Wall clock time and date at job start Sun Mar 29 2020 21:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00213 * 2 1 4 4 H 1.48499 * 109.47168 * 240.00354 * 3 2 1 5 5 H 1.48500 * 109.46829 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47129 * 120.00078 * 3 2 1 7 7 C 1.37881 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99942 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99987 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46924 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99970 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46075 * 155.00282 * 11 10 9 13 13 C 1.53066 * 109.43808 * 180.32036 * 12 11 10 14 14 C 1.52674 * 109.48985 * 300.57246 * 13 12 11 15 15 C 1.54010 * 109.77076 * 298.04608 * 14 13 12 16 16 C 1.54949 * 104.12065 * 217.24111 * 15 14 13 17 17 C 1.54909 * 102.78198 * 37.71994 * 16 15 14 18 18 C 1.53594 * 110.02675 * 180.69664 * 14 13 12 19 19 C 1.52683 * 110.34389 * 59.13430 * 14 13 12 20 20 C 1.53006 * 109.45838 * 275.06456 * 11 10 9 21 21 H 0.96993 * 119.99607 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47111 * 60.00695 * 9 7 2 23 23 H 1.08995 * 109.47279 * 299.99787 * 9 7 2 24 24 H 1.00899 * 111.00292 * 56.04514 * 10 9 7 25 25 H 1.08997 * 109.45411 * 35.03107 * 11 10 9 26 26 H 1.08998 * 109.47755 * 60.32660 * 12 11 10 27 27 H 1.09002 * 109.47288 * 300.30610 * 12 11 10 28 28 H 1.08999 * 109.46546 * 60.58483 * 13 12 11 29 29 H 1.09001 * 109.46222 * 180.56812 * 13 12 11 30 30 H 1.08998 * 110.49806 * 335.90450 * 15 14 13 31 31 H 1.09002 * 110.49714 * 98.58334 * 15 14 13 32 32 H 1.08997 * 110.75254 * 279.39455 * 16 15 14 33 33 H 1.09003 * 110.90578 * 156.11690 * 16 15 14 34 34 H 1.09002 * 110.48150 * 203.52928 * 17 16 15 35 35 H 1.09000 * 110.59658 * 80.94760 * 17 16 15 36 36 H 1.09005 * 110.04724 * 238.34339 * 18 14 13 37 37 H 1.09005 * 110.05137 * 359.76874 * 18 14 13 38 38 H 1.09003 * 109.46886 * 60.86236 * 19 14 13 39 39 H 1.08997 * 109.47125 * 180.85192 * 19 14 13 40 40 H 1.09002 * 109.47325 * 59.68585 * 20 11 10 41 41 H 1.09000 * 109.48349 * 299.66691 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9071 -0.0011 12 6 2.4118 -5.9783 -0.6108 13 6 1.6786 -7.3219 -0.6185 14 6 1.3059 -7.7070 0.8111 15 6 2.5831 -7.8750 1.6552 16 6 2.2646 -9.0696 2.5892 17 6 1.4505 -10.0150 1.6709 18 6 0.5843 -9.0629 0.8195 19 6 0.4130 -6.6363 1.4336 20 6 1.1498 -5.2948 1.4357 21 1 -0.4849 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8904 23 1 0.6247 -2.5571 0.8896 24 1 2.8405 -3.5487 0.7808 25 1 0.5926 -4.8248 -0.5914 26 1 3.3223 -6.0644 -0.0177 27 1 2.6686 -5.6985 -1.6325 28 1 0.7735 -7.2384 -1.2200 29 1 2.3278 -8.0875 -1.0434 30 1 3.4352 -8.1065 1.0162 31 1 2.7759 -6.9749 2.2390 32 1 1.6643 -8.7458 3.4394 33 1 3.1806 -9.5540 2.9273 34 1 0.8196 -10.6750 2.2663 35 1 2.1161 -10.5975 1.0338 36 1 -0.4044 -8.9572 1.2661 37 1 0.4958 -9.4454 -0.1974 38 1 -0.5048 -6.5458 0.8525 39 1 0.1681 -6.9178 2.4577 40 1 0.5083 -4.5284 1.8707 41 1 2.0626 -5.3823 2.0250 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161361689.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:52 Heat of formation + Delta-G solvation = -56.696728 kcal Electronic energy + Delta-G solvation = -17488.429320 eV Core-core repulsion = 14979.319992 eV Total energy + Delta-G solvation = -2509.109329 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.10245 -37.82035 -35.37175 -33.80502 -31.75572 -30.45120 -29.48300 -27.73898 -24.80476 -23.81556 -23.24212 -22.08197 -20.98777 -19.22056 -18.45602 -16.82656 -16.62365 -16.42070 -15.82708 -15.43698 -15.20842 -14.63908 -14.31480 -14.11078 -13.84337 -13.63720 -13.43998 -13.20209 -13.01405 -12.65465 -12.57766 -12.16797 -12.05263 -11.99774 -11.88131 -11.85750 -11.50698 -11.35303 -11.31564 -11.10529 -10.90311 -10.81996 -10.64443 -9.01945 -8.23018 -6.34866 1.40032 1.44137 1.52133 2.39480 3.09781 3.48761 3.67473 3.74386 3.83705 3.97888 4.20799 4.31416 4.41580 4.46775 4.55122 4.60382 4.65614 4.68163 4.71605 4.86592 4.90690 4.97684 5.02257 5.08002 5.13764 5.15373 5.18631 5.23187 5.25530 5.30762 5.38272 5.42563 5.48364 5.55896 5.61770 5.64003 5.68341 6.03076 6.48373 6.74793 6.91029 7.36376 8.88388 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.056028 B = 0.004574 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.626057 B = 6119.887696 C = 6143.211600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.975 3.025 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.538 4.538 8 H 0.064 0.936 9 C 0.212 3.788 10 N -0.686 5.686 11 C 0.087 3.913 12 C -0.096 4.096 13 C -0.099 4.099 14 C -0.056 4.056 15 C -0.117 4.117 16 C -0.124 4.124 17 C -0.119 4.119 18 C -0.116 4.116 19 C -0.094 4.094 20 C -0.140 4.140 21 H 0.265 0.735 22 H -0.008 1.008 23 H -0.040 1.040 24 H 0.333 0.667 25 H 0.043 0.957 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.031 0.969 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.624 -19.731 3.683 20.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.798 3.202 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.576 4.576 8 H 0.082 0.918 9 C 0.085 3.915 10 N -0.315 5.315 11 C -0.024 4.024 12 C -0.134 4.134 13 C -0.137 4.137 14 C -0.056 4.056 15 C -0.155 4.155 16 C -0.161 4.161 17 C -0.157 4.157 18 C -0.153 4.153 19 C -0.132 4.132 20 C -0.179 4.179 21 H 0.074 0.926 22 H 0.011 0.989 23 H -0.022 1.022 24 H 0.150 0.850 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.049 0.951 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.552 -19.592 2.978 20.133 hybrid contribution -0.498 1.313 0.817 1.625 sum 3.055 -18.279 3.795 18.917 Atomic orbital electron populations 1.70097 1.07888 1.28066 1.51486 1.25985 0.95790 1.03468 0.94490 0.85363 0.78098 0.77488 0.79207 1.19292 1.20714 1.18993 1.21552 0.93817 0.91537 1.50739 0.91755 1.19156 0.90628 0.89026 0.92739 1.60659 1.20205 1.01591 1.49034 1.21604 0.96031 0.89626 0.95100 1.21436 0.98176 0.93416 1.00358 1.21594 1.00036 0.96069 0.96007 1.20921 0.95343 0.94523 0.94801 1.22523 0.96822 0.98420 0.97717 1.22505 1.00075 0.95902 0.97644 1.22343 0.98295 0.97248 0.97782 1.22228 0.98713 0.93720 1.00668 1.21477 0.97694 0.93321 1.00755 1.22235 1.00621 0.97485 0.97605 0.92619 0.98950 1.02221 0.84984 0.93902 0.91474 0.92788 0.92697 0.90273 0.91157 0.92276 0.92029 0.90945 0.91197 0.91123 0.91951 0.91230 0.92960 0.91478 0.95050 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.93 13.29 21.45 0.28 -57.64 16 2 C 0.00 0.04 5.46 84.65 0.46 0.51 16 3 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.54 -31.69 9.32 25.60 0.24 -31.45 16 8 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 9 C 0.21 11.88 5.24 85.56 0.45 12.33 16 10 N -0.69 -30.83 6.24 -495.57 -3.09 -33.92 16 11 C 0.09 3.19 2.46 44.92 0.11 3.30 16 12 C -0.10 -2.81 5.33 30.62 0.16 -2.65 16 13 C -0.10 -2.31 4.33 30.51 0.13 -2.18 16 14 C -0.06 -1.20 0.63 -51.85 -0.03 -1.23 16 15 C -0.12 -2.35 4.65 31.60 0.15 -2.20 16 16 C -0.12 -2.05 6.91 31.91 0.22 -1.83 16 17 C -0.12 -1.80 6.83 31.70 0.22 -1.58 16 18 C -0.12 -2.06 6.11 31.25 0.19 -1.87 16 19 C -0.09 -2.45 4.47 30.51 0.14 -2.31 16 20 C -0.14 -4.57 4.96 30.62 0.15 -4.42 16 21 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 22 H -0.01 -0.47 8.05 -2.39 -0.02 -0.49 16 23 H -0.04 -2.39 7.42 -2.39 -0.02 -2.41 16 24 H 0.33 14.23 8.47 -89.69 -0.76 13.47 16 25 H 0.04 1.77 7.80 -2.39 -0.02 1.75 16 26 H 0.07 1.86 7.20 -2.39 -0.02 1.84 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 1.56 8.12 -2.39 -0.02 1.54 16 30 H 0.07 1.34 7.67 -2.39 -0.02 1.33 16 31 H 0.06 1.32 5.84 -2.39 -0.01 1.31 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 1.12 7.67 -2.38 -0.02 1.10 16 37 H 0.07 1.16 7.67 -2.38 -0.02 1.14 16 38 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.03 1.19 7.44 -2.39 -0.02 1.17 16 41 H 0.07 2.18 6.18 -2.39 -0.01 2.17 16 Total: -1.00 -64.22 307.86 2.03 -62.20 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.22 Total: 17.83 kcal Atomic # 6 Polarization: -38.17 SS G_CDS: 2.59 Total: -35.59 kcal Atomic # 7 Polarization: -88.76 SS G_CDS: -2.81 Total: -91.57 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -64.22 2.03 -62.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161361689.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.501 kcal (2) G-P(sol) polarization free energy of solvation -64.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds