Wall clock time and date at job start Sun Mar 29 2020 21:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99986 * 2 1 4 4 H 1.48496 * 109.47284 * 270.00455 * 3 2 1 5 5 H 1.48504 * 109.46793 * 30.00252 * 3 2 1 6 6 H 1.48496 * 109.47179 * 150.00368 * 3 2 1 7 7 C 1.37874 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99882 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00069 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47259 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47213 * 180.02562 * 10 9 7 12 12 C 1.46806 * 110.99651 * 294.45100 * 11 10 9 13 13 C 1.53259 * 109.73798 * 174.41842 * 12 11 10 14 14 C 1.53005 * 109.01863 * 58.91104 * 13 12 11 15 15 H 1.09002 * 109.49043 * 61.89425 * 14 13 12 16 16 C 1.52915 * 109.97208 * 182.23943 * 14 13 12 17 17 C 1.53063 * 109.26639 * 180.21786 * 16 14 13 18 18 C 1.52959 * 109.65288 * 300.18990 * 17 16 14 19 19 C 1.53065 * 109.64904 * 59.55936 * 18 17 16 20 20 C 1.52906 * 109.25889 * 300.18582 * 19 18 17 21 21 H 1.09001 * 109.51525 * 300.59395 * 20 19 18 22 22 C 1.46919 * 110.99938 * 170.00325 * 11 10 9 23 23 H 0.97004 * 120.00232 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46844 * 60.00964 * 9 7 2 25 25 H 1.08997 * 109.47546 * 300.00937 * 9 7 2 26 26 H 1.09000 * 109.47211 * 60.00161 * 10 9 7 27 27 H 1.09009 * 109.47159 * 300.00215 * 10 9 7 28 28 H 1.09007 * 109.43169 * 294.48443 * 12 11 10 29 29 H 1.08994 * 109.43596 * 54.39608 * 12 11 10 30 30 H 1.09001 * 109.51387 * 299.08416 * 13 12 11 31 31 H 1.08997 * 109.63250 * 178.80888 * 13 12 11 32 32 H 1.09003 * 109.50027 * 300.15141 * 16 14 13 33 33 H 1.09002 * 109.50557 * 60.23514 * 16 14 13 34 34 H 1.09001 * 109.44255 * 60.24473 * 17 16 14 35 35 H 1.09003 * 109.44032 * 180.16887 * 17 16 14 36 36 H 1.09003 * 109.44086 * 179.61223 * 18 17 16 37 37 H 1.09001 * 109.44373 * 299.49741 * 18 17 16 38 38 H 1.09004 * 109.51161 * 60.12307 * 19 18 17 39 39 H 1.09009 * 109.50647 * 180.20707 * 19 18 17 40 40 H 1.08997 * 109.50103 * 65.78995 * 22 11 10 41 41 H 1.09006 * 109.51920 * 305.71956 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5108 -4.9342 -0.0012 12 6 0.7561 -5.1065 1.2462 13 6 -0.1062 -6.3705 1.1591 14 6 0.8015 -7.5773 0.9123 15 1 1.4888 -7.6927 1.7504 16 6 -0.0422 -8.8442 0.7661 17 6 0.8812 -10.0410 0.5256 18 6 1.6945 -9.8149 -0.7500 19 6 2.5302 -8.5403 -0.6085 20 6 1.5990 -7.3502 -0.3750 21 1 0.9119 -7.2549 -1.2158 22 6 2.4175 -6.0655 -0.2393 23 1 -0.4851 0.8401 0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6246 -2.5571 0.8895 26 1 2.8719 -3.6043 0.8895 27 1 2.8720 -3.6043 -0.8906 28 1 1.4511 -5.1990 2.0808 29 1 0.1133 -4.2405 1.4037 30 1 -0.8139 -6.2724 0.3359 31 1 -0.6496 -6.5083 2.0938 32 1 -0.6172 -9.0057 1.6780 33 1 -0.7225 -8.7330 -0.0783 34 1 1.5583 -10.1528 1.3725 35 1 0.2824 -10.9454 0.4179 36 1 2.3557 -10.6658 -0.9142 37 1 1.0179 -9.7130 -1.5985 38 1 3.2095 -8.6424 0.2378 39 1 3.1059 -8.3795 -1.5200 40 1 3.1080 -6.1610 0.5986 41 1 2.9804 -5.8942 -1.1569 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217658494.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:02 Heat of formation + Delta-G solvation = -54.893064 kcal Electronic energy + Delta-G solvation = -17425.320411 eV Core-core repulsion = 14916.289295 eV Total energy + Delta-G solvation = -2509.031116 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.86967 -37.90035 -35.32835 -33.77937 -32.88678 -30.70497 -29.87326 -26.80696 -24.55112 -24.24552 -22.74762 -21.95044 -20.71235 -20.56437 -18.59376 -16.60250 -16.50255 -16.10263 -15.95153 -15.52016 -15.26811 -14.85022 -14.58702 -14.24487 -14.17159 -13.87019 -13.29452 -13.13692 -12.87411 -12.77475 -12.47284 -12.35355 -12.30138 -12.11175 -11.79984 -11.79358 -11.63407 -11.48468 -11.28856 -11.24654 -10.69330 -10.63514 -10.49971 -9.15681 -8.20736 -6.32538 1.39408 1.41392 1.52327 2.39680 3.05573 3.12402 3.72922 3.76837 3.81743 4.09697 4.23665 4.26088 4.36378 4.47078 4.51533 4.54941 4.59428 4.66801 4.67875 4.71690 4.82254 4.85346 4.96945 4.99082 5.06164 5.09271 5.15263 5.23489 5.34386 5.35960 5.37878 5.44090 5.45308 5.50477 5.65653 5.69311 5.78701 6.11552 6.33843 6.37086 6.84342 7.36615 8.91524 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.057452 B = 0.004601 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.244191 B = 6084.664218 C = 6392.943565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.037 3.963 10 C 0.080 3.920 11 N -0.552 5.552 12 C 0.056 3.944 13 C -0.104 4.104 14 C -0.078 4.078 15 H 0.064 0.936 16 C -0.109 4.109 17 C -0.116 4.116 18 C -0.116 4.116 19 C -0.109 4.109 20 C -0.073 4.073 21 H 0.065 0.935 22 C 0.060 3.940 23 H 0.264 0.736 24 H -0.009 1.009 25 H -0.006 1.006 26 H 0.016 0.984 27 H 0.062 0.938 28 H 0.024 0.976 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.027 0.973 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.991 -20.161 1.312 20.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.077 0.923 9 C 0.000 4.000 10 C -0.048 4.048 11 N -0.276 5.276 12 C -0.072 4.072 13 C -0.142 4.142 14 C -0.096 4.096 15 H 0.083 0.917 16 C -0.147 4.147 17 C -0.153 4.153 18 C -0.153 4.153 19 C -0.147 4.147 20 C -0.092 4.092 21 H 0.083 0.917 22 C -0.067 4.067 23 H 0.073 0.927 24 H 0.009 0.991 25 H 0.012 0.988 26 H 0.034 0.966 27 H 0.081 0.919 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.045 0.955 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.515 -20.044 0.933 20.223 hybrid contribution 0.689 1.403 0.628 1.685 sum 3.204 -18.641 1.561 18.979 Atomic orbital electron populations 1.70115 1.07861 1.27809 1.51373 1.25973 0.95755 1.03348 0.94525 0.85413 0.78605 0.78234 0.78572 1.19652 1.20595 1.18747 1.21628 0.93494 0.92318 1.51061 0.92257 1.18917 0.94180 0.91962 0.94968 1.21955 0.95382 0.88696 0.98757 1.61871 1.27921 1.02184 1.35627 1.22095 0.96605 0.98862 0.89662 1.21631 0.97592 0.92913 1.02087 1.21156 0.96849 0.94417 0.97202 0.91724 1.21537 0.97657 0.93591 1.01895 1.21524 0.98250 0.97633 0.97932 1.21511 0.98682 0.97065 0.98045 1.21514 0.97463 0.93827 1.01875 1.21129 0.97062 0.92923 0.98084 0.91689 1.22172 0.93843 0.90617 1.00083 0.92719 0.99080 0.98769 0.96566 0.91950 0.95742 0.92939 0.92186 0.90342 0.91316 0.92262 0.91897 0.90940 0.90813 0.92206 0.91869 0.91611 0.95473 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.05 13.29 21.45 0.28 -57.77 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.55 -32.18 9.11 25.60 0.23 -31.95 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.04 2.07 4.89 29.85 0.15 2.22 16 10 C 0.08 3.59 4.90 86.30 0.42 4.01 16 11 N -0.55 -21.30 4.65 -896.03 -4.17 -25.47 16 12 C 0.06 2.02 5.29 86.41 0.46 2.48 16 13 C -0.10 -2.94 5.43 30.68 0.17 -2.77 16 14 C -0.08 -1.81 2.00 -10.78 -0.02 -1.83 16 15 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 16 C -0.11 -2.02 5.25 30.59 0.16 -1.86 16 17 C -0.12 -1.77 5.92 30.60 0.18 -1.59 16 18 C -0.12 -1.82 5.92 30.60 0.18 -1.64 16 19 C -0.11 -2.07 5.24 30.58 0.16 -1.91 16 20 C -0.07 -1.81 2.10 -10.81 -0.02 -1.83 16 21 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 22 C 0.06 1.85 4.78 86.27 0.41 2.26 16 23 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 24 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 25 H -0.01 -0.36 6.42 -2.39 -0.02 -0.37 16 26 H 0.02 0.72 8.13 -2.39 -0.02 0.71 16 27 H 0.06 2.74 7.99 -2.38 -0.02 2.72 16 28 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.05 2.22 6.21 -2.39 -0.01 2.20 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.07 2.10 8.02 -2.38 -0.02 2.08 16 Total: -1.00 -64.92 310.04 2.03 -62.89 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 0.95 Total: 7.15 kcal Atomic # 6 Polarization: -36.79 SS G_CDS: 2.94 Total: -33.86 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -3.88 Total: -83.24 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -64.92 2.03 -62.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217658494.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.995 kcal (2) G-P(sol) polarization free energy of solvation -64.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds