Wall clock time and date at job start Sun Mar 29 2020 21:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00274 * 2 1 4 4 H 1.48497 * 109.47107 * 85.78240 * 3 2 1 5 5 H 1.48498 * 109.47099 * 325.78717 * 3 2 1 6 6 H 1.48492 * 109.47371 * 205.78380 * 3 2 1 7 7 C 1.38813 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00014 * 157.44778 * 7 2 1 9 9 N 1.36933 * 120.00146 * 337.44678 * 7 2 1 10 10 C 1.50215 * 120.54238 * 341.62685 * 9 7 2 11 11 C 1.46286 * 107.44806 * 109.75868 * 10 9 7 12 12 C 1.52378 * 114.24274 * 58.39701 * 11 10 9 13 13 C 1.50257 * 105.51017 * 270.27088 * 12 11 10 14 14 C 1.53213 * 110.58957 * 337.98474 * 13 12 11 15 15 C 1.52958 * 109.46390 * 298.85470 * 14 13 12 16 16 C 1.52982 * 109.55723 * 299.83071 * 15 14 13 17 17 C 1.52992 * 109.47464 * 59.72803 * 16 15 14 18 18 C 1.52970 * 109.46945 * 300.14594 * 17 16 15 19 19 C 1.54897 * 110.53830 * 97.76777 * 13 12 11 20 20 C 1.43426 * 120.54355 * 161.35174 * 9 7 2 21 21 H 0.97004 * 119.99981 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.86702 * 229.24595 * 10 9 7 23 23 H 1.09003 * 109.86392 * 350.20594 * 10 9 7 24 24 H 1.08996 * 108.52795 * 179.63017 * 11 10 9 25 25 H 1.08997 * 108.52969 * 297.32183 * 11 10 9 26 26 H 1.08999 * 110.23263 * 29.26957 * 12 11 10 27 27 H 1.09002 * 110.22968 * 151.27680 * 12 11 10 28 28 H 1.09002 * 109.46764 * 58.85660 * 14 13 12 29 29 H 1.09004 * 109.47076 * 178.85343 * 14 13 12 30 30 H 1.09004 * 109.45287 * 179.80547 * 15 14 13 31 31 H 1.09002 * 109.45584 * 59.86221 * 15 14 13 32 32 H 1.09001 * 109.47550 * 299.72717 * 16 15 14 33 33 H 1.09002 * 109.47374 * 179.72915 * 16 15 14 34 34 H 1.08999 * 109.47408 * 180.14758 * 17 16 15 35 35 H 1.09001 * 109.47475 * 60.14246 * 17 16 15 36 36 H 1.08996 * 109.48805 * 300.44099 * 18 17 16 37 37 H 1.09002 * 109.49811 * 180.40161 * 18 17 16 38 38 H 1.08991 * 109.35695 * 81.49495 * 19 13 12 39 39 H 1.08999 * 109.34890 * 201.20715 * 19 13 12 40 40 H 1.08999 * 108.13066 * 33.29182 * 20 9 7 41 41 H 1.08996 * 108.13601 * 149.79010 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4086 2.0978 1.3963 5 1 1.4951 2.6252 -0.7872 6 1 3.5894 1.4160 -0.6090 7 6 2.0102 -1.2022 0.0005 8 1 3.0283 -1.2382 -0.3582 9 7 1.4040 -2.3425 0.4559 10 6 0.1789 -2.2623 1.3215 11 6 -0.9531 -2.7345 0.5242 12 6 -0.7973 -4.1555 -0.0035 13 6 -0.1206 -4.0166 -1.3378 14 6 -0.3328 -2.6095 -1.9057 15 6 -1.8286 -2.3612 -2.1067 16 6 -2.3918 -3.3921 -3.0867 17 6 -2.1745 -4.7995 -2.5274 18 6 -0.6774 -5.0440 -2.3298 19 6 1.4034 -4.2583 -1.2021 20 6 1.9250 -3.6331 0.1093 21 1 -0.4850 0.8401 -0.0004 22 1 0.3036 -2.8962 2.1995 23 1 0.0108 -1.2307 1.6306 24 1 -1.8521 -2.6899 1.1388 25 1 -1.0820 -2.0640 -0.3254 26 1 -0.1779 -4.7433 0.6739 27 1 -1.7749 -4.6223 -0.1234 28 1 0.0677 -1.8726 -1.2095 29 1 0.1818 -2.5225 -2.8627 30 1 -1.9796 -1.3589 -2.5074 31 1 -2.3433 -2.4508 -1.1499 32 1 -1.8810 -3.2992 -4.0452 33 1 -3.4587 -3.2169 -3.2252 34 1 -2.5733 -5.5341 -3.2270 35 1 -2.6874 -4.8933 -1.5702 36 1 -0.1631 -4.9426 -3.2854 37 1 -0.5216 -6.0492 -1.9380 38 1 1.6000 -5.3303 -1.1963 39 1 1.9182 -3.8012 -2.0471 40 1 3.0092 -3.5517 0.0323 41 1 1.6991 -4.3202 0.9247 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190317769.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:18 Heat of formation + Delta-G solvation = 25.877057 kcal Electronic energy + Delta-G solvation = -19285.724330 eV Core-core repulsion = 16780.195669 eV Total energy + Delta-G solvation = -2505.528661 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.61382 -37.53722 -34.49547 -33.53588 -32.51014 -31.33800 -28.64868 -27.10692 -25.39703 -23.89816 -23.19913 -21.32897 -20.88865 -18.85301 -18.47191 -16.97829 -16.63772 -15.78339 -15.59162 -15.11239 -14.96111 -14.71331 -14.34724 -13.99629 -13.73123 -13.39924 -13.20629 -12.83064 -12.59116 -12.50300 -12.35407 -12.19619 -12.11381 -11.83020 -11.72114 -11.61879 -11.18439 -11.13482 -10.98820 -10.60130 -10.50495 -10.18516 -9.93329 -8.60924 -7.76651 -5.11435 1.49250 1.53687 1.59092 2.58700 3.34104 3.69546 3.92818 4.00135 4.08916 4.35719 4.43534 4.46669 4.57685 4.63287 4.77300 4.82121 4.84701 4.90582 4.93870 5.03722 5.04675 5.10274 5.13293 5.20461 5.28899 5.34678 5.39256 5.45471 5.50820 5.52441 5.59508 5.70584 5.74811 5.84579 5.87997 5.99958 6.34578 6.44608 6.55830 7.26052 7.97962 8.47352 9.25553 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.029917 B = 0.010240 C = 0.009159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.694261 B = 2733.618452 C = 3056.475990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.039 4.039 3 Si 0.948 3.052 4 H -0.293 1.293 5 H -0.298 1.298 6 H -0.280 1.280 7 C -0.253 4.253 8 H 0.059 0.941 9 N -0.597 5.597 10 C 0.164 3.836 11 C -0.180 4.180 12 C -0.094 4.094 13 C -0.037 4.037 14 C -0.144 4.144 15 C -0.115 4.115 16 C -0.115 4.115 17 C -0.114 4.114 18 C -0.107 4.107 19 C -0.133 4.133 20 C 0.153 3.847 21 H 0.249 0.751 22 H 0.008 0.992 23 H 0.066 0.934 24 H 0.021 0.979 25 H 0.137 0.863 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.142 0.858 29 H 0.009 0.991 30 H 0.031 0.969 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.032 0.968 40 H 0.022 0.978 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.022 -9.061 -2.959 10.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.235 4.235 3 Si 0.779 3.221 4 H -0.221 1.221 5 H -0.225 1.225 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.077 0.923 9 N -0.319 5.319 10 C 0.040 3.960 11 C -0.217 4.217 12 C -0.131 4.131 13 C -0.037 4.037 14 C -0.181 4.181 15 C -0.152 4.152 16 C -0.152 4.152 17 C -0.151 4.151 18 C -0.145 4.145 19 C -0.174 4.174 20 C 0.025 3.975 21 H 0.058 0.942 22 H 0.026 0.974 23 H 0.085 0.915 24 H 0.040 0.960 25 H 0.155 0.845 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.159 0.841 29 H 0.028 0.972 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.041 0.959 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.090 -8.919 -2.949 10.246 hybrid contribution 0.608 1.265 -0.101 1.407 sum -3.481 -7.655 -3.050 8.945 Atomic orbital electron populations 1.70014 1.05381 1.25159 1.54765 1.25230 0.95954 0.99858 1.02478 0.85539 0.78292 0.81417 0.76875 1.22077 1.22500 1.20532 1.19350 0.94910 0.87107 1.36929 0.92289 1.44413 1.31735 1.00821 1.54915 1.20218 0.85718 0.99667 0.90357 1.21754 0.96911 0.98737 1.04300 1.20995 0.99569 0.96677 0.95905 1.20275 0.93973 0.94649 0.94807 1.22426 0.95308 1.00153 1.00190 1.21657 0.96894 0.97317 0.99331 1.21538 1.00178 0.95418 0.98067 1.21541 0.96174 0.96213 1.01164 1.21725 0.95937 0.98353 0.98468 1.22911 0.95935 0.99374 0.99138 1.20376 0.95556 0.86896 0.94711 0.94156 0.97373 0.91542 0.96013 0.84549 0.92900 0.91378 0.84065 0.97233 0.94965 0.91740 0.93124 0.91627 0.90816 0.91703 0.93206 0.91395 0.91130 0.94924 0.95937 0.94219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.48 8.37 21.65 0.18 -48.30 16 2 C -0.04 -2.07 4.71 84.86 0.40 -1.67 16 3 Si 0.95 44.17 29.61 68.60 2.03 46.20 16 4 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.25 -13.42 8.67 84.03 0.73 -12.69 16 8 H 0.06 3.18 7.90 -2.91 -0.02 3.16 16 9 N -0.60 -28.78 1.78 -708.74 -1.26 -30.03 16 10 C 0.16 7.66 5.23 83.58 0.44 8.10 16 11 C -0.18 -7.58 3.66 28.32 0.10 -7.47 16 12 C -0.09 -3.36 4.64 29.50 0.14 -3.23 16 13 C -0.04 -1.32 0.46 -52.25 -0.02 -1.35 16 14 C -0.14 -6.08 3.87 30.65 0.12 -5.96 16 15 C -0.11 -4.32 4.98 30.57 0.15 -4.17 16 16 C -0.11 -3.41 5.93 30.59 0.18 -3.23 16 17 C -0.11 -3.02 5.70 30.58 0.17 -2.85 16 18 C -0.11 -3.15 4.52 30.68 0.14 -3.01 16 19 C -0.13 -4.92 5.18 31.71 0.16 -4.75 16 20 C 0.15 6.34 5.11 87.41 0.45 6.78 16 21 H 0.25 13.17 8.31 -92.70 -0.77 12.40 16 22 H 0.01 0.36 8.13 -2.38 -0.02 0.34 16 23 H 0.07 3.50 5.75 -2.39 -0.01 3.49 16 24 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.14 6.19 1.59 -2.39 0.00 6.18 16 26 H 0.05 1.86 6.24 -2.39 -0.01 1.84 16 27 H 0.07 2.16 5.73 -2.39 -0.01 2.15 16 28 H 0.14 6.89 1.81 -2.39 0.00 6.89 16 29 H 0.01 0.40 8.04 -2.39 -0.02 0.38 16 30 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.06 2.49 5.56 -2.39 -0.01 2.48 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16 35 H 0.06 1.71 6.14 -2.39 -0.01 1.69 16 36 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.07 1.75 8.13 -2.39 -0.02 1.73 16 38 H 0.07 2.20 7.94 -2.39 -0.02 2.18 16 39 H 0.03 1.29 7.85 -2.39 -0.02 1.27 16 40 H 0.02 0.94 7.98 -2.39 -0.02 0.92 16 41 H 0.04 1.53 6.87 -2.39 -0.02 1.51 16 Total: -1.00 -54.20 276.57 5.11 -49.09 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 1.00 Total: 18.54 kcal Atomic # 6 Polarization: -38.65 SS G_CDS: 3.16 Total: -35.50 kcal Atomic # 7 Polarization: -77.25 SS G_CDS: -1.08 Total: -78.33 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -54.20 5.11 -49.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190317769.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.965 kcal (2) G-P(sol) polarization free energy of solvation -54.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds