Wall clock time and date at job start Sun Mar 29 2020 21:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00087 * 2 1 4 4 H 1.48498 * 109.47278 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46822 * 299.99956 * 3 2 1 6 6 H 1.48495 * 109.46898 * 59.99728 * 3 2 1 7 7 C 1.37883 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99863 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00017 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47163 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47341 * 180.02562 * 10 9 7 12 12 N 1.46894 * 109.47325 * 179.97438 * 11 10 9 13 13 C 1.46903 * 111.00258 * 180.02562 * 12 11 10 14 14 H 1.09002 * 112.87444 * 23.68412 * 13 12 11 15 15 C 1.53929 * 113.64659 * 252.26395 * 13 12 11 16 16 C 1.53920 * 87.21991 * 220.64610 * 15 13 12 17 17 C 1.53011 * 113.65590 * 155.00091 * 13 12 11 18 18 C 1.53564 * 115.13152 * 256.32971 * 17 13 12 19 19 C 1.55067 * 103.98009 * 153.13690 * 18 17 13 20 20 C 1.54951 * 102.85529 * 322.68558 * 19 18 17 21 21 C 1.53169 * 115.36730 * 22.33282 * 17 13 12 22 22 H 0.96996 * 120.00439 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.46911 * 59.99920 * 9 7 2 24 24 H 1.09004 * 109.47320 * 300.00263 * 9 7 2 25 25 H 1.08995 * 109.47417 * 59.99410 * 10 9 7 26 26 H 1.09004 * 109.46798 * 300.00070 * 10 9 7 27 27 H 1.09006 * 109.47009 * 59.99339 * 11 10 9 28 28 H 1.09004 * 109.47082 * 299.99713 * 11 10 9 29 29 H 1.00904 * 111.00501 * 303.95185 * 12 11 10 30 30 H 1.08996 * 113.58901 * 335.22656 * 15 13 12 31 31 H 1.08992 * 113.59169 * 105.98279 * 15 13 12 32 32 H 1.09005 * 113.64955 * 270.36861 * 16 15 13 33 33 H 1.09001 * 113.65440 * 139.34876 * 16 15 13 34 34 H 1.08996 * 110.52945 * 34.50912 * 18 17 13 35 35 H 1.09005 * 110.52438 * 271.75305 * 18 17 13 36 36 H 1.09004 * 110.73491 * 81.03195 * 19 18 17 37 37 H 1.08997 * 110.72973 * 204.34059 * 19 18 17 38 38 H 1.09003 * 110.48023 * 156.24945 * 20 19 18 39 39 H 1.09002 * 110.48254 * 278.87501 * 20 19 18 40 40 H 1.09003 * 110.09620 * 111.13897 * 21 17 13 41 41 H 1.09004 * 110.14708 * 349.56889 * 21 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4350 -6.1036 -0.0018 13 6 1.7347 -7.3950 -0.0030 14 1 0.7244 -7.3287 -0.4067 15 6 1.8176 -8.1436 1.3394 16 6 2.0177 -9.4327 0.5226 17 6 2.5589 -8.5397 -0.5960 18 6 2.1601 -8.9622 -2.0175 19 6 3.4650 -9.5512 -2.6132 20 6 4.5605 -8.6259 -2.0259 21 6 4.0758 -8.3279 -0.5899 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5572 0.8897 25 1 2.8720 -3.6043 0.8893 26 1 2.8720 -3.6043 -0.8906 27 1 0.8539 -5.0445 -0.8914 28 1 0.8534 -5.0451 0.8886 29 1 3.0698 -6.0362 -0.7832 30 1 2.6850 -7.8684 1.9394 31 1 0.8874 -8.1254 1.9072 32 1 1.0859 -9.9375 0.2670 33 1 2.7639 -10.1062 0.9442 34 1 1.8323 -8.0980 -2.5953 35 1 1.3782 -9.7209 -1.9856 36 1 3.6104 -10.5797 -2.2824 37 1 3.4531 -9.4928 -3.7015 38 1 5.5221 -9.1388 -2.0052 39 1 4.6312 -7.7043 -2.6036 40 1 4.5469 -9.0138 0.1142 41 1 4.3099 -7.2975 -0.3220 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189110610.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:00 Heat of formation + Delta-G solvation = -11.349776 kcal Electronic energy + Delta-G solvation = -16939.521490 eV Core-core repulsion = 14432.378552 eV Total energy + Delta-G solvation = -2507.142937 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.42729 -35.88199 -34.63283 -32.92244 -30.61294 -28.86572 -26.92864 -26.34249 -23.89533 -22.17702 -21.62791 -20.66497 -20.14389 -17.93558 -16.39347 -15.94126 -15.62076 -15.36940 -14.61811 -14.36940 -13.95741 -13.49727 -13.23111 -12.79681 -12.53700 -12.19817 -11.95547 -11.67076 -11.44018 -11.22562 -11.10054 -11.07416 -10.85214 -10.73104 -10.57552 -10.51761 -10.43413 -10.07075 -9.97817 -9.64911 -9.26190 -8.98510 -8.31549 -8.08391 -5.96510 -3.98363 3.33400 3.40627 3.45354 4.27542 4.40111 4.47289 4.49218 4.68144 4.87647 4.96376 5.09232 5.16548 5.37803 5.39346 5.49729 5.55012 5.60712 5.67131 5.75673 5.76426 5.84011 5.84285 5.95469 6.01359 6.05641 6.09380 6.23668 6.28609 6.37789 6.41991 6.44746 6.77904 6.86174 7.18613 7.47597 7.70050 7.73196 7.88244 8.04400 8.47936 9.09210 9.65514 11.15043 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.039935 B = 0.004100 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.973912 B = 6828.279921 C = 7119.730185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.107 4.107 11 C 0.058 3.942 12 N -0.677 5.677 13 C 0.069 3.931 14 H 0.069 0.931 15 C -0.126 4.126 16 C -0.130 4.130 17 C -0.085 4.085 18 C -0.115 4.115 19 C -0.123 4.123 20 C -0.126 4.126 21 C -0.105 4.105 22 H 0.259 0.741 23 H 0.013 0.987 24 H 0.016 0.984 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.022 0.978 28 H 0.066 0.934 29 H 0.337 0.663 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.427 -20.371 -2.493 21.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.070 4.070 12 N -0.309 5.309 13 C -0.042 4.042 14 H 0.087 0.913 15 C -0.164 4.164 16 C -0.168 4.168 17 C -0.085 4.085 18 C -0.152 4.152 19 C -0.161 4.161 20 C -0.164 4.164 21 C -0.143 4.143 22 H 0.069 0.931 23 H 0.031 0.969 24 H 0.034 0.966 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.041 0.959 28 H 0.084 0.916 29 H 0.157 0.843 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.366 -20.226 -1.814 21.004 hybrid contribution -0.056 0.957 -0.923 1.330 sum 5.311 -19.269 -2.737 20.174 Atomic orbital electron populations 1.69977 1.06068 1.26407 1.51210 1.25035 0.94837 0.99257 0.95426 0.86545 0.80156 0.83837 0.77532 1.19722 1.21073 1.21020 1.21307 0.93088 0.91070 1.50093 0.92634 1.19071 0.94046 0.91435 0.97075 1.21616 0.99146 0.93110 1.00594 1.22168 0.94207 0.90959 0.99701 1.60801 1.19886 1.01017 1.49162 1.22941 0.96169 0.88395 0.96651 0.91324 1.23026 1.02093 0.94737 0.96564 1.22859 1.00712 0.96333 0.96912 1.22215 0.95765 0.96478 0.94085 1.22334 0.97360 1.00249 0.95287 1.22499 0.95066 0.98941 0.99589 1.22431 0.98079 0.99497 0.96361 1.21904 0.92771 1.03110 0.96487 0.93124 0.96859 0.96605 0.92609 0.93793 0.95948 0.91595 0.84269 0.89450 0.92095 0.90514 0.91446 0.91642 0.91765 0.91777 0.91974 0.91934 0.91629 0.91796 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.11 -2.27 5.41 -26.74 -0.14 -2.42 16 11 C 0.06 1.04 5.53 -3.83 -0.02 1.02 16 12 N -0.68 -10.12 5.72 -106.21 -0.61 -10.73 16 13 C 0.07 0.88 3.67 -67.22 -0.25 0.64 16 14 H 0.07 0.93 7.86 -51.93 -0.41 0.52 16 15 C -0.13 -1.48 7.72 -25.77 -0.20 -1.68 16 16 C -0.13 -1.29 7.28 -26.24 -0.19 -1.48 16 17 C -0.08 -0.90 1.03 -154.11 -0.16 -1.06 16 18 C -0.11 -1.13 6.20 -25.35 -0.16 -1.29 16 19 C -0.12 -1.09 6.91 -24.61 -0.17 -1.26 16 20 C -0.13 -1.17 6.84 -24.93 -0.17 -1.34 16 21 C -0.11 -1.09 5.82 -25.87 -0.15 -1.24 16 22 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.02 0.40 8.13 -51.93 -0.42 -0.02 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.34 4.83 7.06 -39.29 -0.28 4.55 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.71 7.94 -51.93 -0.41 0.29 16 33 H 0.07 0.62 7.86 -51.93 -0.41 0.21 16 34 H 0.06 0.70 8.11 -51.93 -0.42 0.28 16 35 H 0.06 0.59 7.81 -51.93 -0.41 0.18 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.63 7.73 -51.93 -0.40 0.23 16 41 H 0.08 0.99 5.92 -51.93 -0.31 0.69 16 LS Contribution 319.86 15.07 4.82 4.82 Total: -1.00 -29.78 319.86 -9.89 -39.67 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -7.66 Total: -0.53 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -2.16 Total: -23.50 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.13 Total: -37.46 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.78 -9.89 -39.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189110610.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.319 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds