Wall clock time and date at job start Sun Mar 29 2020 21:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00213 * 2 1 4 4 H 1.48499 * 109.47168 * 240.00354 * 3 2 1 5 5 H 1.48500 * 109.46829 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47129 * 120.00078 * 3 2 1 7 7 C 1.37881 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99942 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99987 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46924 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99970 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46075 * 155.00282 * 11 10 9 13 13 C 1.53066 * 109.43808 * 180.32036 * 12 11 10 14 14 C 1.52674 * 109.48985 * 300.57246 * 13 12 11 15 15 C 1.54010 * 109.77076 * 298.04608 * 14 13 12 16 16 C 1.54949 * 104.12065 * 217.24111 * 15 14 13 17 17 C 1.54909 * 102.78198 * 37.71994 * 16 15 14 18 18 C 1.53594 * 110.02675 * 180.69664 * 14 13 12 19 19 C 1.52683 * 110.34389 * 59.13430 * 14 13 12 20 20 C 1.53006 * 109.45838 * 275.06456 * 11 10 9 21 21 H 0.96993 * 119.99607 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47111 * 60.00695 * 9 7 2 23 23 H 1.08995 * 109.47279 * 299.99787 * 9 7 2 24 24 H 1.00899 * 111.00292 * 56.04514 * 10 9 7 25 25 H 1.08997 * 109.45411 * 35.03107 * 11 10 9 26 26 H 1.08998 * 109.47755 * 60.32660 * 12 11 10 27 27 H 1.09002 * 109.47288 * 300.30610 * 12 11 10 28 28 H 1.08999 * 109.46546 * 60.58483 * 13 12 11 29 29 H 1.09001 * 109.46222 * 180.56812 * 13 12 11 30 30 H 1.08998 * 110.49806 * 335.90450 * 15 14 13 31 31 H 1.09002 * 110.49714 * 98.58334 * 15 14 13 32 32 H 1.08997 * 110.75254 * 279.39455 * 16 15 14 33 33 H 1.09003 * 110.90578 * 156.11690 * 16 15 14 34 34 H 1.09002 * 110.48150 * 203.52928 * 17 16 15 35 35 H 1.09000 * 110.59658 * 80.94760 * 17 16 15 36 36 H 1.09005 * 110.04724 * 238.34339 * 18 14 13 37 37 H 1.09005 * 110.05137 * 359.76874 * 18 14 13 38 38 H 1.09003 * 109.46886 * 60.86236 * 19 14 13 39 39 H 1.08997 * 109.47125 * 180.85192 * 19 14 13 40 40 H 1.09002 * 109.47325 * 59.68585 * 20 11 10 41 41 H 1.09000 * 109.48349 * 299.66691 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9071 -0.0011 12 6 2.4118 -5.9783 -0.6108 13 6 1.6786 -7.3219 -0.6185 14 6 1.3059 -7.7070 0.8111 15 6 2.5831 -7.8750 1.6552 16 6 2.2646 -9.0696 2.5892 17 6 1.4505 -10.0150 1.6709 18 6 0.5843 -9.0629 0.8195 19 6 0.4130 -6.6363 1.4336 20 6 1.1498 -5.2948 1.4357 21 1 -0.4849 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8904 23 1 0.6247 -2.5571 0.8896 24 1 2.8405 -3.5487 0.7808 25 1 0.5926 -4.8248 -0.5914 26 1 3.3223 -6.0644 -0.0177 27 1 2.6686 -5.6985 -1.6325 28 1 0.7735 -7.2384 -1.2200 29 1 2.3278 -8.0875 -1.0434 30 1 3.4352 -8.1065 1.0162 31 1 2.7759 -6.9749 2.2390 32 1 1.6643 -8.7458 3.4394 33 1 3.1806 -9.5540 2.9273 34 1 0.8196 -10.6750 2.2663 35 1 2.1161 -10.5975 1.0338 36 1 -0.4044 -8.9572 1.2661 37 1 0.4958 -9.4454 -0.1974 38 1 -0.5048 -6.5458 0.8525 39 1 0.1681 -6.9178 2.4577 40 1 0.5083 -4.5284 1.8707 41 1 2.0626 -5.3823 2.0250 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161361689.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:52 Heat of formation + Delta-G solvation = -39.703661 kcal Electronic energy + Delta-G solvation = -17487.692446 eV Core-core repulsion = 14979.319992 eV Total energy + Delta-G solvation = -2508.372454 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.03713 -36.42139 -33.60654 -32.01782 -30.56163 -29.18998 -28.41292 -25.92721 -23.47536 -22.54550 -21.44307 -20.92748 -19.95817 -18.07867 -16.38430 -15.69905 -15.43484 -14.66418 -14.39784 -14.14928 -13.72002 -13.47259 -12.97121 -12.79836 -12.56171 -12.11110 -11.93985 -11.79541 -11.33173 -11.14987 -11.09909 -10.95864 -10.82015 -10.74041 -10.65147 -10.56120 -10.39907 -10.16997 -9.91994 -9.74306 -9.59517 -9.10707 -8.44454 -7.16944 -5.99853 -4.01606 3.35456 3.39098 3.42421 4.45051 4.51964 4.62115 4.68628 5.11917 5.17686 5.18970 5.35773 5.38947 5.48191 5.50750 5.59109 5.63229 5.68463 5.73013 5.82067 5.82959 5.88224 5.93010 6.02626 6.08068 6.15699 6.23337 6.28717 6.32198 6.39191 6.48126 6.54889 6.57847 6.80901 6.83426 7.33562 7.50354 7.83313 8.18636 8.47665 8.69422 9.08097 9.63139 11.11179 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.056028 B = 0.004574 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.626057 B = 6119.887696 C = 6143.211600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.061 0.939 9 C 0.195 3.805 10 N -0.687 5.687 11 C 0.089 3.911 12 C -0.105 4.105 13 C -0.104 4.104 14 C -0.058 4.058 15 C -0.116 4.116 16 C -0.126 4.126 17 C -0.123 4.123 18 C -0.117 4.117 19 C -0.100 4.100 20 C -0.149 4.149 21 H 0.261 0.739 22 H 0.025 0.975 23 H -0.014 1.014 24 H 0.327 0.673 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.272 -18.493 3.321 18.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.079 0.921 9 C 0.068 3.932 10 N -0.315 5.315 11 C -0.022 4.022 12 C -0.143 4.143 13 C -0.142 4.142 14 C -0.058 4.058 15 C -0.154 4.154 16 C -0.163 4.163 17 C -0.161 4.161 18 C -0.155 4.155 19 C -0.138 4.138 20 C -0.188 4.188 21 H 0.071 0.929 22 H 0.043 0.957 23 H 0.004 0.996 24 H 0.144 0.856 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.192 -18.324 2.612 18.638 hybrid contribution -0.044 0.953 0.938 1.338 sum 2.147 -17.371 3.550 17.859 Atomic orbital electron populations 1.69957 1.06073 1.26812 1.50994 1.24989 0.94860 0.99310 0.95401 0.86557 0.79431 0.82747 0.78631 1.20171 1.21366 1.20296 1.21183 0.93468 0.90394 1.50240 0.92098 1.19550 0.90640 0.87391 0.95587 1.60742 1.20864 1.01223 1.48688 1.21501 0.96433 0.90504 0.93770 1.21530 0.98329 0.93196 1.01282 1.21611 1.00123 0.97294 0.95199 1.20940 0.95104 0.94253 0.95531 1.22531 0.97140 0.98148 0.97542 1.22510 0.99434 0.96439 0.97953 1.22350 0.98337 0.97490 0.97913 1.22252 0.98706 0.94657 0.99863 1.21510 0.97957 0.94427 0.99882 1.22367 1.00408 0.96683 0.99346 0.92918 0.95653 0.99608 0.85640 0.91507 0.92358 0.91772 0.92309 0.92418 0.91700 0.91086 0.91802 0.92090 0.92257 0.91985 0.91946 0.91931 0.92245 0.92621 0.91998 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.83 9.32 -34.44 -0.32 -15.15 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.20 5.20 5.24 -4.98 -0.03 5.18 16 10 N -0.69 -14.96 6.24 -107.99 -0.67 -15.63 16 11 C 0.09 1.59 2.46 -67.71 -0.17 1.42 16 12 C -0.11 -1.58 5.33 -26.70 -0.14 -1.72 16 13 C -0.10 -1.30 4.33 -26.86 -0.12 -1.42 16 14 C -0.06 -0.68 0.63 -154.00 -0.10 -0.78 16 15 C -0.12 -1.30 4.65 -25.18 -0.12 -1.41 16 16 C -0.13 -1.22 6.91 -24.70 -0.17 -1.39 16 17 C -0.12 -1.13 6.83 -25.03 -0.17 -1.30 16 18 C -0.12 -1.20 6.11 -25.73 -0.16 -1.35 16 19 C -0.10 -1.32 4.47 -26.86 -0.12 -1.44 16 20 C -0.15 -2.37 4.96 -26.70 -0.13 -2.50 16 21 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 22 H 0.03 0.73 8.05 -51.93 -0.42 0.32 16 23 H -0.01 -0.39 7.42 -51.93 -0.39 -0.78 16 24 H 0.33 6.86 8.47 -39.29 -0.33 6.53 16 25 H 0.07 1.30 7.80 -51.93 -0.40 0.90 16 26 H 0.06 0.85 7.20 -51.93 -0.37 0.48 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 30 H 0.06 0.71 7.67 -51.93 -0.40 0.32 16 31 H 0.07 0.86 5.84 -51.93 -0.30 0.55 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 37 H 0.06 0.61 7.67 -51.93 -0.40 0.21 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 1.12 7.44 -51.93 -0.39 0.73 16 41 H 0.06 0.93 6.18 -51.93 -0.32 0.61 16 LS Contribution 307.86 15.07 4.64 4.64 Total: -1.00 -29.44 307.86 -9.62 -39.06 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -7.47 Total: 1.82 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -1.83 Total: -20.35 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.06 Total: -42.13 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.44 -9.62 -39.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161361689.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.641 kcal (2) G-P(sol) polarization free energy of solvation -29.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds