Wall clock time and date at job start Sun Mar 29 2020 21:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47670 * 2 1 4 4 C 1.34943 * 126.03631 * 125.25870 * 3 2 1 5 5 C 1.35324 * 107.74603 * 180.14806 * 4 3 2 6 6 C 1.50701 * 126.04245 * 179.87114 * 5 4 3 7 7 N 1.46903 * 109.47054 * 269.71960 * 6 5 4 8 8 C 1.46898 * 110.99673 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.47006 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47127 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47055 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00290 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00258 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00465 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 119.99610 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.46964 * 90.00693 * 15 13 11 17 17 H 1.48502 * 109.47035 * 210.00526 * 15 13 11 18 18 H 1.48499 * 109.47257 * 330.00601 * 15 13 11 19 19 C 1.39873 * 107.91520 * 359.61405 * 5 4 3 20 20 N 1.30835 * 108.20227 * 0.23773 * 19 5 4 21 21 H 1.08999 * 109.47088 * 300.00316 * 1 2 3 22 22 H 1.09004 * 109.46788 * 60.00200 * 1 2 3 23 23 H 1.08994 * 109.47248 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47088 * 239.99684 * 2 1 3 25 25 H 1.09003 * 109.47132 * 120.00210 * 2 1 3 26 26 H 1.08002 * 126.13024 * 359.97438 * 4 3 2 27 27 H 1.08993 * 109.46849 * 149.71924 * 6 5 4 28 28 H 1.08995 * 109.46627 * 29.71259 * 6 5 4 29 29 H 1.00906 * 110.99345 * 303.95214 * 7 6 5 30 30 H 1.09001 * 109.47062 * 59.99745 * 8 7 6 31 31 H 1.08993 * 109.47084 * 299.99192 * 8 7 6 32 32 H 1.09001 * 109.46801 * 300.00064 * 9 8 7 33 33 H 1.09001 * 109.46998 * 59.99660 * 9 8 7 34 34 H 1.08996 * 109.46952 * 300.00302 * 10 9 8 35 35 H 1.09001 * 109.46832 * 60.00321 * 10 9 8 36 36 H 0.96999 * 120.00061 * 179.97438 * 14 13 11 37 37 H 1.07999 * 125.89451 * 180.22500 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8770 1.9196 0.8910 5 6 3.0717 3.2136 0.5462 6 6 3.9551 4.1998 1.2660 7 7 3.1725 4.8986 2.2942 8 6 4.0029 5.8707 3.0176 9 6 3.1549 6.5773 4.0772 10 6 4.0199 7.5893 4.8311 11 6 3.1849 8.2848 5.8750 12 1 2.1414 8.0307 5.9891 13 6 3.7526 9.2462 6.6839 14 7 3.0240 9.8528 7.5954 15 14 5.5574 9.6862 6.4861 16 1 5.6928 10.7896 5.5016 17 1 6.1073 10.1207 7.7953 18 1 6.3066 8.4980 6.0042 19 6 2.3128 3.4723 -0.5999 20 7 1.6810 2.3746 -0.9281 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 3.3260 1.4099 1.7308 27 1 4.3470 4.9246 0.5525 28 1 4.7827 3.6696 1.7372 29 1 2.3624 5.3448 1.8908 30 1 4.3948 6.6071 2.3160 31 1 4.8311 5.3525 3.5009 32 1 2.3269 7.0955 3.5935 33 1 2.7626 5.8411 4.7788 34 1 4.8477 7.0707 5.3147 35 1 4.4125 8.3255 4.1296 36 1 3.4236 10.5289 8.1646 37 1 2.2576 4.4154 -1.1232 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163966262.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:27 Heat of formation + Delta-G solvation = 61.257112 kcal Electronic energy + Delta-G solvation = -15802.125469 eV Core-core repulsion = 13194.590659 eV Total energy + Delta-G solvation = -2607.534810 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.28963 -36.54158 -34.71764 -33.47162 -31.73902 -30.46951 -29.68024 -26.77538 -24.51435 -23.68880 -21.92373 -20.87795 -20.36313 -19.79519 -17.11161 -16.65013 -15.71946 -15.58000 -14.67402 -14.45727 -14.30291 -13.94659 -13.77547 -13.49461 -12.95603 -12.57125 -12.45017 -12.38202 -12.18254 -11.72370 -11.63326 -11.53310 -10.88070 -10.72714 -10.56962 -9.91084 -9.68433 -9.56180 -9.51718 -9.12617 -8.53978 -8.49423 -8.08300 -5.99800 -3.97290 1.80326 2.36151 2.70146 3.33684 3.40816 3.45031 4.21762 4.49195 4.61244 4.66925 4.72629 4.83317 4.89920 5.17248 5.28587 5.34233 5.37803 5.41301 5.64956 5.71735 5.77413 5.83609 5.85742 6.14708 6.24666 6.55123 6.61905 6.64976 6.90375 6.97728 7.31062 7.42766 7.50113 7.59715 7.68610 7.85440 8.60057 9.06158 9.62978 11.13882 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.051528 B = 0.003377 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.259405 B = 8290.426296 C = 8534.327843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.132 3.868 3 N -0.376 5.376 4 C 0.072 3.928 5 C -0.232 4.232 6 C 0.136 3.864 7 N -0.688 5.688 8 C 0.056 3.944 9 C -0.099 4.099 10 C -0.013 4.013 11 C -0.518 4.518 12 H 0.071 0.929 13 C 0.064 3.936 14 N -0.906 5.906 15 Si 0.881 3.119 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.265 1.265 19 C 0.052 3.948 20 N -0.300 5.300 21 H 0.062 0.938 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.173 0.827 27 H 0.033 0.967 28 H 0.073 0.927 29 H 0.339 0.661 30 H 0.023 0.977 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.015 0.985 35 H 0.009 0.991 36 H 0.262 0.738 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.185 -19.144 -16.507 25.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.010 3.990 3 N -0.159 5.159 4 C -0.074 4.074 5 C -0.243 4.243 6 C 0.006 3.994 7 N -0.319 5.319 8 C -0.073 4.073 9 C -0.137 4.137 10 C -0.051 4.051 11 C -0.556 4.556 12 H 0.090 0.910 13 C -0.137 4.137 14 N -0.545 5.545 15 Si 0.708 3.292 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.190 1.190 19 C -0.135 4.135 20 N -0.121 5.121 21 H 0.081 0.919 22 H 0.088 0.912 23 H 0.092 0.908 24 H 0.099 0.901 25 H 0.113 0.887 26 H 0.190 0.810 27 H 0.052 0.948 28 H 0.091 0.909 29 H 0.157 0.843 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.034 0.966 35 H 0.027 0.973 36 H 0.072 0.928 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.576 -20.222 -16.716 26.243 hybrid contribution 1.558 1.434 -0.016 2.117 sum 0.982 -18.788 -16.732 25.178 Atomic orbital electron populations 1.22052 0.93791 1.02749 1.03747 1.21650 0.96138 0.77626 1.03537 1.48652 1.35572 1.10136 1.21551 1.22352 0.94809 0.94805 0.95459 1.20024 1.08674 0.95041 1.00598 1.20114 0.93899 0.93720 0.91708 1.60601 1.09980 1.32603 1.28693 1.22153 0.96477 0.92639 0.95993 1.21439 0.98113 0.97912 0.96267 1.19543 0.95943 0.94160 0.95444 1.21174 0.98217 1.20102 1.16125 0.91048 1.25052 0.97845 0.95823 0.94935 1.69921 1.36283 1.26623 1.21682 0.86759 0.85991 0.79078 0.77335 1.20381 1.21456 1.18990 1.23799 0.95797 0.97384 0.96481 1.77271 1.23774 0.97088 1.13927 0.91877 0.91160 0.90812 0.90061 0.88699 0.81013 0.94850 0.90862 0.84329 0.95837 0.91564 0.93095 0.92029 0.96635 0.97286 0.92808 0.80376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 10.10 37.16 0.38 -0.75 16 2 C 0.13 0.90 7.23 -4.04 -0.03 0.87 16 3 N -0.38 -3.99 3.68 -61.36 -0.23 -4.22 16 4 C 0.07 0.77 11.36 -17.22 -0.20 0.57 16 5 C -0.23 -2.70 5.61 -105.05 -0.59 -3.29 16 6 C 0.14 1.63 6.17 -4.97 -0.03 1.60 16 7 N -0.69 -9.88 6.49 -115.06 -0.75 -10.63 16 8 C 0.06 0.92 5.69 -3.82 -0.02 0.90 16 9 C -0.10 -2.01 5.41 -26.73 -0.14 -2.16 16 10 C -0.01 -0.32 4.04 -27.89 -0.11 -0.43 16 11 C -0.52 -15.14 9.66 -34.44 -0.33 -15.47 16 12 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 13 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 14 N -0.91 -28.47 13.96 55.43 0.77 -27.70 16 15 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 19 C 0.05 0.61 11.96 -17.36 -0.21 0.40 16 20 N -0.30 -3.78 12.42 30.62 0.38 -3.40 16 21 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.09 0.43 8.07 -51.93 -0.42 0.01 16 26 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.34 4.78 8.72 -39.29 -0.34 4.44 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 35 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 36 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 37 H 0.18 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 312.86 15.07 4.71 4.71 Total: -1.00 -33.24 312.86 -7.35 -40.59 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.19 Total: -0.82 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -1.39 Total: -15.94 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.18 Total: -45.94 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.24 -7.35 -40.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163966262.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.847 kcal (2) G-P(sol) polarization free energy of solvation -33.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds