Wall clock time and date at job start Sun Mar 29 2020 22:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47514 * 2 1 4 4 C 1.53004 * 109.47061 * 120.00501 * 2 1 3 5 5 N 1.46902 * 109.47126 * 148.02673 * 4 2 1 6 6 C 1.46897 * 111.00141 * 297.88619 * 5 4 2 7 7 C 1.50698 * 109.47148 * 297.45939 * 6 5 4 8 8 H 1.07998 * 119.99754 * 3.53397 * 7 6 5 9 9 C 1.37876 * 120.00266 * 183.54182 * 7 6 5 10 10 N 1.31519 * 119.99765 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00355 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47044 * 89.99540 * 11 9 7 13 13 H 1.48493 * 109.47443 * 210.00196 * 11 9 7 14 14 H 1.48500 * 109.46888 * 330.00019 * 11 9 7 15 15 C 1.46908 * 110.99802 * 61.83872 * 5 4 2 16 16 H 1.09000 * 109.35958 * 298.20832 * 15 5 4 17 17 C 1.50066 * 109.35893 * 57.93277 * 15 5 4 18 18 C 1.29443 * 124.07640 * 137.19814 * 17 15 5 19 19 C 1.50059 * 124.07665 * 359.79152 * 18 17 15 20 20 C 1.52875 * 110.23063 * 16.69164 * 19 18 17 21 21 C 1.53025 * 109.24484 * 178.55120 * 15 5 4 22 22 H 1.09002 * 109.46861 * 299.99877 * 1 2 3 23 23 H 1.09004 * 109.47234 * 59.99548 * 1 2 3 24 24 H 1.08992 * 109.47589 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46861 * 240.00123 * 2 1 3 26 26 H 1.09008 * 109.47046 * 65.81079 * 3 2 1 27 27 H 1.09001 * 109.47343 * 185.81138 * 3 2 1 28 28 H 1.09003 * 109.47527 * 305.81872 * 3 2 1 29 29 H 1.08997 * 109.47269 * 28.02765 * 4 2 1 30 30 H 1.08999 * 109.46516 * 268.02406 * 4 2 1 31 31 H 1.09006 * 109.46955 * 57.45825 * 6 5 4 32 32 H 1.08999 * 109.47521 * 177.45502 * 6 5 4 33 33 H 0.96994 * 119.99705 * 179.97438 * 10 9 7 34 34 H 1.08002 * 117.96183 * 317.17503 * 17 15 5 35 35 H 1.08008 * 117.96038 * 179.51048 * 18 17 15 36 36 H 1.09001 * 109.36075 * 137.08045 * 19 18 17 37 37 H 1.09001 * 109.35939 * 256.66164 * 19 18 17 38 38 H 1.08998 * 109.69957 * 191.10189 * 20 19 18 39 39 H 1.09001 * 109.43860 * 70.56197 * 20 19 18 40 40 H 1.09007 * 109.64033 * 310.11538 * 21 15 5 41 41 H 1.09002 * 109.64323 * 70.52987 * 21 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.3109 -1.3915 0.9431 6 6 3.1306 -2.4118 -0.0982 7 6 2.1897 -3.4780 0.4007 8 1 1.7233 -3.3763 1.3694 9 6 1.9245 -4.5834 -0.3795 10 7 2.4922 -4.7071 -1.5593 11 14 0.7587 -5.9054 0.2392 12 1 -0.6269 -5.5817 -0.1856 13 1 1.1557 -7.2197 -0.3265 14 1 0.8206 -5.9656 1.7217 15 6 4.3391 -0.4174 0.5533 16 1 4.0206 0.1022 -0.3504 17 6 4.5258 0.5787 1.6601 18 6 5.6788 1.0054 2.0650 19 6 6.9903 0.5604 1.4872 20 6 6.7699 -0.1123 0.1322 21 6 5.6527 -1.1529 0.2792 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.7642 1.9254 0.9375 27 1 3.1251 1.4441 -0.1041 28 1 1.5942 1.9855 -0.8333 29 1 1.3058 -1.4621 1.5662 30 1 2.1944 0.0027 2.0492 31 1 2.7135 -1.9485 -0.9924 32 1 4.0945 -2.8609 -0.3377 33 1 2.3059 -5.4849 -2.1080 34 1 3.6431 0.9637 2.1491 35 1 5.6980 1.7301 2.8656 36 1 7.6419 1.4251 1.3617 37 1 7.4623 -0.1493 2.1667 38 1 7.6887 -0.6038 -0.1878 39 1 6.4774 0.6382 -0.6021 40 1 5.8799 -1.8195 1.1112 41 1 5.5636 -1.7318 -0.6401 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218968767.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:11 Heat of formation + Delta-G solvation = 7.347274 kcal Electronic energy + Delta-G solvation = -18058.562102 eV Core-core repulsion = 15552.229929 eV Total energy + Delta-G solvation = -2506.332172 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.20390 -36.43700 -33.49229 -32.23422 -30.75096 -29.15747 -26.87803 -26.62079 -24.61038 -22.68980 -21.69420 -20.63813 -19.15799 -17.28691 -16.54042 -15.63708 -15.30918 -14.74691 -14.02336 -13.78933 -13.51415 -13.17216 -12.81439 -12.49110 -12.38124 -12.35367 -12.06236 -11.78701 -11.70608 -11.18871 -10.94185 -10.79578 -10.75019 -10.57443 -10.47529 -10.30524 -9.99931 -9.90084 -9.86810 -9.37803 -9.03182 -8.71489 -8.36951 -7.02142 -5.99144 -3.98814 2.65177 3.33059 3.39636 3.43959 4.45809 4.99723 5.03186 5.16600 5.35249 5.41379 5.45110 5.51343 5.58576 5.67172 5.78741 5.83219 5.90398 6.00045 6.07496 6.11937 6.19829 6.21200 6.26033 6.29772 6.35390 6.44177 6.55266 6.67122 6.72029 6.82915 6.86501 7.00616 7.04400 7.28358 7.43628 7.48398 7.85112 8.16085 8.31629 8.63796 9.08266 9.64437 11.11821 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022538 B = 0.008214 C = 0.006664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.047217 B = 3407.918403 C = 4200.641264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.137 4.137 3 C -0.152 4.152 4 C 0.067 3.933 5 N -0.527 5.527 6 C 0.187 3.813 7 C -0.502 4.502 8 H 0.061 0.939 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.893 3.107 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.106 3.894 16 H 0.049 0.951 17 C -0.124 4.124 18 C -0.172 4.172 19 C -0.085 4.085 20 C -0.118 4.118 21 C -0.112 4.112 22 H 0.044 0.956 23 H 0.042 0.958 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.042 0.958 29 H 0.081 0.919 30 H 0.054 0.946 31 H -0.006 1.006 32 H 0.037 0.963 33 H 0.260 0.740 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.750 11.311 3.641 12.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.157 4.157 3 C -0.209 4.209 4 C -0.061 4.061 5 N -0.250 5.250 6 C 0.062 3.938 7 C -0.540 4.540 8 H 0.079 0.921 9 C -0.145 4.145 10 N -0.539 5.539 11 Si 0.721 3.279 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.002 4.002 16 H 0.066 0.934 17 C -0.142 4.142 18 C -0.191 4.191 19 C -0.122 4.122 20 C -0.156 4.156 21 C -0.150 4.150 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.079 0.921 25 H 0.100 0.900 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.012 0.988 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.924 10.929 3.925 12.257 hybrid contribution -1.041 -0.335 -0.472 1.191 sum 2.883 10.594 3.452 11.509 Atomic orbital electron populations 1.21745 0.95750 1.01893 1.00115 1.21826 0.95963 0.95731 1.02137 1.22193 1.01491 0.96698 1.00517 1.22217 0.92368 0.96763 0.94796 1.62468 1.05513 1.12030 1.44960 1.19844 0.97429 0.88617 0.87921 1.21156 1.25693 1.04153 1.03044 0.92058 1.24951 0.96465 0.98142 0.94975 1.69953 1.43841 1.29566 1.10504 0.86568 0.80999 0.81207 0.79078 1.20841 1.21330 1.19850 1.20554 0.93377 0.91853 0.94447 0.93411 1.22216 0.97269 0.96927 0.97784 1.21901 0.94392 1.01867 1.00969 1.20362 0.95454 0.99604 0.96815 1.21587 0.98892 0.98439 0.96722 1.21675 0.93248 0.97372 1.02699 0.93643 0.93894 0.92081 0.90026 0.93445 0.91968 0.93852 0.90077 0.92787 0.98843 0.94471 0.93054 0.88009 0.88671 0.92008 0.91364 0.91997 0.92350 0.90987 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.01 37.16 0.33 -1.91 16 2 C -0.14 -2.43 2.30 -90.62 -0.21 -2.64 16 3 C -0.15 -2.28 7.95 37.15 0.30 -1.98 16 4 C 0.07 1.29 4.74 -3.82 -0.02 1.27 16 5 N -0.53 -11.22 4.59 -229.82 -1.05 -12.27 16 6 C 0.19 4.74 4.22 -4.98 -0.02 4.72 16 7 C -0.50 -13.88 8.54 -34.44 -0.29 -14.18 16 8 H 0.06 1.69 6.73 -52.49 -0.35 1.34 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 11 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 C 0.11 1.92 1.61 -69.15 -0.11 1.81 16 16 H 0.05 0.90 5.30 -51.93 -0.28 0.62 16 17 C -0.12 -1.95 7.37 -35.90 -0.26 -2.22 16 18 C -0.17 -2.40 9.80 -35.90 -0.35 -2.75 16 19 C -0.09 -1.09 6.11 -28.26 -0.17 -1.26 16 20 C -0.12 -1.65 6.00 -26.60 -0.16 -1.81 16 21 C -0.11 -1.97 4.61 -26.52 -0.12 -2.10 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 1.10 8.11 -51.93 -0.42 0.68 16 25 H 0.08 1.71 5.47 -51.93 -0.28 1.43 16 26 H 0.05 0.65 7.98 -51.92 -0.41 0.23 16 27 H 0.06 0.95 4.41 -51.93 -0.23 0.72 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.72 6.14 -51.93 -0.32 1.40 16 30 H 0.05 0.94 5.58 -51.93 -0.29 0.65 16 31 H -0.01 -0.16 5.89 -51.93 -0.31 -0.47 16 32 H 0.04 1.02 6.13 -51.93 -0.32 0.70 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.10 1.57 5.67 -52.49 -0.30 1.27 16 35 H 0.10 1.16 8.06 -52.48 -0.42 0.74 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 40 H 0.07 1.35 8.13 -51.93 -0.42 0.93 16 41 H 0.07 1.32 6.83 -51.93 -0.35 0.97 16 LS Contribution 302.18 15.07 4.55 4.55 Total: -1.00 -28.48 302.18 -8.78 -37.26 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.80 Total: 1.14 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: -1.19 Total: -21.58 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.32 Total: -38.02 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.48 -8.78 -37.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218968767.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.607 kcal (2) G-P(sol) polarization free energy of solvation -28.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds