * 10 9 8 34 34 H 0.97006 * 119.99633 * 179.97438 * 14 13 11 35 35 H 1.09003 * 109.46983 * 270.17505 * 20 19 3 36 36 H 1.08996 * 109.47558 * 30.17650 * 20 19 3 37 37 H 1.09001 * 109.47023 * 150.18181 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2935 2.1581 1.1328 5 6 2.7079 3.3326 0.7321 6 6 3.1136 4.4779 1.6237 7 6 2.7105 3.3413 -0.6666 8 6 3.1173 4.4961 -1.5453 9 7 4.5117 4.3258 -1.9609 10 6 5.5958 4.8195 -1.1081 11 6 4.8017 3.7102 -3.1493 12 1 4.0202 3.2126 -3.7045 13 6 6.1000 3.7258 -3.6404 14 7 7.0067 4.4969 -3.0788 15 14 6.5600 2.6523 -5.0982 16 1 6.4545 3.4450 -6.3495 17 1 7.9541 2.1673 -4.9355 18 1 5.6370 1.4910 -5.1687 19 6 2.2773 2.1317 -1.0913 20 6 2.1166 1.6990 -2.5258 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.2277 5.0402 1.9185 27 1 3.6093 4.0883 2.5128 28 1 3.7973 5.1336 1.0844 29 1 3.0149 5.4286 -0.9904 30 1 2.4764 4.5253 -2.4265 31 1 6.1186 5.6292 -1.6173 32 1 5.1809 5.1881 -0.1699 33 1 6.2944 4.0085 -0.9026 34 1 7.9141 4.5075 -3.4218 35 1 3.0459 1.2496 -2.8760 36 1 1.3106 0.9688 -2.5969 37 1 1.8773 2.5656 -3.1421 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158182015.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:32 Heat of formation + Delta-G solvation = 94.641987 kcal Electronic energy + Delta-G solvation = -17543.748225 eV Core-core repulsion = 14937.661092 eV Total energy + Delta-G solvation = -2606.087133 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.75916 -35.65549 -34.43742 -32.11750 -31.31844 -29.95941 -27.70795 -26.80627 -25.79864 -24.73289 -22.63907 -21.06467 -19.00052 -18.64795 -16.64379 -16.02541 -15.10836 -14.64633 -14.43788 -13.56266 -13.52265 -12.98953 -12.96209 -12.94996 -12.68575 -12.54514 -12.15571 -11.95793 -11.54797 -11.50034 -11.29862 -11.19202 -10.83044 -10.67240 -10.61950 -10.13113 -10.02602 -9.77164 -9.58372 -8.48574 -8.45914 -7.59395 -6.73427 -5.50931 -2.96211 2.44309 2.96369 3.39180 3.43525 3.48766 3.49727 4.60169 4.72520 5.04141 5.15140 5.26283 5.32899 5.45210 5.57104 5.59824 5.75360 5.80009 5.88704 5.99749 6.01171 6.04232 6.13410 6.23157 6.39068 6.42345 6.66619 6.85080 6.97473 7.01478 7.35871 7.66318 7.67572 7.84951 8.04611 8.35611 8.51020 9.38371 10.03653 10.48189 11.46353 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.024737 B = 0.008500 C = 0.006831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.656961 B = 3293.428111 C = 4098.227271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.133 3.867 3 N -0.381 5.381 4 N -0.315 5.315 5 C 0.078 3.922 6 C -0.071 4.071 7 C -0.229 4.229 8 C 0.223 3.777 9 N -0.600 5.600 10 C 0.165 3.835 11 C -0.235 4.235 12 H 0.073 0.927 13 C -0.010 4.010 14 N -0.916 5.916 15 Si 0.901 3.099 16 H -0.290 1.290 17 H -0.292 1.292 18 H -0.283 1.283 19 C 0.091 3.909 20 C -0.083 4.083 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.058 0.942 32 H -0.004 1.004 33 H 0.019 0.981 34 H 0.247 0.753 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.256 -5.294 5.071 13.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.011 3.989 3 N -0.165 5.165 4 N -0.138 5.138 5 C -0.088 4.088 6 C -0.130 4.130 7 C -0.243 4.243 8 C 0.094 3.906 9 N -0.323 5.323 10 C 0.020 3.980 11 C -0.365 4.365 12 H 0.091 0.909 13 C -0.206 4.206 14 N -0.565 5.565 15 Si 0.732 3.268 16 H -0.218 1.218 17 H -0.219 1.219 18 H -0.209 1.209 19 C -0.035 4.035 20 C -0.142 4.142 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.015 0.985 33 H 0.038 0.962 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.359 -6.148 6.012 14.247 hybrid contribution 0.618 -0.441 -1.415 1.606 sum -10.741 -6.589 4.597 13.413 Atomic orbital electron populations 1.22179 0.95003 1.02358 1.03019 1.21451 0.94604 0.79127 1.03693 1.48350 1.53355 1.11314 1.03514 1.77096 1.24598 1.04109 1.07963 1.22108 0.98771 0.93891 0.94071 1.20189 1.01239 0.93861 0.97664 1.21057 1.10559 0.98972 0.93682 1.19033 0.86351 0.91214 0.93979 1.44038 0.99440 1.68479 1.20314 1.21051 0.88993 0.98661 0.89252 1.19318 0.93932 1.26316 0.96898 0.90918 1.24821 0.96834 0.99935 0.98983 1.70137 1.03082 1.40560 1.42675 0.86281 0.77659 0.80271 0.82629 1.21755 1.21858 1.20859 1.20752 1.00739 0.91910 0.90143 1.20409 1.02067 1.02016 0.89687 0.91895 0.92121 0.91095 0.89518 0.89463 0.91392 0.91682 0.89988 0.93921 0.93148 0.92379 0.98538 0.96249 0.94171 0.89935 0.92713 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 10.24 37.16 0.38 -1.37 16 2 C 0.13 1.70 6.78 -4.04 -0.03 1.68 16 3 N -0.38 -6.71 3.61 -57.14 -0.21 -6.91 16 4 N -0.32 -6.13 12.58 33.67 0.42 -5.70 16 5 C 0.08 1.50 7.22 -82.40 -0.59 0.91 16 6 C -0.07 -1.13 10.15 36.01 0.37 -0.76 16 7 C -0.23 -4.64 5.68 -105.05 -0.60 -5.24 16 8 C 0.22 4.71 5.53 -5.19 -0.03 4.68 16 9 N -0.60 -15.23 2.92 -182.50 -0.53 -15.76 16 10 C 0.16 4.22 9.01 59.85 0.54 4.76 16 11 C -0.24 -6.37 9.77 -15.06 -0.15 -6.52 16 12 H 0.07 1.86 6.70 -52.48 -0.35 1.51 16 13 C -0.01 -0.28 5.35 -17.43 -0.09 -0.37 16 14 N -0.92 -27.07 9.81 55.49 0.54 -26.52 16 15 Si 0.90 22.05 29.57 -169.99 -5.03 17.02 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 19 C 0.09 1.70 6.93 -82.26 -0.57 1.13 16 20 C -0.08 -1.34 8.92 36.00 0.32 -1.02 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.09 0.98 7.68 -51.93 -0.40 0.58 16 25 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.08 1.34 5.46 -51.93 -0.28 1.05 16 29 H 0.04 0.84 7.34 -51.93 -0.38 0.46 16 30 H 0.05 1.03 7.22 -51.93 -0.38 0.65 16 31 H 0.06 1.62 6.56 -51.93 -0.34 1.27 16 32 H 0.00 -0.09 5.88 -51.93 -0.31 -0.39 16 33 H 0.02 0.54 7.64 -51.93 -0.40 0.14 16 34 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.08 1.45 8.02 -51.93 -0.42 1.03 16 36 H 0.05 0.70 7.74 -51.93 -0.40 0.29 16 37 H 0.08 1.36 7.07 -51.93 -0.37 0.99 16 LS Contribution 299.86 15.07 4.52 4.52 Total: -1.00 -32.19 299.86 -6.42 -38.61 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -5.69 Total: -3.12 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -0.45 Total: -2.13 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 0.23 Total: -54.90 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.19 -6.42 -38.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158182015.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.251 kcal (2) G-P(sol) polarization free energy of solvation -32.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds