Wall clock time and date at job start Sun Mar 29 2020 22:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47514 * 2 1 4 4 C 1.53004 * 109.47061 * 120.00501 * 2 1 3 5 5 N 1.46902 * 109.47126 * 148.02673 * 4 2 1 6 6 C 1.46897 * 111.00141 * 297.88619 * 5 4 2 7 7 C 1.50698 * 109.47148 * 297.45939 * 6 5 4 8 8 H 1.07998 * 119.99754 * 3.53397 * 7 6 5 9 9 C 1.37876 * 120.00266 * 183.54182 * 7 6 5 10 10 N 1.31519 * 119.99765 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00355 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47044 * 89.99540 * 11 9 7 13 13 H 1.48493 * 109.47443 * 210.00196 * 11 9 7 14 14 H 1.48500 * 109.46888 * 330.00019 * 11 9 7 15 15 C 1.46908 * 110.99802 * 61.83872 * 5 4 2 16 16 H 1.09000 * 109.35958 * 298.20832 * 15 5 4 17 17 C 1.50066 * 109.35893 * 57.93277 * 15 5 4 18 18 C 1.29443 * 124.07640 * 137.19814 * 17 15 5 19 19 C 1.50059 * 124.07665 * 359.79152 * 18 17 15 20 20 C 1.52875 * 110.23063 * 16.69164 * 19 18 17 21 21 C 1.53025 * 109.24484 * 178.55120 * 15 5 4 22 22 H 1.09002 * 109.46861 * 299.99877 * 1 2 3 23 23 H 1.09004 * 109.47234 * 59.99548 * 1 2 3 24 24 H 1.08992 * 109.47589 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46861 * 240.00123 * 2 1 3 26 26 H 1.09008 * 109.47046 * 65.81079 * 3 2 1 27 27 H 1.09001 * 109.47343 * 185.81138 * 3 2 1 28 28 H 1.09003 * 109.47527 * 305.81872 * 3 2 1 29 29 H 1.08997 * 109.47269 * 28.02765 * 4 2 1 30 30 H 1.08999 * 109.46516 * 268.02406 * 4 2 1 31 31 H 1.09006 * 109.46955 * 57.45825 * 6 5 4 32 32 H 1.08999 * 109.47521 * 177.45502 * 6 5 4 33 33 H 0.96994 * 119.99705 * 179.97438 * 10 9 7 34 34 H 1.08002 * 117.96183 * 317.17503 * 17 15 5 35 35 H 1.08008 * 117.96038 * 179.51048 * 18 17 15 36 36 H 1.09001 * 109.36075 * 137.08045 * 19 18 17 37 37 H 1.09001 * 109.35939 * 256.66164 * 19 18 17 38 38 H 1.08998 * 109.69957 * 191.10189 * 20 19 18 39 39 H 1.09001 * 109.43860 * 70.56197 * 20 19 18 40 40 H 1.09007 * 109.64033 * 310.11538 * 21 15 5 41 41 H 1.09002 * 109.64323 * 70.52987 * 21 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.3109 -1.3915 0.9431 6 6 3.1306 -2.4118 -0.0982 7 6 2.1897 -3.4780 0.4007 8 1 1.7233 -3.3763 1.3694 9 6 1.9245 -4.5834 -0.3795 10 7 2.4922 -4.7071 -1.5593 11 14 0.7587 -5.9054 0.2392 12 1 -0.6269 -5.5817 -0.1856 13 1 1.1557 -7.2197 -0.3265 14 1 0.8206 -5.9656 1.7217 15 6 4.3391 -0.4174 0.5533 16 1 4.0206 0.1022 -0.3504 17 6 4.5258 0.5787 1.6601 18 6 5.6788 1.0054 2.0650 19 6 6.9903 0.5604 1.4872 20 6 6.7699 -0.1123 0.1322 21 6 5.6527 -1.1529 0.2792 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.7642 1.9254 0.9375 27 1 3.1251 1.4441 -0.1041 28 1 1.5942 1.9855 -0.8333 29 1 1.3058 -1.4621 1.5662 30 1 2.1944 0.0027 2.0492 31 1 2.7135 -1.9485 -0.9924 32 1 4.0945 -2.8609 -0.3377 33 1 2.3059 -5.4849 -2.1080 34 1 3.6431 0.9637 2.1491 35 1 5.6980 1.7301 2.8656 36 1 7.6419 1.4251 1.3617 37 1 7.4623 -0.1493 2.1667 38 1 7.6887 -0.6038 -0.1878 39 1 6.4774 0.6382 -0.6021 40 1 5.8799 -1.8195 1.1112 41 1 5.5636 -1.7318 -0.6401 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218968767.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:11 Heat of formation + Delta-G solvation = -8.997927 kcal Electronic energy + Delta-G solvation = -18059.270883 eV Core-core repulsion = 15552.229929 eV Total energy + Delta-G solvation = -2507.040954 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.66162 -37.78627 -35.27468 -34.07978 -31.98436 -30.65496 -28.68056 -27.94986 -26.27358 -24.37534 -22.95737 -22.16363 -20.71761 -18.56393 -18.45717 -17.17735 -16.81107 -16.67456 -15.52635 -15.21966 -14.89101 -14.57834 -14.32170 -14.03086 -13.88252 -13.76823 -13.50972 -13.04195 -13.00001 -12.95745 -12.69340 -12.61411 -12.19502 -12.15396 -12.04638 -11.73104 -11.62081 -11.44856 -11.34454 -11.01374 -10.76228 -10.54743 -9.88610 -8.73961 -8.17365 -6.25183 1.38749 1.40033 1.48321 1.51741 2.40899 3.14941 3.46712 3.81258 3.96617 4.08052 4.11500 4.13488 4.29179 4.43493 4.51344 4.55343 4.65263 4.76700 4.78409 4.81537 4.87160 4.96239 4.99714 5.04455 5.09245 5.12760 5.19935 5.25543 5.30845 5.34781 5.43038 5.47246 5.53374 5.59090 5.72813 5.86755 6.10271 6.14357 6.48119 6.77849 6.91862 7.43127 8.93517 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022538 B = 0.008214 C = 0.006664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.047217 B = 3407.918403 C = 4200.641264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.133 4.133 3 C -0.142 4.142 4 C 0.069 3.931 5 N -0.537 5.537 6 C 0.207 3.793 7 C -0.515 4.515 8 H 0.058 0.942 9 C 0.002 3.998 10 N -0.934 5.934 11 Si 0.962 3.038 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.267 1.267 15 C 0.109 3.891 16 H 0.038 0.962 17 C -0.149 4.149 18 C -0.150 4.150 19 C -0.087 4.087 20 C -0.112 4.112 21 C -0.112 4.112 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.034 0.966 25 H 0.040 0.960 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.081 0.919 31 H -0.032 1.032 32 H 0.008 0.992 33 H 0.262 0.738 34 H 0.108 0.892 35 H 0.124 0.876 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.972 13.179 5.281 14.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.153 4.153 3 C -0.199 4.199 4 C -0.059 4.059 5 N -0.260 5.260 6 C 0.081 3.919 7 C -0.553 4.553 8 H 0.076 0.924 9 C -0.195 4.195 10 N -0.575 5.575 11 Si 0.787 3.213 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.191 1.191 15 C 0.001 3.999 16 H 0.056 0.944 17 C -0.168 4.168 18 C -0.169 4.169 19 C -0.124 4.124 20 C -0.150 4.150 21 C -0.150 4.150 22 H 0.089 0.911 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.099 0.901 31 H -0.015 1.015 32 H 0.026 0.974 33 H 0.071 0.929 34 H 0.126 0.874 35 H 0.142 0.858 36 H 0.111 0.889 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.147 12.817 5.577 14.580 hybrid contribution -1.038 -0.883 -0.980 1.679 sum 3.108 11.934 4.597 13.161 Atomic orbital electron populations 1.21701 0.94541 1.00809 1.02012 1.21713 0.96997 0.97220 0.99383 1.22083 1.01211 0.94443 1.02167 1.22214 0.90898 0.96551 0.96212 1.62373 1.07355 1.13036 1.43211 1.19407 0.95087 0.89302 0.88109 1.21460 1.26004 1.04971 1.02911 0.92350 1.25824 0.98108 1.00501 0.95083 1.70086 1.45291 1.30370 1.11733 0.85496 0.78920 0.78182 0.78735 1.19936 1.20813 1.19107 1.20561 0.92198 0.91647 0.95473 0.94413 1.22022 0.98603 0.97833 0.98310 1.22260 0.93964 1.00529 1.00160 1.20460 0.95526 1.00801 0.95620 1.21560 0.97755 0.97475 0.98206 1.21635 0.95008 0.98071 1.00329 0.91134 0.92538 0.94664 0.94170 0.91296 0.92338 0.92648 0.92612 0.90132 1.01492 0.97377 0.92919 0.87388 0.85797 0.88851 0.90692 0.90576 0.91888 0.92727 0.94427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 9.01 71.98 0.65 -3.64 16 2 C -0.13 -4.79 2.30 -10.80 -0.02 -4.82 16 3 C -0.14 -4.02 7.95 71.98 0.57 -3.44 16 4 C 0.07 2.70 4.74 86.30 0.41 3.11 16 5 N -0.54 -23.71 4.59 -881.02 -4.04 -27.75 16 6 C 0.21 11.19 4.22 85.56 0.36 11.55 16 7 C -0.52 -29.70 8.54 25.60 0.22 -29.48 16 8 H 0.06 3.33 6.73 -2.91 -0.02 3.31 16 9 C 0.00 0.14 5.46 84.65 0.46 0.60 16 10 N -0.93 -57.15 13.29 21.45 0.28 -56.86 16 11 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 14 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 15 C 0.11 4.02 1.61 43.98 0.07 4.09 16 16 H 0.04 1.47 5.30 -2.39 -0.01 1.46 16 17 C -0.15 -4.43 7.37 27.04 0.20 -4.23 16 18 C -0.15 -3.66 9.80 27.03 0.27 -3.39 16 19 C -0.09 -1.93 6.11 29.61 0.18 -1.75 16 20 C -0.11 -2.97 6.00 30.68 0.18 -2.79 16 21 C -0.11 -4.09 4.61 30.73 0.14 -3.95 16 22 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.03 1.29 8.11 -2.39 -0.02 1.27 16 25 H 0.04 1.78 5.47 -2.39 -0.01 1.77 16 26 H 0.07 1.66 7.98 -2.38 -0.02 1.64 16 27 H 0.06 1.71 4.41 -2.39 -0.01 1.70 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 2.42 6.14 -2.39 -0.01 2.41 16 30 H 0.08 2.69 5.58 -2.39 -0.01 2.68 16 31 H -0.03 -1.89 5.89 -2.38 -0.01 -1.90 16 32 H 0.01 0.48 6.13 -2.39 -0.01 0.47 16 33 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 34 H 0.11 3.04 5.67 -2.91 -0.02 3.02 16 35 H 0.12 2.39 8.06 -2.91 -0.02 2.36 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.06 1.62 8.12 -2.39 -0.02 1.60 16 40 H 0.05 2.13 8.13 -2.38 -0.02 2.11 16 41 H 0.04 1.55 6.83 -2.39 -0.02 1.54 16 Total: -1.00 -64.27 302.18 2.95 -61.32 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.99 Total: 14.10 kcal Atomic # 6 Polarization: -41.83 SS G_CDS: 3.69 Total: -38.14 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -3.76 Total: -84.62 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -64.27 2.95 -61.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218968767.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.320 kcal (2) G-P(sol) polarization free energy of solvation -64.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds