Wall clock time and date at job start Sun Mar 29 2020 22:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47511 * 2 1 4 4 C 1.53004 * 109.46691 * 119.99675 * 2 1 3 5 5 N 1.46907 * 109.46914 * 176.62473 * 4 2 1 6 6 C 1.46901 * 110.99718 * 159.76830 * 5 4 2 7 7 C 1.50697 * 109.47069 * 288.17064 * 6 5 4 8 8 H 1.08001 * 120.00446 * 3.54318 * 7 6 5 9 9 C 1.37883 * 119.99916 * 183.55077 * 7 6 5 10 10 N 1.31514 * 119.99814 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99865 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.46954 * 90.00360 * 11 9 7 13 13 H 1.48498 * 109.47017 * 210.00521 * 11 9 7 14 14 H 1.48499 * 109.47148 * 330.00317 * 11 9 7 15 15 C 1.46900 * 110.99956 * 283.72086 * 5 4 2 16 16 H 1.08998 * 109.24424 * 48.32399 * 15 5 4 17 17 C 1.50072 * 109.35844 * 288.66466 * 15 5 4 18 18 C 1.29441 * 124.07562 * 222.65796 * 17 15 5 19 19 C 1.50069 * 124.07328 * 0.47650 * 18 17 15 20 20 C 1.53019 * 110.15147 * 342.86353 * 19 18 17 21 21 C 1.53020 * 109.35492 * 167.97750 * 15 5 4 22 22 H 1.09000 * 109.46811 * 300.00595 * 1 2 3 23 23 H 1.08996 * 109.46729 * 59.99766 * 1 2 3 24 24 H 1.08991 * 109.47196 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47008 * 239.99233 * 2 1 3 26 26 H 1.09004 * 109.47244 * 64.98498 * 3 2 1 27 27 H 1.09000 * 109.47279 * 184.98674 * 3 2 1 28 28 H 1.09003 * 109.46764 * 304.98652 * 3 2 1 29 29 H 1.09005 * 109.47151 * 56.62973 * 4 2 1 30 30 H 1.08994 * 109.47624 * 296.62709 * 4 2 1 31 31 H 1.09002 * 109.47482 * 48.16990 * 6 5 4 32 32 H 1.09003 * 109.47006 * 168.16966 * 6 5 4 33 33 H 0.96999 * 119.99654 * 179.97438 * 10 9 7 34 34 H 1.07994 * 117.95877 * 42.64629 * 17 15 5 35 35 H 1.07995 * 117.96119 * 180.44641 * 18 17 15 36 36 H 1.09000 * 109.35639 * 222.65809 * 19 18 17 37 37 H 1.09006 * 109.35831 * 103.07399 * 19 18 17 38 38 H 1.09000 * 109.64611 * 289.75591 * 20 19 18 39 39 H 1.08994 * 109.82236 * 169.21821 * 20 19 18 40 40 H 1.09004 * 109.64460 * 289.32744 * 21 15 5 41 41 H 1.09004 * 109.64500 * 49.95878 * 21 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5067 -0.7923 1.2093 6 6 4.0593 -1.0244 2.5505 7 6 3.9084 0.2252 3.3791 8 1 3.3971 1.0849 2.9718 9 6 4.4233 0.2711 4.6574 10 7 4.2920 1.3619 5.3804 11 14 5.3071 -1.2160 5.3623 12 1 6.7548 -1.1285 5.0431 13 1 5.1261 -1.2469 6.8358 14 1 4.7431 -2.4546 4.7682 15 6 3.9582 -1.8256 0.2678 16 1 3.4273 -1.7076 -0.6768 17 6 3.6630 -3.1818 0.8385 18 6 4.4837 -4.1818 0.7938 19 6 5.8491 -4.1218 0.1741 20 6 5.9591 -2.9010 -0.7419 21 6 5.4615 -1.6708 0.0275 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.7516 1.9299 0.9313 27 1 3.1265 1.4437 -0.0893 28 1 1.6057 1.9814 -0.8420 29 1 1.6281 -1.7300 1.2801 30 1 1.7268 -0.1737 2.1383 31 1 3.5222 -1.8440 3.0280 32 1 5.1156 -1.2810 2.4689 33 1 4.6539 1.3940 6.2798 34 1 2.7064 -3.3327 1.3164 35 1 4.1661 -5.1173 1.2300 36 1 6.0217 -5.0270 -0.4081 37 1 6.6002 -4.0520 0.9609 38 1 5.3439 -3.0518 -1.6290 39 1 6.9977 -2.7529 -1.0373 40 1 5.6481 -0.7714 -0.5594 41 1 5.9803 -1.6021 0.9837 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218968735.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:09 Heat of formation + Delta-G solvation = 0.521855 kcal Electronic energy + Delta-G solvation = -17980.669808 eV Core-core repulsion = 15474.041663 eV Total energy + Delta-G solvation = -2506.628145 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.12352 -36.29584 -33.83842 -32.28664 -30.75043 -29.18754 -27.43947 -26.60580 -24.48315 -22.59382 -21.88156 -20.38442 -19.32237 -17.37202 -16.67123 -15.99785 -15.05196 -14.48603 -14.40811 -13.82341 -13.63351 -13.22497 -12.94719 -12.60888 -12.40740 -12.32583 -12.16553 -12.02528 -11.77725 -11.43635 -11.14984 -10.86897 -10.73243 -10.50263 -10.41328 -10.27531 -10.08979 -9.99544 -9.78513 -9.66519 -9.19739 -8.69661 -8.50563 -7.26306 -6.01023 -3.96575 2.59578 3.30193 3.37821 3.41512 4.45766 4.72402 5.00812 5.07979 5.25681 5.32182 5.39668 5.46881 5.54609 5.61813 5.65275 5.76831 5.89251 5.94773 5.99393 6.03943 6.11873 6.14635 6.20951 6.29038 6.34493 6.45524 6.50675 6.61960 6.65896 6.69940 6.86474 6.94441 6.97259 7.06225 7.07066 7.20685 7.70477 8.00743 8.14692 8.72383 9.09841 9.62049 11.12276 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.014637 B = 0.011557 C = 0.007404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.465959 B = 2422.199015 C = 3781.083242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 C -0.132 4.132 4 C 0.062 3.938 5 N -0.512 5.512 6 C 0.164 3.836 7 C -0.503 4.503 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.902 5.902 11 Si 0.870 3.130 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.268 1.268 15 C 0.110 3.890 16 H 0.079 0.921 17 C -0.167 4.167 18 C -0.164 4.164 19 C -0.088 4.088 20 C -0.118 4.118 21 C -0.111 4.111 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.046 0.954 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.034 0.966 29 H 0.020 0.980 30 H 0.086 0.914 31 H -0.013 1.013 32 H 0.026 0.974 33 H 0.262 0.738 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.437 -8.139 -11.905 14.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 C -0.189 4.189 4 C -0.066 4.066 5 N -0.234 5.234 6 C 0.037 3.963 7 C -0.542 4.542 8 H 0.099 0.901 9 C -0.133 4.133 10 N -0.541 5.541 11 Si 0.697 3.303 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.193 1.193 15 C 0.001 3.999 16 H 0.097 0.903 17 C -0.187 4.187 18 C -0.183 4.183 19 C -0.125 4.125 20 C -0.156 4.156 21 C -0.149 4.149 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.039 0.961 30 H 0.105 0.895 31 H 0.004 0.996 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.226 -7.581 -11.870 14.138 hybrid contribution 0.108 -1.685 1.003 1.964 sum -1.118 -9.266 -10.867 14.325 Atomic orbital electron populations 1.21818 0.96180 1.00899 1.01414 1.21081 0.94102 0.97425 0.98172 1.21650 1.02192 0.94738 1.00331 1.22132 0.88253 0.97702 0.98500 1.62228 1.07902 1.43019 1.10224 1.20155 0.94531 0.96542 0.85022 1.21082 1.36365 0.99292 0.97423 0.90065 1.24877 0.95982 0.95515 0.96924 1.69895 1.46746 1.27093 1.10400 0.86940 0.80676 0.84315 0.78359 1.20234 1.21345 1.19263 1.20650 0.95944 0.86979 0.96340 0.90328 1.22895 0.99443 0.96486 0.99880 1.21915 0.96125 0.98427 1.01833 1.20413 0.95299 0.98181 0.98586 1.21603 1.00752 0.95087 0.98125 1.21657 0.95065 0.97067 1.01119 0.92616 0.93217 0.93457 0.92337 0.92764 0.91417 0.94682 0.96142 0.89548 0.99558 0.95596 0.92808 0.88454 0.88874 0.91807 0.91252 0.92180 0.91932 0.91289 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.19 37.16 0.34 -1.62 16 2 C -0.09 -1.40 2.97 -90.62 -0.27 -1.67 16 3 C -0.13 -2.18 9.00 37.16 0.33 -1.84 16 4 C 0.06 1.17 4.11 -3.82 -0.02 1.15 16 5 N -0.51 -10.38 3.78 -229.82 -0.87 -11.25 16 6 C 0.16 3.94 2.86 -4.98 -0.01 3.92 16 7 C -0.50 -14.18 8.95 -34.44 -0.31 -14.49 16 8 H 0.08 2.48 7.83 -52.49 -0.41 2.07 16 9 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 10 N -0.90 -27.72 13.96 55.43 0.77 -26.94 16 11 Si 0.87 21.82 27.40 -169.99 -4.66 17.16 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.27 -6.56 6.64 56.52 0.38 -6.19 16 15 C 0.11 1.88 2.36 -69.16 -0.16 1.72 16 16 H 0.08 1.26 6.57 -51.93 -0.34 0.92 16 17 C -0.17 -2.80 7.35 -35.90 -0.26 -3.07 16 18 C -0.16 -2.48 9.80 -35.90 -0.35 -2.83 16 19 C -0.09 -1.16 6.11 -28.18 -0.17 -1.33 16 20 C -0.12 -1.53 6.01 -26.51 -0.16 -1.69 16 21 C -0.11 -1.80 5.43 -26.51 -0.14 -1.94 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.88 6.71 -51.93 -0.35 0.53 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.07 1.22 7.85 -51.93 -0.41 0.81 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.02 0.37 6.39 -51.93 -0.33 0.04 16 30 H 0.09 1.86 6.97 -51.93 -0.36 1.50 16 31 H -0.01 -0.33 6.79 -51.93 -0.35 -0.68 16 32 H 0.03 0.64 5.18 -51.93 -0.27 0.37 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.10 1.68 6.74 -52.49 -0.35 1.33 16 35 H 0.09 1.30 8.06 -52.49 -0.42 0.87 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.07 1.36 6.06 -51.93 -0.31 1.04 16 LS Contribution 310.49 15.07 4.68 4.68 Total: -1.00 -29.45 310.49 -8.66 -38.12 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -7.30 Total: 0.05 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -1.28 Total: -21.82 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: -0.10 Total: -38.19 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.66 Total: 17.16 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.45 -8.66 -38.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218968735.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.637 kcal (2) G-P(sol) polarization free energy of solvation -29.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds