Wall clock time and date at job start Sun Mar 29 2020 21:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47670 * 2 1 4 4 C 1.34943 * 126.03631 * 125.25870 * 3 2 1 5 5 C 1.35324 * 107.74603 * 180.14806 * 4 3 2 6 6 C 1.50701 * 126.04245 * 179.87114 * 5 4 3 7 7 N 1.46903 * 109.47054 * 269.71960 * 6 5 4 8 8 C 1.46898 * 110.99673 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.47006 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47127 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47055 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00290 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00258 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00465 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 119.99610 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.46964 * 90.00693 * 15 13 11 17 17 H 1.48502 * 109.47035 * 210.00526 * 15 13 11 18 18 H 1.48499 * 109.47257 * 330.00601 * 15 13 11 19 19 C 1.39873 * 107.91520 * 359.61405 * 5 4 3 20 20 N 1.30835 * 108.20227 * 0.23773 * 19 5 4 21 21 H 1.08999 * 109.47088 * 300.00316 * 1 2 3 22 22 H 1.09004 * 109.46788 * 60.00200 * 1 2 3 23 23 H 1.08994 * 109.47248 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47088 * 239.99684 * 2 1 3 25 25 H 1.09003 * 109.47132 * 120.00210 * 2 1 3 26 26 H 1.08002 * 126.13024 * 359.97438 * 4 3 2 27 27 H 1.08993 * 109.46849 * 149.71924 * 6 5 4 28 28 H 1.08995 * 109.46627 * 29.71259 * 6 5 4 29 29 H 1.00906 * 110.99345 * 303.95214 * 7 6 5 30 30 H 1.09001 * 109.47062 * 59.99745 * 8 7 6 31 31 H 1.08993 * 109.47084 * 299.99192 * 8 7 6 32 32 H 1.09001 * 109.46801 * 300.00064 * 9 8 7 33 33 H 1.09001 * 109.46998 * 59.99660 * 9 8 7 34 34 H 1.08996 * 109.46952 * 300.00302 * 10 9 8 35 35 H 1.09001 * 109.46832 * 60.00321 * 10 9 8 36 36 H 0.96999 * 120.00061 * 179.97438 * 14 13 11 37 37 H 1.07999 * 125.89451 * 180.22500 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8770 1.9196 0.8910 5 6 3.0717 3.2136 0.5462 6 6 3.9551 4.1998 1.2660 7 7 3.1725 4.8986 2.2942 8 6 4.0029 5.8707 3.0176 9 6 3.1549 6.5773 4.0772 10 6 4.0199 7.5893 4.8311 11 6 3.1849 8.2848 5.8750 12 1 2.1414 8.0307 5.9891 13 6 3.7526 9.2462 6.6839 14 7 3.0240 9.8528 7.5954 15 14 5.5574 9.6862 6.4861 16 1 5.6928 10.7896 5.5016 17 1 6.1073 10.1207 7.7953 18 1 6.3066 8.4980 6.0042 19 6 2.3128 3.4723 -0.5999 20 7 1.6810 2.3746 -0.9281 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 3.3260 1.4099 1.7308 27 1 4.3470 4.9246 0.5525 28 1 4.7827 3.6696 1.7372 29 1 2.3624 5.3448 1.8908 30 1 4.3948 6.6071 2.3160 31 1 4.8311 5.3525 3.5009 32 1 2.3269 7.0955 3.5935 33 1 2.7626 5.8411 4.7788 34 1 4.8477 7.0707 5.3147 35 1 4.4125 8.3255 4.1296 36 1 3.4236 10.5289 8.1646 37 1 2.2576 4.4154 -1.1232 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163966262.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:27 Heat of formation + Delta-G solvation = 38.485210 kcal Electronic energy + Delta-G solvation = -15803.112933 eV Core-core repulsion = 13194.590659 eV Total energy + Delta-G solvation = -2608.522274 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.09033 -37.77275 -35.73453 -35.04209 -33.50301 -31.39895 -30.71553 -28.33338 -25.63376 -24.51807 -23.45092 -21.93729 -21.57912 -20.86398 -18.88612 -17.81855 -16.81684 -16.48241 -16.27950 -15.55593 -15.42869 -15.19314 -14.76825 -14.68893 -14.42171 -13.78689 -13.60383 -13.46077 -13.07047 -12.97835 -12.91580 -12.53633 -12.38691 -12.24683 -11.78353 -11.57195 -11.42995 -11.35486 -11.21437 -10.74411 -10.32705 -9.44245 -9.13517 -8.27612 -6.32043 1.00385 1.37966 1.40344 1.52866 1.68804 1.83692 2.38722 3.07733 3.52305 3.61902 4.02507 4.10569 4.16571 4.26051 4.33994 4.38569 4.46333 4.54298 4.73506 4.75259 4.80739 4.86358 4.95928 5.00364 5.04520 5.15484 5.23071 5.29591 5.55961 5.65321 5.69269 5.73805 6.18080 6.22517 6.32957 6.54641 6.76774 6.78346 7.32623 8.89622 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.051528 B = 0.003377 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.259405 B = 8290.426296 C = 8534.327843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.122 3.878 3 N -0.377 5.377 4 C 0.074 3.926 5 C -0.249 4.249 6 C 0.142 3.858 7 N -0.693 5.693 8 C 0.070 3.930 9 C -0.091 4.091 10 C -0.010 4.010 11 C -0.535 4.535 12 H 0.027 0.973 13 C -0.001 4.001 14 N -0.955 5.955 15 Si 0.956 3.044 16 H -0.266 1.266 17 H -0.285 1.285 18 H -0.243 1.243 19 C 0.043 3.957 20 N -0.331 5.331 21 H 0.048 0.952 22 H 0.049 0.951 23 H 0.099 0.901 24 H 0.092 0.908 25 H 0.123 0.877 26 H 0.198 0.802 27 H 0.040 0.960 28 H 0.081 0.919 29 H 0.339 0.661 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.046 0.954 34 H 0.022 0.978 35 H 0.019 0.981 36 H 0.266 0.734 37 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.276 -20.463 -17.543 27.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.002 3.998 3 N -0.160 5.160 4 C -0.074 4.074 5 C -0.261 4.261 6 C 0.013 3.987 7 N -0.325 5.325 8 C -0.059 4.059 9 C -0.129 4.129 10 C -0.048 4.048 11 C -0.573 4.573 12 H 0.045 0.955 13 C -0.197 4.197 14 N -0.596 5.596 15 Si 0.779 3.221 16 H -0.191 1.191 17 H -0.210 1.210 18 H -0.166 1.166 19 C -0.143 4.143 20 N -0.153 5.153 21 H 0.067 0.933 22 H 0.068 0.932 23 H 0.118 0.882 24 H 0.111 0.889 25 H 0.141 0.859 26 H 0.215 0.785 27 H 0.059 0.941 28 H 0.099 0.901 29 H 0.157 0.843 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.040 0.960 35 H 0.038 0.962 36 H 0.075 0.925 37 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 1.500 -21.573 -17.781 27.997 hybrid contribution 0.767 1.773 0.326 1.959 sum 2.267 -19.800 -17.455 26.493 Atomic orbital electron populations 1.22010 0.93943 1.03903 1.01961 1.22018 0.96048 0.76190 1.05521 1.48985 1.35177 1.10935 1.20912 1.22803 0.94178 0.94747 0.95673 1.20078 1.09471 0.95603 1.00972 1.20087 0.93756 0.93710 0.91189 1.60562 1.10090 1.31951 1.29855 1.21888 0.95813 0.93047 0.95165 1.21271 0.97930 0.96913 0.96830 1.19491 0.95827 0.94894 0.94567 1.21556 0.97102 1.20816 1.17801 0.95451 1.26112 1.03648 0.95599 0.94337 1.70086 1.38927 1.27608 1.22995 0.85570 0.79059 0.79742 0.77730 1.19101 1.21040 1.16598 1.24106 0.95599 0.97831 0.96768 1.77219 1.24828 0.97949 1.15316 0.93329 0.93156 0.88203 0.88937 0.85850 0.78543 0.94149 0.90072 0.84336 0.94925 0.90901 0.93836 0.93497 0.95956 0.96225 0.92517 0.79110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 10.10 71.98 0.73 -1.25 16 2 C 0.12 1.42 7.23 86.38 0.62 2.04 16 3 N -0.38 -7.42 3.68 -348.06 -1.28 -8.70 16 4 C 0.07 1.41 11.36 83.54 0.95 2.35 16 5 C -0.25 -5.40 5.61 -20.14 -0.11 -5.51 16 6 C 0.14 3.08 6.17 85.56 0.53 3.61 16 7 N -0.69 -18.64 6.49 -517.94 -3.36 -22.00 16 8 C 0.07 2.14 5.69 86.31 0.49 2.63 16 9 C -0.09 -3.64 5.41 30.60 0.17 -3.48 16 10 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 11 C -0.53 -31.81 9.66 25.60 0.25 -31.56 16 12 H 0.03 1.80 7.99 -2.91 -0.02 1.77 16 13 C 0.00 -0.05 5.47 84.66 0.46 0.41 16 14 N -0.96 -61.35 13.96 21.45 0.30 -61.05 16 15 Si 0.96 44.72 27.47 68.60 1.88 46.61 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 18 H -0.24 -10.40 6.54 99.48 0.65 -9.75 16 19 C 0.04 0.96 11.96 85.24 1.02 1.98 16 20 N -0.33 -8.13 12.42 -57.02 -0.71 -8.84 16 21 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 22 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 23 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.12 0.72 8.07 -2.39 -0.02 0.71 16 26 H 0.20 2.58 8.06 -2.91 -0.02 2.56 16 27 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.34 9.14 8.72 -89.69 -0.78 8.36 16 30 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.02 1.02 7.20 -2.39 -0.02 1.01 16 35 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 36 H 0.27 15.86 8.31 -92.71 -0.77 15.08 16 37 H 0.19 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -72.61 312.86 2.25 -70.36 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.19 Total: 12.74 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: 5.22 Total: -29.12 kcal Atomic # 7 Polarization: -95.54 SS G_CDS: -5.05 Total: -100.59 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.61 kcal Total: -72.61 2.25 -70.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163966262.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.845 kcal (2) G-P(sol) polarization free energy of solvation -72.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds