Wall clock time and date at job start Sun Mar 29 2020 21:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00274 * 2 1 4 4 H 1.48497 * 109.47107 * 85.78240 * 3 2 1 5 5 H 1.48498 * 109.47099 * 325.78717 * 3 2 1 6 6 H 1.48492 * 109.47371 * 205.78380 * 3 2 1 7 7 C 1.38813 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00014 * 157.44778 * 7 2 1 9 9 N 1.36933 * 120.00146 * 337.44678 * 7 2 1 10 10 C 1.50215 * 120.54238 * 341.62685 * 9 7 2 11 11 C 1.46286 * 107.44806 * 109.75868 * 10 9 7 12 12 C 1.52378 * 114.24274 * 58.39701 * 11 10 9 13 13 C 1.50257 * 105.51017 * 270.27088 * 12 11 10 14 14 C 1.53213 * 110.58957 * 337.98474 * 13 12 11 15 15 C 1.52958 * 109.46390 * 298.85470 * 14 13 12 16 16 C 1.52982 * 109.55723 * 299.83071 * 15 14 13 17 17 C 1.52992 * 109.47464 * 59.72803 * 16 15 14 18 18 C 1.52970 * 109.46945 * 300.14594 * 17 16 15 19 19 C 1.54897 * 110.53830 * 97.76777 * 13 12 11 20 20 C 1.43426 * 120.54355 * 161.35174 * 9 7 2 21 21 H 0.97004 * 119.99981 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.86702 * 229.24595 * 10 9 7 23 23 H 1.09003 * 109.86392 * 350.20594 * 10 9 7 24 24 H 1.08996 * 108.52795 * 179.63017 * 11 10 9 25 25 H 1.08997 * 108.52969 * 297.32183 * 11 10 9 26 26 H 1.08999 * 110.23263 * 29.26957 * 12 11 10 27 27 H 1.09002 * 110.22968 * 151.27680 * 12 11 10 28 28 H 1.09002 * 109.46764 * 58.85660 * 14 13 12 29 29 H 1.09004 * 109.47076 * 178.85343 * 14 13 12 30 30 H 1.09004 * 109.45287 * 179.80547 * 15 14 13 31 31 H 1.09002 * 109.45584 * 59.86221 * 15 14 13 32 32 H 1.09001 * 109.47550 * 299.72717 * 16 15 14 33 33 H 1.09002 * 109.47374 * 179.72915 * 16 15 14 34 34 H 1.08999 * 109.47408 * 180.14758 * 17 16 15 35 35 H 1.09001 * 109.47475 * 60.14246 * 17 16 15 36 36 H 1.08996 * 109.48805 * 300.44099 * 18 17 16 37 37 H 1.09002 * 109.49811 * 180.40161 * 18 17 16 38 38 H 1.08991 * 109.35695 * 81.49495 * 19 13 12 39 39 H 1.08999 * 109.34890 * 201.20715 * 19 13 12 40 40 H 1.08999 * 108.13066 * 33.29182 * 20 9 7 41 41 H 1.08996 * 108.13601 * 149.79010 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4086 2.0978 1.3963 5 1 1.4951 2.6252 -0.7872 6 1 3.5894 1.4160 -0.6090 7 6 2.0102 -1.2022 0.0005 8 1 3.0283 -1.2382 -0.3582 9 7 1.4040 -2.3425 0.4559 10 6 0.1789 -2.2623 1.3215 11 6 -0.9531 -2.7345 0.5242 12 6 -0.7973 -4.1555 -0.0035 13 6 -0.1206 -4.0166 -1.3378 14 6 -0.3328 -2.6095 -1.9057 15 6 -1.8286 -2.3612 -2.1067 16 6 -2.3918 -3.3921 -3.0867 17 6 -2.1745 -4.7995 -2.5274 18 6 -0.6774 -5.0440 -2.3298 19 6 1.4034 -4.2583 -1.2021 20 6 1.9250 -3.6331 0.1093 21 1 -0.4850 0.8401 -0.0004 22 1 0.3036 -2.8962 2.1995 23 1 0.0108 -1.2307 1.6306 24 1 -1.8521 -2.6899 1.1388 25 1 -1.0820 -2.0640 -0.3254 26 1 -0.1779 -4.7433 0.6739 27 1 -1.7749 -4.6223 -0.1234 28 1 0.0677 -1.8726 -1.2095 29 1 0.1818 -2.5225 -2.8627 30 1 -1.9796 -1.3589 -2.5074 31 1 -2.3433 -2.4508 -1.1499 32 1 -1.8810 -3.2992 -4.0452 33 1 -3.4587 -3.2169 -3.2252 34 1 -2.5733 -5.5341 -3.2270 35 1 -2.6874 -4.8933 -1.5702 36 1 -0.1631 -4.9426 -3.2854 37 1 -0.5216 -6.0492 -1.9380 38 1 1.6000 -5.3303 -1.1963 39 1 1.9182 -3.8012 -2.0471 40 1 3.0092 -3.5517 0.0323 41 1 1.6991 -4.3202 0.9247 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190317769.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:18 Heat of formation + Delta-G solvation = 36.484906 kcal Electronic energy + Delta-G solvation = -19285.264339 eV Core-core repulsion = 16780.195669 eV Total energy + Delta-G solvation = -2505.068670 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.05867 -35.88339 -32.79462 -31.89606 -30.73880 -29.86124 -26.96410 -25.42185 -23.62088 -22.33345 -21.76006 -19.53016 -19.44569 -17.30398 -16.58978 -15.22019 -14.97279 -14.18153 -13.96098 -13.45118 -13.39480 -13.23816 -12.77886 -12.37856 -12.08956 -11.78416 -11.37983 -11.14486 -11.04933 -10.79129 -10.70497 -10.69236 -10.52342 -10.22768 -10.02669 -9.87994 -9.57046 -9.48518 -9.37633 -9.05824 -8.94836 -8.39016 -8.19525 -6.70943 -5.78349 -3.11911 3.40548 3.48938 3.49529 4.53820 5.28035 5.34716 5.37087 5.40438 5.50755 5.84125 5.87824 5.90460 6.02711 6.14264 6.19045 6.22835 6.31709 6.40568 6.45504 6.48748 6.54383 6.59178 6.66809 6.73926 6.76649 6.80221 6.95356 6.98877 7.08574 7.09434 7.19836 7.33950 7.45901 7.48325 7.74420 7.78810 8.10353 8.21233 8.44568 9.23421 9.89972 10.41920 11.27413 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.029917 B = 0.010240 C = 0.009159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.694261 B = 2733.618452 C = 3056.475990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.004 4.004 3 Si 0.898 3.102 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.588 5.588 10 C 0.161 3.839 11 C -0.178 4.178 12 C -0.103 4.103 13 C -0.038 4.038 14 C -0.140 4.140 15 C -0.120 4.120 16 C -0.118 4.118 17 C -0.117 4.117 18 C -0.111 4.111 19 C -0.138 4.138 20 C 0.158 3.842 21 H 0.254 0.746 22 H 0.000 1.000 23 H 0.096 0.904 24 H 0.018 0.982 25 H 0.148 0.852 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.169 0.831 29 H 0.028 0.972 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.042 0.958 39 H 0.048 0.952 40 H 0.028 0.972 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.279 -7.174 -2.494 8.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.201 4.201 3 Si 0.728 3.272 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.207 1.207 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.309 5.309 10 C 0.037 3.963 11 C -0.216 4.216 12 C -0.141 4.141 13 C -0.039 4.039 14 C -0.177 4.177 15 C -0.157 4.157 16 C -0.156 4.156 17 C -0.155 4.155 18 C -0.149 4.149 19 C -0.179 4.179 20 C 0.029 3.971 21 H 0.065 0.935 22 H 0.018 0.982 23 H 0.114 0.886 24 H 0.037 0.963 25 H 0.165 0.835 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.186 0.814 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.046 0.954 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -3.353 -7.015 -2.483 8.162 hybrid contribution 0.338 0.646 -0.272 0.778 sum -3.015 -6.369 -2.755 7.566 Atomic orbital electron populations 1.69882 1.04892 1.25354 1.54539 1.24739 0.95261 0.97984 1.02088 0.86323 0.79243 0.84129 0.77456 1.21772 1.22025 1.20730 1.19288 0.95166 0.85903 1.36763 0.91291 1.44360 1.31543 1.00365 1.54629 1.20327 0.84974 1.01174 0.89786 1.21814 0.97767 0.97118 1.04877 1.21059 0.98405 0.98400 0.96192 1.20320 0.94198 0.95229 0.94108 1.22493 0.94290 0.99016 1.01859 1.21768 0.98057 0.97111 0.98809 1.21573 0.99289 0.95636 0.99102 1.21550 0.97029 0.96527 1.00359 1.21770 0.95216 0.98469 0.99396 1.22985 0.95663 0.98085 1.01195 1.20253 0.95872 0.87731 0.93212 0.93539 0.98188 0.88565 0.96282 0.83516 0.93213 0.93393 0.81396 0.95290 0.93069 0.91120 0.93094 0.93476 0.93541 0.91978 0.93054 0.93375 0.93963 0.93282 0.95368 0.95511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.55 8.37 55.49 0.46 -23.09 16 2 C 0.00 -0.09 4.71 -17.43 -0.08 -0.18 16 3 Si 0.90 21.12 29.61 -169.99 -5.03 16.09 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.24 -6.31 8.67 -15.06 -0.13 -6.44 16 8 H 0.07 1.82 7.90 -52.48 -0.41 1.40 16 9 N -0.59 -14.12 1.78 -175.37 -0.31 -14.43 16 10 C 0.16 3.76 5.23 -5.16 -0.03 3.73 16 11 C -0.18 -3.83 3.66 -30.24 -0.11 -3.94 16 12 C -0.10 -1.97 4.64 -28.42 -0.13 -2.10 16 13 C -0.04 -0.73 0.46 -154.62 -0.07 -0.80 16 14 C -0.14 -2.97 3.87 -26.64 -0.10 -3.08 16 15 C -0.12 -2.31 4.98 -26.76 -0.13 -2.44 16 16 C -0.12 -1.92 5.93 -26.74 -0.16 -2.07 16 17 C -0.12 -1.79 5.70 -26.75 -0.15 -1.95 16 18 C -0.11 -1.82 4.52 -26.60 -0.12 -1.95 16 19 C -0.14 -2.68 5.18 -25.02 -0.13 -2.81 16 20 C 0.16 3.36 5.11 -4.95 -0.03 3.33 16 21 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 22 H 0.00 0.00 8.13 -51.93 -0.42 -0.42 16 23 H 0.10 2.49 5.75 -51.93 -0.30 2.19 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.15 3.32 1.59 -51.93 -0.08 3.24 16 26 H 0.05 0.95 6.24 -51.93 -0.32 0.62 16 27 H 0.05 0.85 5.73 -51.93 -0.30 0.55 16 28 H 0.17 4.05 1.81 -51.93 -0.09 3.96 16 29 H 0.03 0.63 8.04 -51.93 -0.42 0.21 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.40 5.56 -51.93 -0.29 1.11 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.96 6.14 -51.93 -0.32 0.64 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.74 8.13 -51.93 -0.42 0.31 16 38 H 0.04 0.73 7.94 -51.93 -0.41 0.31 16 39 H 0.05 0.99 7.85 -51.93 -0.41 0.58 16 40 H 0.03 0.59 7.98 -51.93 -0.41 0.18 16 41 H 0.03 0.54 6.87 -51.93 -0.36 0.18 16 LS Contribution 276.57 15.07 4.17 4.17 Total: -1.00 -25.43 276.57 -8.73 -34.16 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.64 Total: 3.79 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -1.38 Total: -20.69 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.15 Total: -37.52 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -25.43 -8.73 -34.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190317769.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.648 kcal (2) G-P(sol) polarization free energy of solvation -25.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds