Wall clock time and date at job start Sun Mar 29 2020 21:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99986 * 2 1 4 4 H 1.48496 * 109.47284 * 270.00455 * 3 2 1 5 5 H 1.48504 * 109.46793 * 30.00252 * 3 2 1 6 6 H 1.48496 * 109.47179 * 150.00368 * 3 2 1 7 7 C 1.37874 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99882 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00069 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47259 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47213 * 180.02562 * 10 9 7 12 12 C 1.46806 * 110.99651 * 294.45100 * 11 10 9 13 13 C 1.53259 * 109.73798 * 174.41842 * 12 11 10 14 14 C 1.53005 * 109.01863 * 58.91104 * 13 12 11 15 15 H 1.09002 * 109.49043 * 61.89425 * 14 13 12 16 16 C 1.52915 * 109.97208 * 182.23943 * 14 13 12 17 17 C 1.53063 * 109.26639 * 180.21786 * 16 14 13 18 18 C 1.52959 * 109.65288 * 300.18990 * 17 16 14 19 19 C 1.53065 * 109.64904 * 59.55936 * 18 17 16 20 20 C 1.52906 * 109.25889 * 300.18582 * 19 18 17 21 21 H 1.09001 * 109.51525 * 300.59395 * 20 19 18 22 22 C 1.46919 * 110.99938 * 170.00325 * 11 10 9 23 23 H 0.97004 * 120.00232 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46844 * 60.00964 * 9 7 2 25 25 H 1.08997 * 109.47546 * 300.00937 * 9 7 2 26 26 H 1.09000 * 109.47211 * 60.00161 * 10 9 7 27 27 H 1.09009 * 109.47159 * 300.00215 * 10 9 7 28 28 H 1.09007 * 109.43169 * 294.48443 * 12 11 10 29 29 H 1.08994 * 109.43596 * 54.39608 * 12 11 10 30 30 H 1.09001 * 109.51387 * 299.08416 * 13 12 11 31 31 H 1.08997 * 109.63250 * 178.80888 * 13 12 11 32 32 H 1.09003 * 109.50027 * 300.15141 * 16 14 13 33 33 H 1.09002 * 109.50557 * 60.23514 * 16 14 13 34 34 H 1.09001 * 109.44255 * 60.24473 * 17 16 14 35 35 H 1.09003 * 109.44032 * 180.16887 * 17 16 14 36 36 H 1.09003 * 109.44086 * 179.61223 * 18 17 16 37 37 H 1.09001 * 109.44373 * 299.49741 * 18 17 16 38 38 H 1.09004 * 109.51161 * 60.12307 * 19 18 17 39 39 H 1.09009 * 109.50647 * 180.20707 * 19 18 17 40 40 H 1.08997 * 109.50103 * 65.78995 * 22 11 10 41 41 H 1.09006 * 109.51920 * 305.71956 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5108 -4.9342 -0.0012 12 6 0.7561 -5.1065 1.2462 13 6 -0.1062 -6.3705 1.1591 14 6 0.8015 -7.5773 0.9123 15 1 1.4888 -7.6927 1.7504 16 6 -0.0422 -8.8442 0.7661 17 6 0.8812 -10.0410 0.5256 18 6 1.6945 -9.8149 -0.7500 19 6 2.5302 -8.5403 -0.6085 20 6 1.5990 -7.3502 -0.3750 21 1 0.9119 -7.2549 -1.2158 22 6 2.4175 -6.0655 -0.2393 23 1 -0.4851 0.8401 0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6246 -2.5571 0.8895 26 1 2.8719 -3.6043 0.8895 27 1 2.8720 -3.6043 -0.8906 28 1 1.4511 -5.1990 2.0808 29 1 0.1133 -4.2405 1.4037 30 1 -0.8139 -6.2724 0.3359 31 1 -0.6496 -6.5083 2.0938 32 1 -0.6172 -9.0057 1.6780 33 1 -0.7225 -8.7330 -0.0783 34 1 1.5583 -10.1528 1.3725 35 1 0.2824 -10.9454 0.4179 36 1 2.3557 -10.6658 -0.9142 37 1 1.0179 -9.7130 -1.5985 38 1 3.2095 -8.6424 0.2378 39 1 3.1059 -8.3795 -1.5200 40 1 3.1080 -6.1610 0.5986 41 1 2.9804 -5.8942 -1.1569 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217658494.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:02 Heat of formation + Delta-G solvation = -38.191901 kcal Electronic energy + Delta-G solvation = -17424.596194 eV Core-core repulsion = 14916.289295 eV Total energy + Delta-G solvation = -2508.306899 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.73968 -36.59139 -33.39178 -32.48468 -31.54890 -29.04507 -28.70289 -25.02089 -23.28789 -22.76789 -21.72144 -20.43216 -19.63855 -19.32016 -16.40734 -15.25522 -14.98791 -14.65185 -14.53191 -14.36245 -13.90954 -13.76979 -13.53228 -12.73252 -12.58265 -12.34024 -11.96161 -11.78071 -11.38530 -11.27227 -11.15887 -11.04981 -10.87528 -10.70622 -10.68072 -10.53360 -10.35829 -9.88621 -9.78955 -9.66728 -9.18526 -9.07300 -8.29801 -7.61350 -5.96747 -3.98956 3.33898 3.39869 3.43130 4.38256 4.53700 4.68206 4.75092 4.76822 5.11123 5.20169 5.33422 5.38935 5.40294 5.46554 5.52479 5.61555 5.68145 5.79762 5.85858 5.92525 5.94988 5.99557 6.02041 6.12082 6.20123 6.22058 6.23715 6.31009 6.41778 6.45327 6.55330 6.61545 6.72178 7.02650 7.59219 7.67459 7.86292 7.95611 8.13107 8.47437 9.08398 9.64472 11.14657 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.057452 B = 0.004601 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.244191 B = 6084.664218 C = 6392.943565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.028 3.972 10 C 0.064 3.936 11 N -0.539 5.539 12 C 0.055 3.945 13 C -0.111 4.111 14 C -0.082 4.082 15 H 0.062 0.938 16 C -0.113 4.113 17 C -0.118 4.118 18 C -0.117 4.117 19 C -0.113 4.113 20 C -0.078 4.078 21 H 0.077 0.923 22 C 0.061 3.939 23 H 0.260 0.740 24 H 0.024 0.976 25 H 0.017 0.983 26 H 0.017 0.983 27 H 0.059 0.941 28 H 0.022 0.978 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.023 0.977 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.856 -18.795 1.131 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.063 4.063 11 N -0.263 5.263 12 C -0.073 4.073 13 C -0.149 4.149 14 C -0.101 4.101 15 H 0.080 0.920 16 C -0.151 4.151 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.151 4.151 20 C -0.097 4.097 21 H 0.095 0.905 22 C -0.067 4.067 23 H 0.070 0.930 24 H 0.043 0.957 25 H 0.035 0.965 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.040 0.960 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.041 0.959 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.374 -18.653 0.754 18.718 hybrid contribution 1.082 0.983 0.685 1.614 sum 2.455 -17.670 1.439 17.898 Atomic orbital electron populations 1.69974 1.06012 1.26518 1.50768 1.24987 0.94819 0.99130 0.95347 0.86606 0.79811 0.83544 0.78100 1.20648 1.21236 1.19953 1.21209 0.92972 0.91125 1.50734 0.92851 1.19101 0.93996 0.90106 0.97755 1.22307 0.96699 0.88501 0.98774 1.61932 1.27295 1.02290 1.34811 1.22112 0.96741 0.98327 0.90079 1.21666 0.97931 0.93765 1.01517 1.21186 0.97007 0.94323 0.97544 0.91960 1.21571 0.97719 0.94271 1.01491 1.21528 0.98323 0.97814 0.97930 1.21511 0.98611 0.97404 0.97963 1.21546 0.97754 0.94366 1.01477 1.21165 0.97059 0.93287 0.98181 0.90465 1.22062 0.93892 0.90811 0.99960 0.93032 0.95740 0.96483 0.96438 0.92224 0.95967 0.89631 0.91191 0.92081 0.92287 0.91913 0.92320 0.92440 0.92444 0.92028 0.92317 0.92018 0.95887 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.03 0.74 4.89 -27.89 -0.14 0.60 16 10 C 0.06 1.40 4.90 -3.82 -0.02 1.38 16 11 N -0.54 -10.19 4.65 -234.57 -1.09 -11.28 16 12 C 0.06 0.98 5.29 -3.74 -0.02 0.96 16 13 C -0.11 -1.58 5.43 -26.59 -0.14 -1.72 16 14 C -0.08 -1.02 2.00 -90.59 -0.18 -1.20 16 15 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 16 C -0.11 -1.18 5.25 -26.74 -0.14 -1.32 16 17 C -0.12 -1.10 5.92 -26.72 -0.16 -1.25 16 18 C -0.12 -1.10 5.92 -26.72 -0.16 -1.26 16 19 C -0.11 -1.21 5.24 -26.75 -0.14 -1.35 16 20 C -0.08 -1.02 2.10 -90.64 -0.19 -1.21 16 21 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 22 C 0.06 0.95 4.78 -3.85 -0.02 0.93 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.02 0.47 6.42 -51.93 -0.33 0.14 16 26 H 0.02 0.38 8.13 -51.93 -0.42 -0.04 16 27 H 0.06 1.29 7.99 -51.92 -0.41 0.87 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 1.70 6.21 -51.93 -0.32 1.37 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 1.05 8.02 -51.93 -0.42 0.63 16 LS Contribution 310.04 15.07 4.67 4.67 Total: -1.00 -29.73 310.04 -10.21 -39.94 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -7.79 Total: -4.55 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -1.72 Total: -19.20 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: -0.35 Total: -37.73 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.73 -10.21 -39.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217658494.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.748 kcal (2) G-P(sol) polarization free energy of solvation -29.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds