Wall clock time and date at job start Sun Mar 29 2020 22:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50695 * 109.47081 * 2 1 4 4 C 1.31007 * 120.00001 * 125.00133 * 3 2 1 5 5 C 1.50695 * 120.00001 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47082 * 125.00158 * 5 4 3 7 7 N 1.46504 * 109.47161 * 179.97438 * 6 5 4 8 8 C 1.36936 * 120.00257 * 263.29520 * 7 6 5 9 9 H 1.07995 * 120.00202 * 187.71036 * 8 7 6 10 10 C 1.38816 * 119.99692 * 7.70345 * 8 7 6 11 11 N 1.31619 * 120.00000 * 26.65604 * 10 8 7 12 12 Si 1.86799 * 119.99964 * 206.64964 * 10 8 7 13 13 H 1.48499 * 109.46752 * 84.99110 * 12 10 8 14 14 H 1.48500 * 109.47101 * 204.98864 * 12 10 8 15 15 H 1.48499 * 109.47286 * 324.99297 * 12 10 8 16 16 C 1.46501 * 119.99779 * 83.29286 * 7 6 5 17 17 C 1.54966 * 110.92141 * 126.54246 * 16 7 6 18 18 C 1.54268 * 104.15885 * 156.29290 * 17 16 7 19 19 C 1.53879 * 106.64124 * 336.44542 * 18 17 16 20 20 C 1.54268 * 106.59672 * 359.97398 * 19 18 17 21 21 H 1.08997 * 109.46733 * 299.99504 * 1 2 3 22 22 H 1.08991 * 109.47000 * 59.99533 * 1 2 3 23 23 H 1.08998 * 109.46867 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47148 * 239.99908 * 2 1 3 25 25 H 1.09003 * 109.47194 * 120.00093 * 2 1 3 26 26 H 1.08002 * 120.00283 * 304.99908 * 3 2 1 27 27 H 1.08002 * 119.99716 * 359.97438 * 4 3 2 28 28 H 1.08997 * 109.47086 * 4.99941 * 5 4 3 29 29 H 1.09001 * 109.47132 * 245.00016 * 5 4 3 30 30 H 1.08997 * 109.47337 * 59.99936 * 6 5 4 31 31 H 1.09001 * 109.47021 * 299.99926 * 6 5 4 32 32 H 0.97001 * 120.00020 * 180.02562 * 11 10 8 33 33 H 1.09002 * 110.67664 * 3.23284 * 16 7 6 34 34 H 1.08995 * 110.47690 * 37.64394 * 17 16 7 35 35 H 1.08995 * 110.52844 * 274.96962 * 17 16 7 36 36 H 1.08999 * 110.03643 * 217.13416 * 18 17 16 37 37 H 1.08999 * 110.03166 * 95.75113 * 18 17 16 38 38 H 1.09007 * 110.03199 * 119.25962 * 19 18 17 39 39 H 1.09003 * 110.02860 * 240.63869 * 19 18 17 40 40 H 1.09001 * 110.48458 * 142.28825 * 20 19 18 41 41 H 1.08994 * 110.48476 * 264.79765 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8643 1.8214 0.9294 5 6 3.3670 3.2420 0.9290 6 6 3.0720 3.8878 2.2843 7 7 3.5613 5.2687 2.2842 8 6 4.7884 5.5603 2.8174 9 1 5.0970 6.5890 2.9313 10 6 5.6356 4.5338 3.2117 11 7 5.5478 3.3517 2.6396 12 14 6.9003 4.8301 4.5541 13 1 6.2685 4.6275 5.8827 14 1 8.0273 3.8769 4.3915 15 1 7.4102 6.2212 4.4555 16 6 2.7378 6.3375 1.7136 17 6 2.5458 7.4910 2.7305 18 6 2.2346 8.7205 1.8522 19 6 2.8249 8.4292 0.4613 20 6 3.4753 7.0326 0.5422 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.7066 2.1088 -0.7662 27 1 3.1897 1.1335 1.6957 28 1 2.8656 3.8047 0.1416 29 1 4.4424 3.2469 0.7507 30 1 3.5734 3.3251 3.0718 31 1 1.9967 3.8829 2.4627 32 1 6.1395 2.6342 2.9153 33 1 1.7740 5.9476 1.3862 34 1 3.4601 7.6518 3.3016 35 1 1.7107 7.2775 3.3975 36 1 2.7002 9.6100 2.2765 37 1 1.1566 8.8630 1.7779 38 1 2.0331 8.4295 -0.2879 39 1 3.5763 9.1779 0.2103 40 1 3.3181 6.4842 -0.3866 41 1 4.5402 7.1197 0.7573 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184567380.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:55 Heat of formation + Delta-G solvation = 3.000302 kcal Electronic energy + Delta-G solvation = -17387.795403 eV Core-core repulsion = 14881.274732 eV Total energy + Delta-G solvation = -2506.520671 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.40627 -37.33266 -36.06045 -33.28628 -32.48291 -29.41112 -29.26843 -27.98831 -25.75088 -23.65157 -22.04312 -21.13183 -20.89329 -20.30242 -18.12124 -17.33494 -16.37898 -15.83805 -15.65156 -15.45366 -15.02577 -14.51577 -14.20452 -14.02169 -13.81721 -13.51980 -13.08441 -12.99227 -12.65217 -12.61040 -12.39940 -12.25817 -11.99751 -11.91853 -11.82332 -11.78719 -11.76809 -11.45351 -11.33596 -11.13602 -10.98616 -10.22170 -9.70668 -8.66441 -7.75855 -5.02193 1.47527 1.51486 1.56115 1.56907 2.57821 3.31131 3.61332 3.99950 4.03128 4.06826 4.26023 4.31780 4.47193 4.57139 4.62413 4.70717 4.74211 4.83941 4.89629 4.91897 4.96218 5.01633 5.11593 5.17270 5.17713 5.22284 5.27195 5.30299 5.31769 5.41540 5.56253 5.60962 5.64313 5.68813 5.83675 5.89176 6.01965 6.32765 6.43288 7.28532 8.02656 8.42702 9.26715 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.015236 B = 0.008353 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.269859 B = 3351.296032 C = 4841.077559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 C -0.184 4.184 4 C -0.135 4.135 5 C -0.080 4.080 6 C 0.181 3.819 7 N -0.603 5.603 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.051 4.051 11 N -0.911 5.911 12 Si 0.943 3.057 13 H -0.293 1.293 14 H -0.301 1.301 15 H -0.278 1.278 16 C 0.164 3.836 17 C -0.133 4.133 18 C -0.113 4.113 19 C -0.114 4.114 20 C -0.133 4.133 21 H 0.046 0.954 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.025 0.975 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.013 0.987 32 H 0.244 0.756 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.045 0.955 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.327 1.231 -4.631 10.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.127 4.127 3 C -0.202 4.202 4 C -0.154 4.154 5 C -0.119 4.119 6 C 0.055 3.945 7 N -0.323 5.323 8 C -0.369 4.369 9 H 0.088 0.912 10 C -0.245 4.245 11 N -0.558 5.558 12 Si 0.774 3.226 13 H -0.221 1.221 14 H -0.228 1.228 15 H -0.204 1.204 16 C 0.056 3.944 17 C -0.172 4.172 18 C -0.151 4.151 19 C -0.152 4.152 20 C -0.173 4.173 21 H 0.065 0.935 22 H 0.077 0.923 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.077 0.923 26 H 0.121 0.879 27 H 0.109 0.891 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.031 0.969 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.234 1.108 -4.586 10.370 hybrid contribution 1.248 -0.082 0.761 1.464 sum -7.987 1.027 -3.824 8.915 Atomic orbital electron populations 1.21683 0.94265 1.02173 1.01815 1.20601 0.96860 0.93170 1.02076 1.22883 0.99875 0.98155 0.99316 1.22877 0.97100 0.97209 0.98183 1.21066 1.01129 0.91755 0.97935 1.20662 0.92709 0.84517 0.96596 1.44398 1.16500 1.03071 1.68307 1.19266 0.93490 0.92283 1.31877 0.91233 1.25222 1.00191 0.96695 1.02432 1.70300 1.40763 1.03733 1.40999 0.85625 0.78744 0.76886 0.81386 1.22113 1.22798 1.20368 1.21507 0.92804 0.88093 0.91952 1.22683 1.00378 0.95870 0.98266 1.22031 1.01091 0.97126 0.94864 1.22036 0.99886 0.95767 0.97559 1.22718 0.99651 0.96418 0.98470 0.93454 0.92267 0.91254 0.90644 0.92338 0.87902 0.89098 0.95617 0.91310 0.92096 0.96881 0.94674 0.91832 0.93266 0.92489 0.91632 0.90566 0.90786 0.91874 0.93605 0.93952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.90 71.98 0.71 -2.33 16 2 C -0.09 -2.32 6.38 29.85 0.19 -2.13 16 3 C -0.18 -5.98 9.12 25.64 0.23 -5.75 16 4 C -0.13 -5.29 9.12 25.64 0.23 -5.05 16 5 C -0.08 -3.62 5.50 29.85 0.16 -3.46 16 6 C 0.18 8.73 4.83 86.38 0.42 9.15 16 7 N -0.60 -29.49 2.60 -670.73 -1.74 -31.23 16 8 C -0.24 -12.81 8.10 84.03 0.68 -12.13 16 9 H 0.07 3.73 6.75 -2.91 -0.02 3.71 16 10 C -0.05 -2.77 4.86 84.86 0.41 -2.36 16 11 N -0.91 -51.28 8.75 21.65 0.19 -51.09 16 12 Si 0.94 45.12 29.63 68.60 2.03 47.16 16 13 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 14 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 15 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 16 C 0.16 6.62 3.42 46.31 0.16 6.78 16 17 C -0.13 -4.75 6.35 31.70 0.20 -4.55 16 18 C -0.11 -3.15 6.80 31.32 0.21 -2.94 16 19 C -0.11 -3.28 6.80 31.32 0.21 -3.07 16 20 C -0.13 -5.01 6.39 31.67 0.20 -4.81 16 21 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.06 1.54 7.79 -2.39 -0.02 1.52 16 26 H 0.10 3.25 7.84 -2.91 -0.02 3.22 16 27 H 0.09 3.69 7.84 -2.91 -0.02 3.67 16 28 H 0.03 1.12 7.79 -2.39 -0.02 1.10 16 29 H 0.07 3.69 6.42 -2.39 -0.02 3.68 16 30 H 0.06 3.32 5.80 -2.39 -0.01 3.30 16 31 H 0.01 0.59 8.07 -2.39 -0.02 0.57 16 32 H 0.24 13.59 8.31 -92.71 -0.77 12.82 16 33 H 0.06 2.45 7.94 -2.39 -0.02 2.43 16 34 H 0.05 1.99 6.50 -2.39 -0.02 1.98 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.04 1.84 7.22 -2.39 -0.02 1.82 16 Total: -1.00 -57.28 319.56 5.47 -51.82 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.95 Total: 15.98 kcal Atomic # 6 Polarization: -36.67 SS G_CDS: 4.03 Total: -32.64 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -1.55 Total: -82.32 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.16 kcal Total: -57.28 5.47 -51.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184567380.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.816 kcal (2) G-P(sol) polarization free energy of solvation -57.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds