Wall clock time and date at job start Sun Mar 29 2020 21:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99635 * 2 1 4 4 H 1.48504 * 109.47151 * 239.99437 * 3 2 1 5 5 H 1.48496 * 109.47482 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47145 * 120.00038 * 3 2 1 7 7 C 1.37873 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00250 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00173 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47355 * 179.97438 * 9 7 2 11 11 C 1.53100 * 109.52527 * 294.67399 * 10 9 7 12 12 C 1.53034 * 109.29029 * 182.43532 * 11 10 9 13 13 N 1.46845 * 109.51577 * 59.18741 * 12 11 10 14 14 C 1.46898 * 111.00004 * 174.16501 * 13 12 11 15 15 C 1.54256 * 110.03492 * 298.50123 * 14 13 12 16 16 C 1.54967 * 104.16382 * 217.14034 * 15 14 13 17 17 C 1.54884 * 102.77595 * 37.88694 * 16 15 14 18 18 C 1.53877 * 110.03017 * 181.28168 * 14 13 12 19 19 C 1.46852 * 111.19347 * 298.25886 * 13 12 11 20 20 C 1.53036 * 109.52339 * 61.74741 * 19 13 12 21 21 H 0.97005 * 120.00522 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47534 * 59.99180 * 9 7 2 23 23 H 1.09008 * 109.46410 * 299.99254 * 9 7 2 24 24 H 1.09000 * 109.52297 * 54.86829 * 10 9 7 25 25 H 1.09007 * 109.48924 * 62.49305 * 11 10 9 26 26 H 1.08997 * 109.50351 * 302.38589 * 11 10 9 27 27 H 1.08997 * 109.46477 * 299.16909 * 12 11 10 28 28 H 1.09004 * 109.45970 * 179.19221 * 12 11 10 29 29 H 1.09001 * 110.01785 * 59.89382 * 14 13 12 30 30 H 1.09007 * 110.48717 * 335.78750 * 15 14 13 31 31 H 1.09004 * 110.48748 * 98.42670 * 15 14 13 32 32 H 1.09000 * 110.71632 * 279.57065 * 16 15 14 33 33 H 1.08996 * 110.92214 * 156.29977 * 16 15 14 34 34 H 1.09002 * 110.48574 * 203.40810 * 17 16 15 35 35 H 1.08996 * 110.48814 * 80.76753 * 17 16 15 36 36 H 1.08996 * 110.03701 * 238.56733 * 18 14 13 37 37 H 1.08999 * 110.03762 * 0.02562 * 18 14 13 38 38 H 1.09006 * 109.45857 * 181.75949 * 19 13 12 39 39 H 1.08999 * 109.46651 * 301.73664 * 19 13 12 40 40 H 1.08999 * 109.50761 * 60.75754 * 20 19 13 41 41 H 1.08994 * 109.50446 * 180.87973 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 3.0357 -3.6595 -1.3107 12 6 3.9851 -4.8596 -1.3310 13 7 3.2097 -6.1006 -1.2086 14 6 4.0738 -7.2786 -1.3631 15 6 4.7195 -7.2803 -2.7640 16 6 4.7422 -8.7759 -3.1692 17 6 3.3987 -9.3034 -2.6073 18 6 3.2346 -8.5645 -1.2630 19 6 2.4794 -6.1470 0.0646 20 6 1.4851 -4.9853 0.1264 21 1 -0.4851 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8905 24 1 2.9314 -3.5547 0.8407 25 1 3.6126 -2.7377 -1.3858 26 1 2.3456 -3.7272 -2.1517 27 1 4.6838 -4.7841 -0.4978 28 1 4.5390 -4.8686 -2.2698 29 1 4.8475 -7.2770 -0.5953 30 1 4.1137 -6.7047 -3.4640 31 1 5.7328 -6.8814 -2.7175 32 1 5.5837 -9.2888 -2.7036 33 1 4.7771 -8.8850 -4.2531 34 1 3.4489 -10.3804 -2.4470 35 1 2.5793 -9.0550 -3.2817 36 1 3.6017 -9.1874 -0.4474 37 1 2.1862 -8.3146 -1.1003 38 1 1.9399 -7.0912 0.1395 39 1 3.1850 -6.0653 0.8913 40 1 0.7706 -5.0737 -0.6920 41 1 0.9543 -5.0108 1.0780 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168872839.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:34 Heat of formation + Delta-G solvation = -45.958803 kcal Electronic energy + Delta-G solvation = -17440.860695 eV Core-core repulsion = 14932.216998 eV Total energy + Delta-G solvation = -2508.643697 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.59378 -38.20292 -35.53045 -33.84381 -31.95496 -30.07222 -29.43054 -27.63210 -25.44536 -23.94328 -22.60532 -21.23390 -20.53869 -20.36502 -18.41199 -17.55971 -16.61332 -16.38786 -15.73620 -15.35154 -15.08458 -14.69585 -14.59858 -14.17994 -14.16500 -13.75634 -13.24405 -13.03025 -12.79176 -12.55602 -12.43671 -12.09562 -12.04259 -11.94750 -11.85031 -11.78987 -11.70406 -11.51637 -11.34465 -11.23134 -10.84918 -10.65203 -10.51263 -9.17347 -8.16933 -6.26901 1.39364 1.42329 1.50065 2.41983 2.97410 3.15997 3.67352 3.80440 4.01008 4.08205 4.10172 4.15139 4.37183 4.51611 4.54030 4.60410 4.67351 4.67860 4.72485 4.83040 4.83579 4.87453 4.96488 5.03570 5.08262 5.11980 5.17321 5.26322 5.31433 5.34330 5.39485 5.43522 5.45527 5.54555 5.57403 5.81104 5.89379 6.22380 6.29111 6.37315 6.88800 7.41429 8.94883 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.049800 B = 0.004847 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.112950 B = 5775.543132 C = 6095.575908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.961 3.039 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.034 3.966 10 C -0.075 4.075 11 C -0.093 4.093 12 C 0.066 3.934 13 N -0.539 5.539 14 C 0.076 3.924 15 C -0.118 4.118 16 C -0.118 4.118 17 C -0.118 4.118 18 C -0.121 4.121 19 C 0.063 3.937 20 C -0.107 4.107 21 H 0.262 0.738 22 H -0.013 1.013 23 H -0.015 1.015 24 H 0.045 0.955 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.026 0.974 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.027 0.973 40 H 0.054 0.946 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.797 -17.983 -4.051 20.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.569 4.569 8 H 0.078 0.922 9 C -0.003 4.003 10 C -0.093 4.093 11 C -0.131 4.131 12 C -0.062 4.062 13 N -0.264 5.264 14 C -0.032 4.032 15 C -0.156 4.156 16 C -0.156 4.156 17 C -0.156 4.156 18 C -0.159 4.159 19 C -0.065 4.065 20 C -0.144 4.144 21 H 0.071 0.929 22 H 0.006 0.994 23 H 0.004 0.996 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.310 -17.880 -4.418 20.637 hybrid contribution 0.438 1.408 0.836 1.695 sum 9.748 -16.472 -3.581 19.473 Atomic orbital electron populations 1.70100 1.07816 1.27639 1.52082 1.25957 0.95694 1.03219 0.95004 0.85564 0.78316 0.78415 0.79140 1.19158 1.20945 1.19279 1.21617 0.93336 0.92148 1.49816 0.92241 1.19000 0.93982 0.93064 0.94214 1.21083 0.96911 0.94382 0.96972 1.21406 0.97824 0.96776 0.97091 1.22025 0.94380 0.89107 1.00667 1.62110 1.28416 1.01916 1.33952 1.22395 0.93386 0.90037 0.97376 1.22456 0.99853 0.97880 0.95371 1.22460 0.97720 0.94333 1.01047 1.22299 0.97585 0.99830 0.95869 1.22294 1.00286 0.94644 0.98653 1.22075 0.95941 0.98896 0.89545 1.21596 0.97849 0.93933 1.01063 0.92922 0.99431 0.99649 0.93615 0.92592 0.93334 0.95544 0.89877 0.94551 0.91648 0.91559 0.90737 0.90778 0.90462 0.92147 0.90954 0.91429 0.89107 0.95428 0.92703 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.28 13.29 21.45 0.28 -57.99 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 3 Si 0.96 45.05 29.54 68.60 2.03 47.07 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.53 -30.70 8.44 25.60 0.22 -30.48 16 8 H 0.06 3.29 7.08 -2.91 -0.02 3.27 16 9 C 0.03 1.88 4.45 29.85 0.13 2.01 16 10 C -0.07 -3.20 2.20 -10.72 -0.02 -3.23 16 11 C -0.09 -3.63 5.15 30.64 0.16 -3.47 16 12 C 0.07 2.03 5.29 86.33 0.46 2.49 16 13 N -0.54 -15.36 4.44 -866.89 -3.85 -19.21 16 14 C 0.08 1.72 2.67 45.64 0.12 1.84 16 15 C -0.12 -2.36 5.15 31.69 0.16 -2.19 16 16 C -0.12 -1.84 6.91 31.91 0.22 -1.62 16 17 C -0.12 -1.93 6.83 31.67 0.22 -1.72 16 18 C -0.12 -2.33 5.87 31.32 0.18 -2.14 16 19 C 0.06 1.83 5.17 86.32 0.45 2.28 16 20 C -0.11 -3.84 5.38 30.65 0.16 -3.67 16 21 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 22 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 23 H -0.01 -0.88 8.14 -2.38 -0.02 -0.90 16 24 H 0.05 1.98 8.14 -2.39 -0.02 1.97 16 25 H 0.06 2.32 7.05 -2.38 -0.02 2.30 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.08 2.30 6.84 -2.38 -0.02 2.28 16 29 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 1.51 7.85 -2.38 -0.02 1.49 16 31 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.07 1.45 6.19 -2.39 -0.01 1.43 16 38 H 0.09 2.27 5.98 -2.38 -0.01 2.26 16 39 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -64.02 309.00 2.34 -61.68 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: 0.96 Total: 7.98 kcal Atomic # 6 Polarization: -42.45 SS G_CDS: 2.92 Total: -39.53 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -3.56 Total: -77.20 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -64.02 2.34 -61.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168872839.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.722 kcal (2) G-P(sol) polarization free energy of solvation -64.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds