Wall clock time and date at job start Sun Mar 29 2020 21:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99879 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99601 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99458 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99799 * 3 2 1 7 7 C 1.37876 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99844 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46626 * 179.97438 * 11 10 9 13 13 C 1.48488 * 110.99794 * 285.61589 * 12 11 10 14 14 C 1.55434 * 105.20966 * 204.03572 * 13 12 11 15 15 H 1.09002 * 108.85942 * 260.43537 * 14 13 12 16 16 C 1.51563 * 107.53602 * 141.81467 * 14 13 12 17 17 C 1.52214 * 112.93132 * 209.83195 * 16 14 13 18 18 C 1.53484 * 107.96464 * 58.56184 * 17 16 14 19 19 C 1.50593 * 107.38208 * 291.43067 * 18 17 16 20 20 C 1.49326 * 114.48281 * 54.15272 * 19 18 17 21 21 H 1.08993 * 105.82345 * 211.52329 * 20 19 18 22 22 C 1.49006 * 110.99478 * 170.00335 * 12 11 10 23 23 H 0.96991 * 119.99882 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 25 25 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 26 26 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 27 27 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 28 28 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 29 29 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 30 30 H 1.09003 * 110.29681 * 322.97078 * 13 12 11 31 31 H 1.09000 * 110.29208 * 85.10493 * 13 12 11 32 32 H 1.09004 * 108.78601 * 330.71885 * 16 14 13 33 33 H 1.09003 * 108.79077 * 89.04834 * 16 14 13 34 34 H 1.09001 * 109.76647 * 178.18180 * 17 16 14 35 35 H 1.09010 * 109.75905 * 298.94768 * 17 16 14 36 36 H 1.08997 * 109.84956 * 50.58654 * 18 17 16 37 37 H 1.08996 * 109.85546 * 171.52924 * 18 17 16 38 38 H 1.08999 * 108.28079 * 292.71074 * 19 18 17 39 39 H 1.09007 * 107.95056 * 175.35827 * 19 18 17 40 40 H 1.08999 * 110.68848 * 278.39440 * 22 12 11 41 41 H 1.08986 * 110.69747 * 41.59955 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0022 12 7 6.0413 -4.0214 0.0027 13 6 5.8657 -4.6474 1.3377 14 6 6.9233 -5.7849 1.3970 15 1 6.4338 -6.7331 1.1749 16 6 7.4790 -5.8187 2.8067 17 6 8.9206 -6.3042 2.8644 18 6 9.7708 -5.3668 1.9960 19 6 9.3704 -5.5952 0.5624 20 6 7.9075 -5.4537 0.2984 21 1 7.6835 -6.1465 -0.5126 22 6 7.5111 -4.0681 -0.2376 23 1 -0.4849 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8911 25 1 3.8753 -0.6803 -0.8888 26 1 3.6587 -3.1502 -0.8892 27 1 3.6580 -3.1505 0.8907 28 1 5.9157 -2.1223 -0.8873 29 1 5.9142 -2.1228 0.8927 30 1 6.0515 -3.9169 2.1252 31 1 4.8612 -5.0597 1.4328 32 1 7.4296 -4.8145 3.2277 33 1 6.8619 -6.4832 3.4115 34 1 9.2775 -6.2776 3.8940 35 1 8.9825 -7.3217 2.4783 36 1 9.5757 -4.3300 2.2699 37 1 10.8282 -5.5930 2.1329 38 1 9.6818 -6.5998 0.2763 39 1 9.9085 -4.8760 -0.0553 40 1 7.7299 -3.9901 -1.3025 41 1 8.0177 -3.2803 0.3195 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177563716.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:06 Heat of formation + Delta-G solvation = -25.878525 kcal Electronic energy + Delta-G solvation = -17153.818071 eV Core-core repulsion = 14646.045119 eV Total energy + Delta-G solvation = -2507.772951 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.18151 -36.50821 -33.91661 -32.20399 -32.08752 -30.21932 -27.16506 -26.63263 -23.58228 -22.25712 -21.93809 -20.86099 -19.85688 -18.41751 -16.66739 -16.37891 -15.37243 -14.93313 -14.73487 -14.31666 -13.99016 -13.79708 -13.26689 -13.12972 -12.69377 -12.55868 -12.42073 -11.83339 -11.77643 -11.54798 -11.35093 -11.14730 -10.97334 -10.89208 -10.66832 -10.34248 -10.14341 -10.03177 -9.86892 -9.64046 -9.51040 -9.13082 -8.49979 -8.23851 -6.00343 -3.97765 3.32992 3.39930 3.43948 4.15527 4.38244 4.43760 4.48528 4.68683 4.87161 4.94439 5.02669 5.26027 5.28775 5.33511 5.38202 5.46752 5.56214 5.62536 5.69778 5.73216 5.78541 5.83666 5.89805 5.92327 5.94580 6.01880 6.15982 6.20454 6.24278 6.31790 6.35061 6.57356 6.62933 6.94139 7.10614 7.29761 7.40414 7.51658 7.84627 8.59608 9.05520 9.62466 11.13351 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.047096 B = 0.004358 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.389313 B = 6423.693634 C = 6546.437364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.517 4.517 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.094 4.094 11 C 0.043 3.957 12 N -0.513 5.513 13 C 0.035 3.965 14 C -0.080 4.080 15 H 0.074 0.926 16 C -0.113 4.113 17 C -0.118 4.118 18 C -0.119 4.119 19 C -0.103 4.103 20 C -0.083 4.083 21 H 0.062 0.938 22 C 0.037 3.963 23 H 0.262 0.738 24 H 0.012 0.988 25 H 0.010 0.990 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.030 0.970 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.371 -11.637 3.861 23.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.090 0.910 9 C -0.052 4.052 10 C -0.132 4.132 11 C -0.085 4.085 12 N -0.236 5.236 13 C -0.093 4.093 14 C -0.099 4.099 15 H 0.092 0.908 16 C -0.151 4.151 17 C -0.155 4.155 18 C -0.157 4.157 19 C -0.141 4.141 20 C -0.102 4.102 21 H 0.081 0.919 22 C -0.091 4.091 23 H 0.072 0.928 24 H 0.031 0.969 25 H 0.029 0.971 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 19.882 -11.790 3.419 23.366 hybrid contribution 0.652 1.464 0.553 1.695 sum 20.534 -10.327 3.971 23.325 Atomic orbital electron populations 1.69919 1.06288 1.26793 1.51463 1.25040 0.94727 0.99143 0.94678 0.86769 0.80309 0.83660 0.78477 1.20296 1.21431 1.19129 1.21157 0.89534 0.94447 1.50389 0.91036 1.19561 0.97164 0.92429 0.96007 1.21401 0.90872 0.99359 1.01586 1.22480 0.98339 0.87484 1.00148 1.65465 1.12526 1.18297 1.27292 1.23611 0.99614 0.95573 0.90533 1.21088 0.95488 0.99204 0.94136 0.90764 1.21222 0.96106 1.01660 0.96078 1.21477 0.95263 0.99201 0.99576 1.21207 0.99026 0.99939 0.95485 1.20239 0.94965 1.01735 0.97131 1.20241 0.94044 0.97737 0.98217 0.91913 1.23201 0.89221 0.96036 1.00626 0.92805 0.96934 0.97125 0.92058 0.93018 0.91370 0.95154 0.93689 0.90138 0.92128 0.92088 0.92101 0.91935 0.91994 0.91940 0.92276 0.92105 0.90322 0.94170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.53 13.96 55.43 0.77 -27.75 16 2 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 8 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 10 C -0.09 -1.97 5.27 -26.73 -0.14 -2.11 16 11 C 0.04 0.75 4.85 -3.82 -0.02 0.73 16 12 N -0.51 -7.85 5.33 -229.35 -1.22 -9.08 16 13 C 0.03 0.48 5.42 -1.65 -0.01 0.47 16 14 C -0.08 -0.89 3.24 -90.97 -0.29 -1.19 16 15 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 16 C -0.11 -1.09 5.26 -27.86 -0.15 -1.24 16 17 C -0.12 -0.97 5.97 -26.88 -0.16 -1.13 16 18 C -0.12 -0.99 6.02 -27.68 -0.17 -1.16 16 19 C -0.10 -0.90 5.23 -29.74 -0.16 -1.06 16 20 C -0.08 -0.89 2.58 -92.96 -0.24 -1.13 16 21 H 0.06 0.70 8.03 -51.93 -0.42 0.28 16 22 C 0.04 0.47 5.82 -2.26 -0.01 0.46 16 23 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 24 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 25 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 26 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 27 H 0.05 1.09 7.54 -51.93 -0.39 0.70 16 28 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 29 H 0.03 0.52 7.74 -51.93 -0.40 0.12 16 30 H 0.04 0.64 6.71 -51.93 -0.35 0.29 16 31 H 0.08 1.17 7.96 -51.93 -0.41 0.76 16 32 H 0.06 0.63 7.14 -51.93 -0.37 0.26 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.50 8.09 -51.92 -0.42 0.08 16 36 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.51 7.83 -51.93 -0.41 0.10 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.04 0.50 8.03 -51.94 -0.42 0.09 16 LS Contribution 309.65 15.07 4.67 4.67 Total: -1.00 -30.78 309.65 -10.08 -40.86 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -7.74 Total: -4.71 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -1.89 Total: -21.52 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: -0.45 Total: -36.83 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.78 -10.08 -40.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177563716.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.980 kcal (2) G-P(sol) polarization free energy of solvation -30.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds