Wall clock time and date at job start Sun Mar 29 2020 21:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99879 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99601 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99458 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99799 * 3 2 1 7 7 C 1.37876 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99844 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46626 * 179.97438 * 11 10 9 13 13 C 1.48488 * 110.99794 * 285.61589 * 12 11 10 14 14 C 1.55434 * 105.20966 * 204.03572 * 13 12 11 15 15 H 1.09002 * 108.85942 * 260.43537 * 14 13 12 16 16 C 1.51563 * 107.53602 * 141.81467 * 14 13 12 17 17 C 1.52214 * 112.93132 * 209.83195 * 16 14 13 18 18 C 1.53484 * 107.96464 * 58.56184 * 17 16 14 19 19 C 1.50593 * 107.38208 * 291.43067 * 18 17 16 20 20 C 1.49326 * 114.48281 * 54.15272 * 19 18 17 21 21 H 1.08993 * 105.82345 * 211.52329 * 20 19 18 22 22 C 1.49006 * 110.99478 * 170.00335 * 12 11 10 23 23 H 0.96991 * 119.99882 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 25 25 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 26 26 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 27 27 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 28 28 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 29 29 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 30 30 H 1.09003 * 110.29681 * 322.97078 * 13 12 11 31 31 H 1.09000 * 110.29208 * 85.10493 * 13 12 11 32 32 H 1.09004 * 108.78601 * 330.71885 * 16 14 13 33 33 H 1.09003 * 108.79077 * 89.04834 * 16 14 13 34 34 H 1.09001 * 109.76647 * 178.18180 * 17 16 14 35 35 H 1.09010 * 109.75905 * 298.94768 * 17 16 14 36 36 H 1.08997 * 109.84956 * 50.58654 * 18 17 16 37 37 H 1.08996 * 109.85546 * 171.52924 * 18 17 16 38 38 H 1.08999 * 108.28079 * 292.71074 * 19 18 17 39 39 H 1.09007 * 107.95056 * 175.35827 * 19 18 17 40 40 H 1.08999 * 110.68848 * 278.39440 * 22 12 11 41 41 H 1.08986 * 110.69747 * 41.59955 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0022 12 7 6.0413 -4.0214 0.0027 13 6 5.8657 -4.6474 1.3377 14 6 6.9233 -5.7849 1.3970 15 1 6.4338 -6.7331 1.1749 16 6 7.4790 -5.8187 2.8067 17 6 8.9206 -6.3042 2.8644 18 6 9.7708 -5.3668 1.9960 19 6 9.3704 -5.5952 0.5624 20 6 7.9075 -5.4537 0.2984 21 1 7.6835 -6.1465 -0.5126 22 6 7.5111 -4.0681 -0.2376 23 1 -0.4849 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8911 25 1 3.8753 -0.6803 -0.8888 26 1 3.6587 -3.1502 -0.8892 27 1 3.6580 -3.1505 0.8907 28 1 5.9157 -2.1223 -0.8873 29 1 5.9142 -2.1228 0.8927 30 1 6.0515 -3.9169 2.1252 31 1 4.8612 -5.0597 1.4328 32 1 7.4296 -4.8145 3.2277 33 1 6.8619 -6.4832 3.4115 34 1 9.2775 -6.2776 3.8940 35 1 8.9825 -7.3217 2.4783 36 1 9.5757 -4.3300 2.2699 37 1 10.8282 -5.5930 2.1329 38 1 9.6818 -6.5998 0.2763 39 1 9.9085 -4.8760 -0.0553 40 1 7.7299 -3.9901 -1.3025 41 1 8.0177 -3.2803 0.3195 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177563716.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:06 Heat of formation + Delta-G solvation = -44.335382 kcal Electronic energy + Delta-G solvation = -17154.618420 eV Core-core repulsion = 14646.045119 eV Total energy + Delta-G solvation = -2508.573301 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.11563 -37.62998 -35.68812 -33.93519 -33.00331 -31.60545 -28.46635 -27.94858 -25.02425 -23.21569 -22.81280 -22.34484 -21.43020 -19.23450 -18.88382 -17.30046 -16.64333 -16.19441 -16.07438 -15.68142 -15.06399 -14.89977 -14.81993 -14.33471 -14.11694 -13.63860 -13.56397 -13.34828 -13.08458 -12.73128 -12.64358 -12.34353 -12.28853 -11.94795 -11.90981 -11.76286 -11.47504 -11.41258 -11.31846 -11.07609 -10.86332 -10.82163 -10.77593 -9.43329 -8.30671 -6.35374 1.34782 1.36985 1.49245 2.35458 3.02618 3.04292 3.47907 3.61456 3.85329 4.07326 4.09845 4.18635 4.23714 4.34359 4.47639 4.52444 4.55595 4.63338 4.66023 4.72140 4.80359 4.84514 4.89668 4.92483 5.00134 5.07013 5.07705 5.15495 5.20065 5.27210 5.38345 5.44155 5.47489 5.52364 5.57210 5.59333 5.64402 5.97068 6.08083 6.28707 6.72519 7.29201 8.86554 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.047096 B = 0.004358 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.389313 B = 6423.693634 C = 6546.437364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.955 3.045 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.247 1.247 7 C -0.535 4.535 8 H 0.027 0.973 9 C -0.009 4.009 10 C -0.085 4.085 11 C 0.055 3.945 12 N -0.529 5.529 13 C 0.031 3.969 14 C -0.074 4.074 15 H 0.074 0.926 16 C -0.111 4.111 17 C -0.115 4.115 18 C -0.118 4.118 19 C -0.101 4.101 20 C -0.077 4.077 21 H 0.059 0.941 22 C 0.037 3.963 23 H 0.267 0.733 24 H 0.019 0.981 25 H 0.020 0.980 26 H 0.046 0.954 27 H 0.040 0.960 28 H 0.076 0.924 29 H 0.034 0.966 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.415 -11.252 4.057 26.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.778 3.222 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.573 4.573 8 H 0.046 0.954 9 C -0.047 4.047 10 C -0.123 4.123 11 C -0.073 4.073 12 N -0.252 5.252 13 C -0.097 4.097 14 C -0.093 4.093 15 H 0.093 0.907 16 C -0.149 4.149 17 C -0.152 4.152 18 C -0.156 4.156 19 C -0.139 4.139 20 C -0.096 4.096 21 H 0.077 0.923 22 C -0.090 4.090 23 H 0.076 0.924 24 H 0.037 0.963 25 H 0.039 0.961 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 22.944 -11.430 3.615 25.887 hybrid contribution -0.398 1.249 0.487 1.398 sum 22.545 -10.181 4.101 25.075 Atomic orbital electron populations 1.70077 1.08387 1.28249 1.52643 1.26079 0.95679 1.03716 0.93969 0.85584 0.79402 0.77853 0.79348 1.18921 1.20772 1.17028 1.21498 0.92219 0.93050 1.50549 0.95447 1.19492 0.93865 0.94883 0.96464 1.21214 0.93863 0.96813 1.00387 1.22227 0.95279 0.89059 1.00719 1.65387 1.14741 1.16898 1.28181 1.23651 0.99845 0.96384 0.89807 1.21074 0.94879 0.97926 0.95405 0.90728 1.21200 0.97408 1.01406 0.94905 1.21475 0.93959 0.99450 1.00348 1.21216 0.99979 0.99371 0.94992 1.20227 0.93271 1.02690 0.97706 1.20239 0.95342 0.96328 0.97720 0.92263 1.23285 0.87192 0.97317 1.01245 0.92429 0.96310 0.96121 0.93510 0.94077 0.90568 0.94736 0.94074 0.91742 0.92999 0.91653 0.91091 0.91259 0.92926 0.90316 0.91072 0.91467 0.89675 0.93802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.45 13.96 21.45 0.30 -61.15 16 2 C 0.00 0.12 5.47 84.65 0.46 0.59 16 3 Si 0.96 45.25 27.47 68.60 1.88 47.14 16 4 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 7 C -0.54 -32.33 9.66 25.60 0.25 -32.08 16 8 H 0.03 1.83 7.99 -2.91 -0.02 1.80 16 9 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 10 C -0.08 -3.58 5.27 30.60 0.16 -3.41 16 11 C 0.06 1.86 4.85 86.31 0.42 2.28 16 12 N -0.53 -15.78 5.33 -879.52 -4.69 -20.47 16 13 C 0.03 0.85 5.42 86.83 0.47 1.33 16 14 C -0.07 -1.55 3.24 -11.02 -0.04 -1.59 16 15 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 16 C -0.11 -1.97 5.26 29.86 0.16 -1.82 16 17 C -0.11 -1.59 5.97 30.50 0.18 -1.41 16 18 C -0.12 -1.62 6.02 29.98 0.18 -1.44 16 19 C -0.10 -1.48 5.23 28.64 0.15 -1.33 16 20 C -0.08 -1.50 2.58 -12.31 -0.03 -1.54 16 21 H 0.06 1.20 8.03 -2.39 -0.02 1.18 16 22 C 0.04 0.87 5.82 86.15 0.50 1.37 16 23 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 24 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 25 H 0.02 0.97 7.57 -2.39 -0.02 0.95 16 26 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.04 1.78 7.54 -2.39 -0.02 1.76 16 28 H 0.08 2.43 8.08 -2.39 -0.02 2.41 16 29 H 0.03 1.13 7.74 -2.39 -0.02 1.11 16 30 H 0.04 1.15 6.71 -2.39 -0.02 1.13 16 31 H 0.06 1.93 7.96 -2.39 -0.02 1.91 16 32 H 0.05 1.01 7.14 -2.39 -0.02 1.00 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 0.89 8.09 -2.38 -0.02 0.87 16 36 H 0.05 0.83 8.10 -2.39 -0.02 0.81 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 0.92 7.83 -2.38 -0.02 0.90 16 40 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.04 1.00 8.03 -2.39 -0.02 0.98 16 Total: -1.00 -67.01 309.65 1.37 -65.64 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 0.90 Total: 8.24 kcal Atomic # 6 Polarization: -42.38 SS G_CDS: 2.98 Total: -39.39 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -4.39 Total: -81.62 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.88 Total: 47.14 kcal Total: -67.01 1.37 -65.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177563716.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.301 kcal (2) G-P(sol) polarization free energy of solvation -67.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds