Wall clock time and date at job start Sun Mar 29 2020 21:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99635 * 2 1 4 4 H 1.48504 * 109.47151 * 239.99437 * 3 2 1 5 5 H 1.48496 * 109.47482 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47145 * 120.00038 * 3 2 1 7 7 C 1.37873 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00250 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00173 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47355 * 179.97438 * 9 7 2 11 11 C 1.53100 * 109.52527 * 294.67399 * 10 9 7 12 12 C 1.53034 * 109.29029 * 182.43532 * 11 10 9 13 13 N 1.46845 * 109.51577 * 59.18741 * 12 11 10 14 14 C 1.46898 * 111.00004 * 174.16501 * 13 12 11 15 15 C 1.54256 * 110.03492 * 298.50123 * 14 13 12 16 16 C 1.54967 * 104.16382 * 217.14034 * 15 14 13 17 17 C 1.54884 * 102.77595 * 37.88694 * 16 15 14 18 18 C 1.53877 * 110.03017 * 181.28168 * 14 13 12 19 19 C 1.46852 * 111.19347 * 298.25886 * 13 12 11 20 20 C 1.53036 * 109.52339 * 61.74741 * 19 13 12 21 21 H 0.97005 * 120.00522 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47534 * 59.99180 * 9 7 2 23 23 H 1.09008 * 109.46410 * 299.99254 * 9 7 2 24 24 H 1.09000 * 109.52297 * 54.86829 * 10 9 7 25 25 H 1.09007 * 109.48924 * 62.49305 * 11 10 9 26 26 H 1.08997 * 109.50351 * 302.38589 * 11 10 9 27 27 H 1.08997 * 109.46477 * 299.16909 * 12 11 10 28 28 H 1.09004 * 109.45970 * 179.19221 * 12 11 10 29 29 H 1.09001 * 110.01785 * 59.89382 * 14 13 12 30 30 H 1.09007 * 110.48717 * 335.78750 * 15 14 13 31 31 H 1.09004 * 110.48748 * 98.42670 * 15 14 13 32 32 H 1.09000 * 110.71632 * 279.57065 * 16 15 14 33 33 H 1.08996 * 110.92214 * 156.29977 * 16 15 14 34 34 H 1.09002 * 110.48574 * 203.40810 * 17 16 15 35 35 H 1.08996 * 110.48814 * 80.76753 * 17 16 15 36 36 H 1.08996 * 110.03701 * 238.56733 * 18 14 13 37 37 H 1.08999 * 110.03762 * 0.02562 * 18 14 13 38 38 H 1.09006 * 109.45857 * 181.75949 * 19 13 12 39 39 H 1.08999 * 109.46651 * 301.73664 * 19 13 12 40 40 H 1.08999 * 109.50761 * 60.75754 * 20 19 13 41 41 H 1.08994 * 109.50446 * 180.87973 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 3.0357 -3.6595 -1.3107 12 6 3.9851 -4.8596 -1.3310 13 7 3.2097 -6.1006 -1.2086 14 6 4.0738 -7.2786 -1.3631 15 6 4.7195 -7.2803 -2.7640 16 6 4.7422 -8.7759 -3.1692 17 6 3.3987 -9.3034 -2.6073 18 6 3.2346 -8.5645 -1.2630 19 6 2.4794 -6.1470 0.0646 20 6 1.4851 -4.9853 0.1264 21 1 -0.4851 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8905 24 1 2.9314 -3.5547 0.8407 25 1 3.6126 -2.7377 -1.3858 26 1 2.3456 -3.7272 -2.1517 27 1 4.6838 -4.7841 -0.4978 28 1 4.5390 -4.8686 -2.2698 29 1 4.8475 -7.2770 -0.5953 30 1 4.1137 -6.7047 -3.4640 31 1 5.7328 -6.8814 -2.7175 32 1 5.5837 -9.2888 -2.7036 33 1 4.7771 -8.8850 -4.2531 34 1 3.4489 -10.3804 -2.4470 35 1 2.5793 -9.0550 -3.2817 36 1 3.6017 -9.1874 -0.4474 37 1 2.1862 -8.3146 -1.1003 38 1 1.9399 -7.0912 0.1395 39 1 3.1850 -6.0653 0.8913 40 1 0.7706 -5.0737 -0.6920 41 1 0.9543 -5.0108 1.0780 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168872839.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:34 Heat of formation + Delta-G solvation = -29.750478 kcal Electronic energy + Delta-G solvation = -17440.157849 eV Core-core repulsion = 14932.216998 eV Total energy + Delta-G solvation = -2507.940852 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.42103 -36.98167 -33.80629 -32.00403 -30.61923 -28.54793 -28.45174 -26.21283 -23.68779 -22.58335 -20.96340 -20.39426 -19.41586 -18.87733 -16.48466 -16.17711 -15.60325 -14.60297 -14.44941 -14.16330 -13.59234 -13.35438 -13.24512 -12.93535 -12.70445 -12.02003 -11.77208 -11.29751 -11.28378 -11.13636 -11.01703 -10.93315 -10.82577 -10.70584 -10.69001 -10.49867 -10.47380 -10.17537 -9.85615 -9.47003 -8.99025 -8.82233 -8.28882 -7.98608 -5.93848 -3.95251 3.35976 3.40513 3.42760 4.12515 4.50291 4.52962 4.62778 4.91434 5.31126 5.37146 5.41045 5.41696 5.46018 5.55384 5.59551 5.61520 5.72855 5.79314 5.85096 5.87431 5.93868 5.99901 6.05721 6.12450 6.18893 6.21387 6.31081 6.34477 6.53416 6.65203 6.74753 7.04333 7.17002 7.25455 7.47569 7.50089 7.74480 7.91957 8.07207 8.50480 9.11143 9.67947 11.17496 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.049800 B = 0.004847 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.112950 B = 5775.543132 C = 6095.575908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.099 4.099 12 C 0.055 3.945 13 N -0.529 5.529 14 C 0.079 3.921 15 C -0.117 4.117 16 C -0.124 4.124 17 C -0.120 4.120 18 C -0.122 4.122 19 C 0.055 3.945 20 C -0.111 4.111 21 H 0.260 0.740 22 H 0.016 0.984 23 H 0.013 0.987 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.024 0.976 28 H 0.066 0.934 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.025 0.975 40 H 0.065 0.935 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.914 -16.741 -3.786 18.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.137 4.137 12 C -0.072 4.072 13 N -0.254 5.254 14 C -0.030 4.030 15 C -0.155 4.155 16 C -0.161 4.161 17 C -0.158 4.158 18 C -0.160 4.160 19 C -0.072 4.072 20 C -0.149 4.149 21 H 0.069 0.931 22 H 0.035 0.965 23 H 0.032 0.968 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.043 0.957 40 H 0.083 0.917 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.413 -16.618 -4.151 18.664 hybrid contribution 1.074 1.034 0.754 1.670 sum 8.487 -15.584 -3.397 18.068 Atomic orbital electron populations 1.69956 1.06018 1.26528 1.51127 1.25010 0.94790 0.99083 0.95564 0.86719 0.79618 0.83474 0.78533 1.20298 1.21368 1.20372 1.21226 0.92868 0.91075 1.50090 0.92805 1.19112 0.93629 0.91054 0.97070 1.21228 0.97871 0.94775 0.96128 1.21537 0.97843 0.95502 0.98798 1.22198 0.95330 0.90034 0.99678 1.62126 1.27733 1.01409 1.34180 1.22259 0.93463 0.90672 0.96562 1.22454 0.99985 0.96492 0.96552 1.22471 0.97486 0.95867 1.00322 1.22299 0.97664 0.98937 0.96854 1.22289 1.01249 0.95137 0.97292 1.22166 0.96435 0.99447 0.89195 1.21686 0.97553 0.94334 1.01353 0.93066 0.96532 0.96825 0.93172 0.91035 0.91916 0.95751 0.91528 0.94663 0.90221 0.92186 0.91942 0.91690 0.92158 0.91422 0.92301 0.90395 0.91323 0.95694 0.91662 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.51 -14.53 8.44 -34.44 -0.29 -14.82 16 8 H 0.05 1.48 7.08 -52.48 -0.37 1.10 16 9 C 0.03 0.74 4.45 -27.88 -0.12 0.61 16 10 C -0.08 -1.70 2.20 -90.51 -0.20 -1.90 16 11 C -0.10 -1.91 5.15 -26.66 -0.14 -2.05 16 12 C 0.06 0.88 5.29 -3.84 -0.02 0.86 16 13 N -0.53 -7.95 4.44 -225.36 -1.00 -8.95 16 14 C 0.08 0.99 2.67 -66.60 -0.18 0.81 16 15 C -0.12 -1.31 5.15 -25.04 -0.13 -1.44 16 16 C -0.12 -1.15 6.91 -24.70 -0.17 -1.32 16 17 C -0.12 -1.15 6.83 -25.07 -0.17 -1.32 16 18 C -0.12 -1.33 5.87 -25.61 -0.15 -1.49 16 19 C 0.06 0.84 5.17 -3.83 -0.02 0.82 16 20 C -0.11 -2.00 5.38 -26.65 -0.14 -2.14 16 21 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.01 0.38 8.14 -51.92 -0.42 -0.05 16 24 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.07 1.46 7.05 -51.92 -0.37 1.10 16 26 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.97 6.84 -51.93 -0.36 0.62 16 29 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.99 7.85 -51.93 -0.41 0.58 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.92 6.19 -51.93 -0.32 0.60 16 38 H 0.07 0.93 5.98 -51.93 -0.31 0.62 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 309.00 15.07 4.66 4.66 Total: -1.00 -29.43 309.00 -10.07 -39.50 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -7.61 Total: -3.69 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -1.83 Total: -21.84 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: -0.26 Total: -35.46 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.43 -10.07 -39.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168872839.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.748 kcal (2) G-P(sol) polarization free energy of solvation -29.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds