Wall clock time and date at job start Sun Mar 29 2020 22:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00235 * 2 1 4 4 H 1.48502 * 109.47257 * 269.72674 * 3 2 1 5 5 H 1.48493 * 109.47046 * 29.72680 * 3 2 1 6 6 H 1.48508 * 109.46954 * 149.72486 * 3 2 1 7 7 C 1.37879 * 119.99448 * 179.72837 * 2 1 3 8 8 H 1.08006 * 119.99999 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00532 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47293 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47004 * 180.02562 * 10 9 7 12 12 N 1.46899 * 109.47181 * 183.53572 * 11 10 9 13 13 C 1.45412 * 110.99449 * 295.15445 * 12 11 10 14 14 C 1.52873 * 110.41551 * 183.79467 * 13 12 11 15 15 C 1.52959 * 108.18726 * 60.81780 * 14 13 12 16 16 C 1.53067 * 109.56561 * 296.74796 * 15 14 13 17 17 H 1.09004 * 110.22070 * 285.71947 * 16 15 14 18 18 C 1.54543 * 107.33162 * 165.60767 * 16 15 14 19 19 C 1.53750 * 107.11069 * 242.16888 * 18 16 15 20 20 C 1.54331 * 105.93175 * 16.73015 * 19 18 16 21 21 C 1.42787 * 111.00094 * 161.83338 * 12 11 10 22 22 H 1.09005 * 105.71718 * 281.69887 * 21 12 11 23 23 H 0.97007 * 119.99928 * 0.27376 * 1 2 3 24 24 H 1.08998 * 109.47509 * 300.00592 * 9 7 2 25 25 H 1.09010 * 109.46658 * 60.00400 * 9 7 2 26 26 H 1.09001 * 109.47419 * 300.00192 * 10 9 7 27 27 H 1.08996 * 109.46816 * 60.00688 * 10 9 7 28 28 H 1.08999 * 109.46958 * 303.53046 * 11 10 9 29 29 H 1.08996 * 109.47375 * 63.53216 * 11 10 9 30 30 H 1.08997 * 109.31697 * 304.07942 * 13 12 11 31 31 H 1.08999 * 109.31335 * 63.69681 * 13 12 11 32 32 H 1.08993 * 109.72535 * 180.49584 * 14 13 12 33 33 H 1.09005 * 109.71676 * 301.14821 * 14 13 12 34 34 H 1.09000 * 109.45819 * 56.77568 * 15 14 13 35 35 H 1.09005 * 109.45592 * 176.72233 * 15 14 13 36 36 H 1.09001 * 109.90895 * 1.54058 * 18 16 15 37 37 H 1.09000 * 109.90451 * 122.61546 * 18 16 15 38 38 H 1.08997 * 110.15540 * 135.84887 * 19 18 16 39 39 H 1.08995 * 110.15849 * 257.61236 * 19 18 16 40 40 H 1.09005 * 110.50495 * 89.87465 * 20 19 18 41 41 H 1.08997 * 110.50703 * 212.55892 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5025 2.0431 -1.4001 5 1 1.4438 2.6543 0.6942 6 1 3.5438 1.4417 0.7059 7 6 2.0044 -1.1941 0.0057 8 1 3.0844 -1.1942 0.0052 9 6 1.2509 -2.4992 0.0124 10 6 2.2451 -3.6621 0.0172 11 6 1.4800 -4.9871 0.0234 12 7 2.4323 -6.1020 0.1134 13 6 3.2735 -6.1655 -1.0711 14 6 4.1941 -7.3842 -1.0065 15 6 3.3216 -8.6392 -0.9480 16 6 2.4904 -8.6261 0.3372 17 1 3.1203 -8.8596 1.1957 18 6 1.3829 -9.6925 0.1801 19 6 0.0344 -8.9564 0.2410 20 6 0.3543 -7.4656 0.0024 21 6 1.7799 -7.2992 0.5375 22 1 1.6516 -7.1996 1.6154 23 1 -0.4850 0.8401 -0.0040 24 1 0.6245 -2.5525 0.9028 25 1 0.6239 -2.5613 -0.8772 26 1 2.8711 -3.6086 -0.8735 27 1 2.8723 -3.6002 0.9064 28 1 0.8071 -5.0140 0.8805 29 1 0.9013 -5.0768 -0.8959 30 1 2.6432 -6.2366 -1.9575 31 1 3.8799 -5.2619 -1.1315 32 1 4.8251 -7.4160 -1.8947 33 1 4.8172 -7.3275 -0.1139 34 1 2.6557 -8.6590 -1.8108 35 1 3.9575 -9.5244 -0.9601 36 1 1.4873 -10.1973 -0.7803 37 1 1.4494 -10.4188 0.9901 38 1 -0.6314 -9.3272 -0.5384 39 1 -0.4227 -9.0904 1.2213 40 1 0.3165 -7.2325 -1.0618 41 1 -0.3381 -6.8329 0.5576 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227167071.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:10 Heat of formation + Delta-G solvation = -48.402859 kcal Electronic energy + Delta-G solvation = -17411.193888 eV Core-core repulsion = 14902.444209 eV Total energy + Delta-G solvation = -2508.749680 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.22530 -37.24678 -35.62735 -34.74378 -32.87355 -29.93332 -29.02943 -27.92142 -25.60206 -23.73742 -22.99886 -22.09630 -20.80093 -19.29545 -18.46740 -17.39775 -16.76764 -16.41077 -16.11719 -15.70331 -15.42317 -14.59103 -14.51461 -14.29636 -13.92015 -13.68606 -13.51883 -13.32460 -12.90087 -12.56955 -12.49655 -12.41598 -12.38053 -12.05675 -11.94158 -11.64389 -11.46813 -11.37593 -11.32659 -11.23154 -10.96372 -10.91845 -10.55183 -8.95598 -8.20198 -6.31428 1.39710 1.41546 1.52926 2.40958 2.92154 3.12795 3.56601 3.69616 3.79410 4.06296 4.12500 4.22661 4.25334 4.34779 4.51135 4.57696 4.59995 4.67583 4.68970 4.71315 4.82199 4.89750 4.94272 4.98978 5.02734 5.08720 5.09127 5.17329 5.20598 5.23609 5.28992 5.38669 5.41852 5.51854 5.56716 5.73859 5.85026 6.18139 6.30127 6.64722 6.85112 7.37770 8.91884 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.043337 B = 0.004748 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.940778 B = 5896.229764 C = 6384.423859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.090 4.090 11 C 0.085 3.915 12 N -0.559 5.559 13 C 0.068 3.932 14 C -0.116 4.116 15 C -0.111 4.111 16 C -0.082 4.082 17 H 0.083 0.917 18 C -0.113 4.113 19 C -0.117 4.117 20 C -0.153 4.153 21 C 0.103 3.897 22 H 0.046 0.954 23 H 0.264 0.736 24 H -0.009 1.009 25 H -0.011 1.011 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.023 0.977 30 H 0.018 0.982 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.138 -20.485 -1.114 21.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.128 4.128 11 C -0.042 4.042 12 N -0.282 5.282 13 C -0.060 4.060 14 C -0.154 4.154 15 C -0.148 4.148 16 C -0.100 4.100 17 H 0.102 0.898 18 C -0.151 4.151 19 C -0.155 4.155 20 C -0.193 4.193 21 C -0.006 4.006 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.009 0.991 25 H 0.007 0.993 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.041 0.959 30 H 0.036 0.964 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.295 -20.318 -0.771 21.011 hybrid contribution -0.680 1.203 -0.571 1.495 sum 4.616 -19.115 -1.342 19.710 Atomic orbital electron populations 1.70103 1.07841 1.27780 1.51727 1.25997 0.95785 1.03405 0.94652 0.85427 0.78653 0.78289 0.78561 1.19656 1.20611 1.18757 1.21676 0.93491 0.92354 1.50527 0.92313 1.18963 0.94378 0.93156 0.94607 1.21422 0.98000 0.92843 1.00505 1.21837 0.93239 0.89842 0.99300 1.58306 1.26071 1.05146 1.38705 1.21671 0.95092 0.99748 0.89451 1.21577 0.97459 0.93407 1.02913 1.21674 0.98204 0.98175 0.96771 1.21469 0.97023 0.92572 0.98977 0.89819 1.22300 0.92778 0.97142 1.02909 1.22030 0.97944 0.93300 1.02203 1.22723 0.97928 0.98235 1.00377 1.20595 0.91658 0.89235 0.99107 0.93626 0.92755 0.99082 0.99283 0.93268 0.93057 0.92021 0.95903 0.96418 0.91668 0.89841 0.91272 0.92538 0.89774 0.90693 0.90276 0.91100 0.91168 0.93336 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.18 13.29 21.45 0.28 -57.90 16 2 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 3 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.54 -32.02 9.11 25.60 0.23 -31.79 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.47 4.97 29.85 0.15 1.62 16 10 C -0.09 -3.96 4.94 30.59 0.15 -3.81 16 11 C 0.08 3.19 3.93 86.30 0.34 3.53 16 12 N -0.56 -17.65 4.33 -886.98 -3.84 -21.49 16 13 C 0.07 1.93 5.23 86.54 0.45 2.38 16 14 C -0.12 -2.47 6.11 30.54 0.19 -2.28 16 15 C -0.11 -2.04 4.98 30.60 0.15 -1.89 16 16 C -0.08 -1.63 3.20 -10.63 -0.03 -1.67 16 17 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 18 C -0.11 -1.84 6.38 31.37 0.20 -1.64 16 19 C -0.12 -2.20 6.79 31.30 0.21 -1.99 16 20 C -0.15 -3.90 5.09 31.11 0.16 -3.74 16 21 C 0.10 2.75 2.41 45.35 0.11 2.85 16 22 H 0.05 1.30 8.05 -2.38 -0.02 1.29 16 23 H 0.26 15.36 8.31 -92.70 -0.77 14.58 16 24 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 25 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 26 H 0.05 2.12 6.77 -2.39 -0.02 2.11 16 27 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.06 2.36 7.37 -2.39 -0.02 2.35 16 29 H 0.02 0.88 7.51 -2.39 -0.02 0.86 16 30 H 0.02 0.52 8.08 -2.39 -0.02 0.50 16 31 H 0.06 2.01 6.65 -2.39 -0.02 2.00 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.06 1.09 7.84 -2.39 -0.02 1.07 16 35 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.07 1.08 7.41 -2.39 -0.02 1.06 16 37 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.05 1.34 7.82 -2.38 -0.02 1.32 16 41 H 0.06 1.56 7.53 -2.39 -0.02 1.55 16 Total: -1.00 -64.84 309.57 2.20 -62.64 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: 0.95 Total: 7.53 kcal Atomic # 6 Polarization: -40.79 SS G_CDS: 2.77 Total: -38.02 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -3.55 Total: -79.39 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -64.84 2.20 -62.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227167071.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.234 kcal (2) G-P(sol) polarization free energy of solvation -64.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds