Wall clock time and date at job start Sun Mar 29 2020 22:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50695 * 109.47081 * 2 1 4 4 C 1.31007 * 120.00001 * 125.00133 * 3 2 1 5 5 C 1.50695 * 120.00001 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47082 * 125.00158 * 5 4 3 7 7 N 1.46504 * 109.47161 * 179.97438 * 6 5 4 8 8 C 1.36936 * 120.00257 * 263.29520 * 7 6 5 9 9 H 1.07995 * 120.00202 * 187.71036 * 8 7 6 10 10 C 1.38816 * 119.99692 * 7.70345 * 8 7 6 11 11 N 1.31619 * 120.00000 * 26.65604 * 10 8 7 12 12 Si 1.86799 * 119.99964 * 206.64964 * 10 8 7 13 13 H 1.48499 * 109.46752 * 84.99110 * 12 10 8 14 14 H 1.48500 * 109.47101 * 204.98864 * 12 10 8 15 15 H 1.48499 * 109.47286 * 324.99297 * 12 10 8 16 16 C 1.46501 * 119.99779 * 83.29286 * 7 6 5 17 17 C 1.54966 * 110.92141 * 126.54246 * 16 7 6 18 18 C 1.54268 * 104.15885 * 156.29290 * 17 16 7 19 19 C 1.53879 * 106.64124 * 336.44542 * 18 17 16 20 20 C 1.54268 * 106.59672 * 359.97398 * 19 18 17 21 21 H 1.08997 * 109.46733 * 299.99504 * 1 2 3 22 22 H 1.08991 * 109.47000 * 59.99533 * 1 2 3 23 23 H 1.08998 * 109.46867 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47148 * 239.99908 * 2 1 3 25 25 H 1.09003 * 109.47194 * 120.00093 * 2 1 3 26 26 H 1.08002 * 120.00283 * 304.99908 * 3 2 1 27 27 H 1.08002 * 119.99716 * 359.97438 * 4 3 2 28 28 H 1.08997 * 109.47086 * 4.99941 * 5 4 3 29 29 H 1.09001 * 109.47132 * 245.00016 * 5 4 3 30 30 H 1.08997 * 109.47337 * 59.99936 * 6 5 4 31 31 H 1.09001 * 109.47021 * 299.99926 * 6 5 4 32 32 H 0.97001 * 120.00020 * 180.02562 * 11 10 8 33 33 H 1.09002 * 110.67664 * 3.23284 * 16 7 6 34 34 H 1.08995 * 110.47690 * 37.64394 * 17 16 7 35 35 H 1.08995 * 110.52844 * 274.96962 * 17 16 7 36 36 H 1.08999 * 110.03643 * 217.13416 * 18 17 16 37 37 H 1.08999 * 110.03166 * 95.75113 * 18 17 16 38 38 H 1.09007 * 110.03199 * 119.25962 * 19 18 17 39 39 H 1.09003 * 110.02860 * 240.63869 * 19 18 17 40 40 H 1.09001 * 110.48458 * 142.28825 * 20 19 18 41 41 H 1.08994 * 110.48476 * 264.79765 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8643 1.8214 0.9294 5 6 3.3670 3.2420 0.9290 6 6 3.0720 3.8878 2.2843 7 7 3.5613 5.2687 2.2842 8 6 4.7884 5.5603 2.8174 9 1 5.0970 6.5890 2.9313 10 6 5.6356 4.5338 3.2117 11 7 5.5478 3.3517 2.6396 12 14 6.9003 4.8301 4.5541 13 1 6.2685 4.6275 5.8827 14 1 8.0273 3.8769 4.3915 15 1 7.4102 6.2212 4.4555 16 6 2.7378 6.3375 1.7136 17 6 2.5458 7.4910 2.7305 18 6 2.2346 8.7205 1.8522 19 6 2.8249 8.4292 0.4613 20 6 3.4753 7.0326 0.5422 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.7066 2.1088 -0.7662 27 1 3.1897 1.1335 1.6957 28 1 2.8656 3.8047 0.1416 29 1 4.4424 3.2469 0.7507 30 1 3.5734 3.3251 3.0718 31 1 1.9967 3.8829 2.4627 32 1 6.1395 2.6342 2.9153 33 1 1.7740 5.9476 1.3862 34 1 3.4601 7.6518 3.3016 35 1 1.7107 7.2775 3.3975 36 1 2.7002 9.6100 2.2765 37 1 1.1566 8.8630 1.7779 38 1 2.0331 8.4295 -0.2879 39 1 3.5763 9.1779 0.2103 40 1 3.3181 6.4842 -0.3866 41 1 4.5402 7.1197 0.7573 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184567380.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:55 Heat of formation + Delta-G solvation = 13.511767 kcal Electronic energy + Delta-G solvation = -17387.339592 eV Core-core repulsion = 14881.274732 eV Total energy + Delta-G solvation = -2506.064860 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -37.79900 -35.84721 -34.47316 -31.66540 -30.75293 -27.95465 -27.78002 -26.28520 -24.07398 -22.18879 -20.42546 -19.56474 -19.40262 -18.82344 -16.23297 -15.59498 -14.81734 -14.38288 -14.08849 -14.00029 -13.43169 -12.96412 -12.78566 -12.58342 -12.19118 -11.97232 -11.65385 -11.32293 -11.14840 -10.89358 -10.72467 -10.69880 -10.54371 -10.46386 -10.38764 -10.24188 -10.01651 -9.89954 -9.77947 -9.49801 -9.24208 -8.25987 -8.16691 -6.76441 -5.73983 -2.99869 3.02635 3.42690 3.50527 3.51604 4.54708 5.21106 5.27480 5.31352 5.36589 5.39060 5.50775 5.60981 5.72949 5.85857 6.03792 6.11061 6.13417 6.15329 6.21536 6.25621 6.34988 6.38065 6.47162 6.51812 6.53198 6.55363 6.74129 6.80122 6.91361 7.01044 7.06489 7.17830 7.20971 7.39317 7.54879 7.78262 7.80420 8.09827 8.41906 9.29807 9.94862 10.39929 11.31205 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.015236 B = 0.008353 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.269859 B = 3351.296032 C = 4841.077559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.218 4.218 4 C -0.102 4.102 5 C -0.100 4.100 6 C 0.176 3.824 7 N -0.589 5.589 8 C -0.241 4.241 9 H 0.075 0.925 10 C -0.003 4.003 11 N -0.895 5.895 12 Si 0.890 3.110 13 H -0.290 1.290 14 H -0.295 1.295 15 H -0.283 1.283 16 C 0.175 3.825 17 C -0.136 4.136 18 C -0.121 4.121 19 C -0.122 4.122 20 C -0.137 4.137 21 H 0.053 0.947 22 H 0.050 0.950 23 H 0.047 0.953 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.025 0.975 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.003 0.997 32 H 0.251 0.749 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.528 0.629 -3.769 8.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 C -0.236 4.236 4 C -0.121 4.121 5 C -0.139 4.139 6 C 0.051 3.949 7 N -0.308 5.308 8 C -0.369 4.369 9 H 0.093 0.907 10 C -0.200 4.200 11 N -0.541 5.541 12 Si 0.720 3.280 13 H -0.218 1.218 14 H -0.221 1.221 15 H -0.209 1.209 16 C 0.066 3.934 17 C -0.176 4.176 18 C -0.159 4.159 19 C -0.161 4.161 20 C -0.176 4.176 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.043 0.957 29 H 0.127 0.873 30 H 0.109 0.891 31 H 0.021 0.979 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.420 0.481 -3.717 8.313 hybrid contribution 0.759 0.123 0.556 0.949 sum -6.661 0.604 -3.161 7.398 Atomic orbital electron populations 1.21711 0.96128 1.00663 1.01760 1.20515 0.95308 0.95332 1.01265 1.22594 1.02892 0.96594 1.01502 1.23170 0.94150 0.98577 0.96185 1.21447 1.03604 0.89898 0.98927 1.20799 0.92788 0.84652 0.96673 1.44218 1.16767 1.02085 1.67722 1.19153 0.92826 0.92637 1.32323 0.90700 1.24652 0.98171 0.96409 1.00773 1.70136 1.40100 1.03454 1.40384 0.86472 0.80673 0.77180 0.83658 1.21789 1.22136 1.20883 1.21237 0.92967 0.88268 0.90900 1.22771 1.01289 0.95126 0.98384 1.22062 0.99416 0.98434 0.96033 1.22071 0.99191 0.98187 0.96615 1.22840 1.01435 0.94018 0.99354 0.92753 0.93059 0.93392 0.92373 0.92210 0.88463 0.88283 0.95671 0.87346 0.89116 0.97884 0.93884 0.92588 0.90814 0.93086 0.92932 0.92982 0.93032 0.92978 0.93251 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.90 37.16 0.37 -1.40 16 2 C -0.09 -1.22 6.38 -27.88 -0.18 -1.40 16 3 C -0.22 -3.68 9.12 -36.03 -0.33 -4.01 16 4 C -0.10 -1.98 9.12 -36.03 -0.33 -2.30 16 5 C -0.10 -2.21 5.50 -27.89 -0.15 -2.36 16 6 C 0.18 4.14 4.83 -4.04 -0.02 4.12 16 7 N -0.59 -14.09 2.60 -163.35 -0.42 -14.52 16 8 C -0.24 -6.26 8.10 -15.06 -0.12 -6.39 16 9 H 0.08 1.95 6.75 -52.49 -0.35 1.60 16 10 C 0.00 -0.09 4.86 -17.43 -0.08 -0.17 16 11 N -0.89 -24.19 8.75 55.49 0.49 -23.71 16 12 Si 0.89 21.35 29.63 -169.99 -5.04 16.31 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 C 0.18 3.57 3.42 -65.89 -0.23 3.35 16 17 C -0.14 -2.52 6.35 -25.03 -0.16 -2.68 16 18 C -0.12 -1.87 6.80 -25.61 -0.17 -2.05 16 19 C -0.12 -1.92 6.80 -25.61 -0.17 -2.10 16 20 C -0.14 -2.61 6.39 -25.07 -0.16 -2.77 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.84 7.79 -51.93 -0.40 0.43 16 26 H 0.10 1.63 7.84 -52.49 -0.41 1.22 16 27 H 0.10 1.94 7.84 -52.49 -0.41 1.53 16 28 H 0.02 0.54 7.79 -51.93 -0.40 0.13 16 29 H 0.11 2.78 6.42 -51.93 -0.33 2.45 16 30 H 0.09 2.37 5.80 -51.93 -0.30 2.07 16 31 H 0.00 0.07 8.07 -51.93 -0.42 -0.35 16 32 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 33 H 0.06 1.11 7.94 -51.93 -0.41 0.70 16 34 H 0.07 1.50 6.50 -51.93 -0.34 1.16 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 1.57 7.22 -51.93 -0.37 1.19 16 LS Contribution 319.56 15.07 4.82 4.82 Total: -1.00 -25.99 319.56 -9.43 -35.42 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -7.53 Total: 1.83 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -1.74 Total: -20.16 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.06 Total: -38.22 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.04 Total: 16.31 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -25.99 -9.43 -35.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184567380.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.927 kcal (2) G-P(sol) polarization free energy of solvation -25.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds