Wall clock time and date at job start Sun Mar 29 2020 22:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00235 * 2 1 4 4 H 1.48502 * 109.47257 * 269.72674 * 3 2 1 5 5 H 1.48493 * 109.47046 * 29.72680 * 3 2 1 6 6 H 1.48508 * 109.46954 * 149.72486 * 3 2 1 7 7 C 1.37879 * 119.99448 * 179.72837 * 2 1 3 8 8 H 1.08006 * 119.99999 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00532 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47293 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47004 * 180.02562 * 10 9 7 12 12 N 1.46899 * 109.47181 * 183.53572 * 11 10 9 13 13 C 1.45412 * 110.99449 * 295.15445 * 12 11 10 14 14 C 1.52873 * 110.41551 * 183.79467 * 13 12 11 15 15 C 1.52959 * 108.18726 * 60.81780 * 14 13 12 16 16 C 1.53067 * 109.56561 * 296.74796 * 15 14 13 17 17 H 1.09004 * 110.22070 * 285.71947 * 16 15 14 18 18 C 1.54543 * 107.33162 * 165.60767 * 16 15 14 19 19 C 1.53750 * 107.11069 * 242.16888 * 18 16 15 20 20 C 1.54331 * 105.93175 * 16.73015 * 19 18 16 21 21 C 1.42787 * 111.00094 * 161.83338 * 12 11 10 22 22 H 1.09005 * 105.71718 * 281.69887 * 21 12 11 23 23 H 0.97007 * 119.99928 * 0.27376 * 1 2 3 24 24 H 1.08998 * 109.47509 * 300.00592 * 9 7 2 25 25 H 1.09010 * 109.46658 * 60.00400 * 9 7 2 26 26 H 1.09001 * 109.47419 * 300.00192 * 10 9 7 27 27 H 1.08996 * 109.46816 * 60.00688 * 10 9 7 28 28 H 1.08999 * 109.46958 * 303.53046 * 11 10 9 29 29 H 1.08996 * 109.47375 * 63.53216 * 11 10 9 30 30 H 1.08997 * 109.31697 * 304.07942 * 13 12 11 31 31 H 1.08999 * 109.31335 * 63.69681 * 13 12 11 32 32 H 1.08993 * 109.72535 * 180.49584 * 14 13 12 33 33 H 1.09005 * 109.71676 * 301.14821 * 14 13 12 34 34 H 1.09000 * 109.45819 * 56.77568 * 15 14 13 35 35 H 1.09005 * 109.45592 * 176.72233 * 15 14 13 36 36 H 1.09001 * 109.90895 * 1.54058 * 18 16 15 37 37 H 1.09000 * 109.90451 * 122.61546 * 18 16 15 38 38 H 1.08997 * 110.15540 * 135.84887 * 19 18 16 39 39 H 1.08995 * 110.15849 * 257.61236 * 19 18 16 40 40 H 1.09005 * 110.50495 * 89.87465 * 20 19 18 41 41 H 1.08997 * 110.50703 * 212.55892 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5025 2.0431 -1.4001 5 1 1.4438 2.6543 0.6942 6 1 3.5438 1.4417 0.7059 7 6 2.0044 -1.1941 0.0057 8 1 3.0844 -1.1942 0.0052 9 6 1.2509 -2.4992 0.0124 10 6 2.2451 -3.6621 0.0172 11 6 1.4800 -4.9871 0.0234 12 7 2.4323 -6.1020 0.1134 13 6 3.2735 -6.1655 -1.0711 14 6 4.1941 -7.3842 -1.0065 15 6 3.3216 -8.6392 -0.9480 16 6 2.4904 -8.6261 0.3372 17 1 3.1203 -8.8596 1.1957 18 6 1.3829 -9.6925 0.1801 19 6 0.0344 -8.9564 0.2410 20 6 0.3543 -7.4656 0.0024 21 6 1.7799 -7.2992 0.5375 22 1 1.6516 -7.1996 1.6154 23 1 -0.4850 0.8401 -0.0040 24 1 0.6245 -2.5525 0.9028 25 1 0.6239 -2.5613 -0.8772 26 1 2.8711 -3.6086 -0.8735 27 1 2.8723 -3.6002 0.9064 28 1 0.8071 -5.0140 0.8805 29 1 0.9013 -5.0768 -0.8959 30 1 2.6432 -6.2366 -1.9575 31 1 3.8799 -5.2619 -1.1315 32 1 4.8251 -7.4160 -1.8947 33 1 4.8172 -7.3275 -0.1139 34 1 2.6557 -8.6590 -1.8108 35 1 3.9575 -9.5244 -0.9601 36 1 1.4873 -10.1973 -0.7803 37 1 1.4494 -10.4188 0.9901 38 1 -0.6314 -9.3272 -0.5384 39 1 -0.4227 -9.0904 1.2213 40 1 0.3165 -7.2325 -1.0618 41 1 -0.3381 -6.8329 0.5576 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227167071.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:10 Heat of formation + Delta-G solvation = -31.799893 kcal Electronic energy + Delta-G solvation = -17410.473930 eV Core-core repulsion = 14902.444209 eV Total energy + Delta-G solvation = -2508.029721 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.16119 -35.94671 -34.16816 -33.13797 -31.03282 -28.96750 -27.71836 -26.37950 -24.06014 -22.22746 -21.96110 -20.69065 -19.48777 -18.24533 -16.49101 -16.08476 -15.58171 -14.89574 -14.45016 -14.38467 -14.27985 -13.42502 -13.28843 -12.98085 -12.54477 -12.24831 -12.18200 -11.68620 -11.47292 -11.19781 -11.15878 -11.01640 -10.79257 -10.67197 -10.55501 -10.52388 -10.41868 -10.17540 -9.97301 -9.52028 -9.26445 -9.00141 -8.29691 -7.67880 -5.95170 -3.96848 3.35171 3.41150 3.45161 4.13224 4.48552 4.51673 4.60960 4.72970 5.03451 5.10369 5.15536 5.31517 5.40687 5.52226 5.54692 5.58784 5.63144 5.71072 5.81356 5.85374 5.87965 5.93489 5.94698 6.08232 6.09192 6.12730 6.22978 6.29021 6.33361 6.41293 6.49843 6.79313 6.89767 7.22211 7.56534 7.74240 7.83400 7.90974 8.05873 8.49702 9.10427 9.66847 11.16350 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.043337 B = 0.004748 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.940778 B = 5896.229764 C = 6384.423859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.106 4.106 11 C 0.070 3.930 12 N -0.554 5.554 13 C 0.071 3.929 14 C -0.122 4.122 15 C -0.114 4.114 16 C -0.082 4.082 17 H 0.077 0.923 18 C -0.120 4.120 19 C -0.120 4.120 20 C -0.153 4.153 21 C 0.109 3.891 22 H 0.057 0.943 23 H 0.259 0.741 24 H 0.015 0.985 25 H 0.013 0.987 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.029 0.971 30 H 0.024 0.976 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.754 -19.191 -0.953 19.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.056 4.056 12 N -0.277 5.277 13 C -0.056 4.056 14 C -0.160 4.160 15 C -0.152 4.152 16 C -0.101 4.101 17 H 0.095 0.905 18 C -0.158 4.158 19 C -0.159 4.159 20 C -0.192 4.192 21 C -0.001 4.001 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.031 0.969 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.902 -19.000 -0.608 19.406 hybrid contribution -0.212 0.789 -0.630 1.032 sum 3.689 -18.210 -1.238 18.622 Atomic orbital electron populations 1.69970 1.06058 1.26481 1.51169 1.25024 0.94831 0.99211 0.95449 0.86609 0.79891 0.83543 0.78047 1.20735 1.21266 1.19855 1.21261 0.93039 0.91068 1.50139 0.92710 1.19071 0.94058 0.91435 0.97018 1.21680 0.99182 0.92876 1.00684 1.22163 0.93399 0.90143 0.99870 1.58409 1.26527 1.04808 1.37958 1.21605 0.95063 0.98623 0.90299 1.21595 0.97827 0.94422 1.02106 1.21675 0.98233 0.97919 0.97354 1.21446 0.96421 0.93955 0.98267 0.90485 1.22322 0.94344 0.97549 1.01573 1.22035 0.96968 0.95388 1.01471 1.22770 0.98603 0.96273 1.01565 1.20473 0.90863 0.88790 0.99947 0.92492 0.93094 0.96649 0.96894 0.93576 0.92630 0.91399 0.95275 0.95802 0.90263 0.91617 0.91149 0.92252 0.92190 0.91800 0.91975 0.92043 0.91830 0.92102 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.42 13.29 55.43 0.74 -26.69 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.28 4.94 -26.73 -0.13 -2.41 16 11 C 0.07 1.28 3.93 -3.82 -0.02 1.26 16 12 N -0.55 -8.72 4.33 -231.70 -1.00 -9.72 16 13 C 0.07 1.03 5.23 -4.69 -0.02 1.01 16 14 C -0.12 -1.42 6.11 -26.82 -0.16 -1.58 16 15 C -0.11 -1.21 4.98 -26.72 -0.13 -1.34 16 16 C -0.08 -0.91 3.20 -90.36 -0.29 -1.20 16 17 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 18 C -0.12 -1.15 6.38 -25.53 -0.16 -1.31 16 19 C -0.12 -1.25 6.79 -25.64 -0.17 -1.42 16 20 C -0.15 -1.95 5.09 -25.94 -0.13 -2.08 16 21 C 0.11 1.48 2.41 -70.38 -0.17 1.31 16 22 H 0.06 0.82 8.05 -51.93 -0.42 0.40 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.01 0.36 8.14 -51.92 -0.42 -0.07 16 26 H 0.05 0.97 6.77 -51.93 -0.35 0.62 16 27 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 1.24 7.37 -51.93 -0.38 0.86 16 29 H 0.03 0.54 7.51 -51.93 -0.39 0.15 16 30 H 0.02 0.35 8.08 -51.93 -0.42 -0.07 16 31 H 0.08 1.22 6.65 -51.93 -0.35 0.88 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.65 7.84 -51.93 -0.41 0.24 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.58 7.41 -51.93 -0.38 0.19 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.83 7.82 -51.93 -0.41 0.43 16 41 H 0.07 0.95 7.53 -51.93 -0.39 0.56 16 LS Contribution 309.57 15.07 4.67 4.67 Total: -1.00 -29.93 309.57 -10.23 -40.17 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -7.67 Total: -4.32 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -1.95 Total: -21.10 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.27 Total: -36.41 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.93 -10.23 -40.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227167071.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.367 kcal (2) G-P(sol) polarization free energy of solvation -29.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds