Wall clock time and date at job start Sun Mar 29 2020 21:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00087 * 2 1 4 4 H 1.48498 * 109.47278 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46822 * 299.99956 * 3 2 1 6 6 H 1.48495 * 109.46898 * 59.99728 * 3 2 1 7 7 C 1.37883 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99863 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00017 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47163 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47341 * 180.02562 * 10 9 7 12 12 N 1.46894 * 109.47325 * 179.97438 * 11 10 9 13 13 C 1.46903 * 111.00258 * 180.02562 * 12 11 10 14 14 H 1.09002 * 112.87444 * 23.68412 * 13 12 11 15 15 C 1.53929 * 113.64659 * 252.26395 * 13 12 11 16 16 C 1.53920 * 87.21991 * 220.64610 * 15 13 12 17 17 C 1.53011 * 113.65590 * 155.00091 * 13 12 11 18 18 C 1.53564 * 115.13152 * 256.32971 * 17 13 12 19 19 C 1.55067 * 103.98009 * 153.13690 * 18 17 13 20 20 C 1.54951 * 102.85529 * 322.68558 * 19 18 17 21 21 C 1.53169 * 115.36730 * 22.33282 * 17 13 12 22 22 H 0.96996 * 120.00439 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.46911 * 59.99920 * 9 7 2 24 24 H 1.09004 * 109.47320 * 300.00263 * 9 7 2 25 25 H 1.08995 * 109.47417 * 59.99410 * 10 9 7 26 26 H 1.09004 * 109.46798 * 300.00070 * 10 9 7 27 27 H 1.09006 * 109.47009 * 59.99339 * 11 10 9 28 28 H 1.09004 * 109.47082 * 299.99713 * 11 10 9 29 29 H 1.00904 * 111.00501 * 303.95185 * 12 11 10 30 30 H 1.08996 * 113.58901 * 335.22656 * 15 13 12 31 31 H 1.08992 * 113.59169 * 105.98279 * 15 13 12 32 32 H 1.09005 * 113.64955 * 270.36861 * 16 15 13 33 33 H 1.09001 * 113.65440 * 139.34876 * 16 15 13 34 34 H 1.08996 * 110.52945 * 34.50912 * 18 17 13 35 35 H 1.09005 * 110.52438 * 271.75305 * 18 17 13 36 36 H 1.09004 * 110.73491 * 81.03195 * 19 18 17 37 37 H 1.08997 * 110.72973 * 204.34059 * 19 18 17 38 38 H 1.09003 * 110.48023 * 156.24945 * 20 19 18 39 39 H 1.09002 * 110.48254 * 278.87501 * 20 19 18 40 40 H 1.09003 * 110.09620 * 111.13897 * 21 17 13 41 41 H 1.09004 * 110.14708 * 349.56889 * 21 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4350 -6.1036 -0.0018 13 6 1.7347 -7.3950 -0.0030 14 1 0.7244 -7.3287 -0.4067 15 6 1.8176 -8.1436 1.3394 16 6 2.0177 -9.4327 0.5226 17 6 2.5589 -8.5397 -0.5960 18 6 2.1601 -8.9622 -2.0175 19 6 3.4650 -9.5512 -2.6132 20 6 4.5605 -8.6259 -2.0259 21 6 4.0758 -8.3279 -0.5899 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5572 0.8897 25 1 2.8720 -3.6043 0.8893 26 1 2.8720 -3.6043 -0.8906 27 1 0.8539 -5.0445 -0.8914 28 1 0.8534 -5.0451 0.8886 29 1 3.0698 -6.0362 -0.7832 30 1 2.6850 -7.8684 1.9394 31 1 0.8874 -8.1254 1.9072 32 1 1.0859 -9.9375 0.2670 33 1 2.7639 -10.1062 0.9442 34 1 1.8323 -8.0980 -2.5953 35 1 1.3782 -9.7209 -1.9856 36 1 3.6104 -10.5797 -2.2824 37 1 3.4531 -9.4928 -3.7015 38 1 5.5221 -9.1388 -2.0052 39 1 4.6312 -7.7043 -2.6036 40 1 4.5469 -9.0138 0.1142 41 1 4.3099 -7.2975 -0.3220 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189110610.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:00 Heat of formation + Delta-G solvation = -27.474360 kcal Electronic energy + Delta-G solvation = -16940.220704 eV Core-core repulsion = 14432.378552 eV Total energy + Delta-G solvation = -2507.842152 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.33021 -37.21713 -35.87471 -34.78279 -32.41290 -29.65757 -28.25425 -27.66282 -25.33001 -23.70055 -22.52601 -21.98356 -21.41325 -18.88207 -18.48938 -17.14625 -16.69340 -16.47580 -16.24545 -15.83922 -15.22727 -14.55660 -14.39979 -14.05466 -13.80429 -13.76744 -13.37525 -13.16526 -12.77106 -12.57455 -12.47105 -12.39498 -12.03815 -11.90445 -11.83009 -11.66602 -11.52049 -11.37726 -11.29626 -11.21654 -10.86629 -10.76949 -10.56929 -9.32883 -8.21000 -6.32306 1.39631 1.40103 1.53886 2.40621 3.12066 3.23880 3.51402 3.64700 3.69611 4.01344 4.06140 4.21668 4.30062 4.35703 4.42532 4.58358 4.61095 4.70983 4.72852 4.80236 4.89781 4.95877 4.98598 5.02704 5.09677 5.12624 5.13636 5.23431 5.24447 5.29385 5.42170 5.49910 5.50622 5.54006 5.60071 5.73583 5.84528 6.15738 6.28174 6.49051 6.84700 7.37116 8.91303 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.039935 B = 0.004100 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.973912 B = 6828.279921 C = 7119.730185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.025 3.975 10 C -0.091 4.091 11 C 0.072 3.928 12 N -0.674 5.674 13 C 0.057 3.943 14 H 0.062 0.938 15 C -0.128 4.128 16 C -0.118 4.118 17 C -0.079 4.079 18 C -0.116 4.116 19 C -0.119 4.119 20 C -0.125 4.125 21 C -0.105 4.105 22 H 0.264 0.736 23 H -0.010 1.010 24 H -0.010 1.010 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.018 0.982 28 H 0.057 0.943 29 H 0.342 0.658 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.755 -21.334 -2.787 22.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.129 4.129 11 C -0.057 4.057 12 N -0.306 5.306 13 C -0.053 4.053 14 H 0.079 0.921 15 C -0.166 4.166 16 C -0.156 4.156 17 C -0.079 4.079 18 C -0.153 4.153 19 C -0.156 4.156 20 C -0.163 4.163 21 C -0.143 4.143 22 H 0.073 0.927 23 H 0.008 0.992 24 H 0.009 0.991 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.037 0.963 28 H 0.076 0.924 29 H 0.162 0.838 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.704 -21.210 -2.110 22.345 hybrid contribution -0.504 1.238 -0.820 1.569 sum 6.200 -19.972 -2.930 21.117 Atomic orbital electron populations 1.70106 1.07858 1.27743 1.51800 1.26012 0.95791 1.03463 0.94660 0.85366 0.79057 0.78582 0.77850 1.18569 1.20241 1.20275 1.21726 0.93542 0.92375 1.50423 0.92231 1.18976 0.94432 0.93228 0.94650 1.21365 0.97975 0.92956 1.00616 1.21857 0.94092 0.90576 0.99150 1.60761 1.19288 1.01061 1.49465 1.23101 0.96181 0.87858 0.98191 0.92052 1.23022 1.01750 0.95811 0.96046 1.22822 1.01517 0.95580 0.95640 1.22191 0.95656 0.95238 0.94853 1.22341 0.98313 1.00125 0.94567 1.22490 0.93966 0.99241 0.99926 1.22431 0.98879 0.99523 0.95467 1.21898 0.92597 1.02339 0.97465 0.92747 0.99187 0.99145 0.92911 0.93221 0.96328 0.92426 0.83806 0.90206 0.92191 0.89430 0.90134 0.92892 0.90821 0.90678 0.91369 0.90738 0.92316 0.91018 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.12 13.29 21.45 0.28 -57.84 16 2 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 3 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.54 -31.90 9.11 25.60 0.23 -31.67 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.36 4.97 29.85 0.15 1.51 16 10 C -0.09 -3.94 5.41 30.59 0.17 -3.78 16 11 C 0.07 2.64 5.53 86.30 0.48 3.12 16 12 N -0.67 -20.00 5.72 -489.93 -2.80 -22.80 16 13 C 0.06 1.42 3.67 45.23 0.17 1.58 16 14 H 0.06 1.64 7.86 -2.39 -0.02 1.62 16 15 C -0.13 -2.88 7.72 31.22 0.24 -2.64 16 16 C -0.12 -2.07 7.28 30.91 0.22 -1.85 16 17 C -0.08 -1.54 1.03 -51.93 -0.05 -1.60 16 18 C -0.12 -2.08 6.20 31.49 0.20 -1.89 16 19 C -0.12 -1.82 6.91 31.97 0.22 -1.60 16 20 C -0.13 -2.09 6.84 31.76 0.22 -1.87 16 21 C -0.11 -2.01 5.82 31.15 0.18 -1.83 16 22 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 23 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 24 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 25 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 27 H 0.02 0.69 8.13 -2.38 -0.02 0.67 16 28 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 29 H 0.34 9.65 7.06 -89.69 -0.63 9.01 16 30 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 1.38 7.94 -2.38 -0.02 1.36 16 33 H 0.08 1.24 7.86 -2.39 -0.02 1.22 16 34 H 0.05 1.08 8.11 -2.39 -0.02 1.07 16 35 H 0.07 1.18 7.81 -2.38 -0.02 1.16 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.26 7.73 -2.39 -0.02 1.24 16 41 H 0.07 1.55 5.92 -2.38 -0.01 1.54 16 Total: -1.00 -63.67 319.86 2.72 -60.94 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.33 Total: 14.69 kcal Atomic # 6 Polarization: -45.02 SS G_CDS: 2.88 Total: -42.14 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -2.52 Total: -80.63 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -63.67 2.72 -60.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189110610.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.469 kcal (2) G-P(sol) polarization free energy of solvation -63.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds