Wall clock time and date at job start Sun Mar 29 2020 22:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47434 * 2 1 4 4 H 1.08991 * 109.47545 * 180.22003 * 3 2 1 5 5 C 1.50705 * 109.47278 * 60.21428 * 3 2 1 6 6 H 1.07996 * 120.00326 * 245.59110 * 5 3 2 7 7 C 1.37881 * 119.99600 * 65.58768 * 5 3 2 8 8 N 1.31512 * 119.99583 * 193.45728 * 7 5 3 9 9 Si 1.86798 * 119.99900 * 13.44967 * 7 5 3 10 10 H 1.48507 * 109.46889 * 85.91206 * 9 7 5 11 11 H 1.48505 * 109.47084 * 205.90528 * 9 7 5 12 12 H 1.48493 * 109.47544 * 325.91200 * 9 7 5 13 13 N 1.46901 * 109.46830 * 300.22025 * 3 2 1 14 14 C 1.45417 * 111.00089 * 305.60565 * 13 3 2 15 15 C 1.51975 * 111.01629 * 184.04506 * 14 13 3 16 16 C 1.52972 * 108.53521 * 59.82769 * 15 14 13 17 17 C 1.53062 * 109.49226 * 297.33224 * 16 15 14 18 18 H 1.09007 * 111.14937 * 286.04136 * 17 16 15 19 19 C 1.54361 * 107.37573 * 165.15706 * 17 16 15 20 20 C 1.54151 * 104.32549 * 272.33564 * 19 17 16 21 21 C 1.54004 * 105.81603 * 330.12831 * 20 19 17 22 22 C 1.42984 * 111.00046 * 172.59855 * 13 3 2 23 23 H 1.09003 * 105.30009 * 281.71778 * 22 13 3 24 24 H 1.08996 * 109.47044 * 54.46813 * 1 2 3 25 25 H 1.09002 * 109.46833 * 174.46778 * 1 2 3 26 26 H 1.09000 * 109.47025 * 294.46743 * 1 2 3 27 27 H 1.09010 * 109.47139 * 119.99769 * 2 1 3 28 28 H 1.09000 * 109.47221 * 239.99338 * 2 1 3 29 29 H 0.97001 * 119.99783 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.26823 * 303.59514 * 14 13 3 31 31 H 1.09002 * 109.26559 * 63.04584 * 14 13 3 32 32 H 1.08999 * 109.36207 * 300.19022 * 15 14 13 33 33 H 1.09002 * 109.81886 * 179.73492 * 15 14 13 34 34 H 1.08997 * 109.47414 * 177.32445 * 16 15 14 35 35 H 1.09005 * 109.46347 * 57.33129 * 16 15 14 36 36 H 1.09001 * 110.83713 * 153.49790 * 19 17 16 37 37 H 1.09004 * 110.34497 * 30.92827 * 19 17 16 38 38 H 1.08999 * 110.18175 * 211.04449 * 20 19 17 39 39 H 1.08999 * 110.24718 * 89.25383 * 20 19 17 40 40 H 1.08997 * 110.05232 * 257.72870 * 21 20 19 41 41 H 1.09001 * 110.09032 * 136.27810 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1300 1.4425 -0.0039 5 6 1.5421 2.1514 1.2331 6 1 0.8487 2.9741 1.1401 7 6 1.9719 1.7496 2.4801 8 7 1.3518 2.1765 3.5584 9 14 3.4348 0.5988 2.6378 10 1 4.6905 1.3917 2.6386 11 1 3.3302 -0.1636 3.9079 12 1 3.4470 -0.3463 1.4926 13 7 1.5461 2.1364 -1.1968 14 6 1.8966 1.4063 -2.4046 15 6 1.4732 2.1725 -3.6469 16 6 2.1852 3.5264 -3.6494 17 6 1.7440 4.3378 -2.4288 18 1 0.7308 4.7194 -2.5555 19 6 2.7424 5.5035 -2.2647 20 6 3.8734 4.9177 -1.3965 21 6 3.2096 3.8501 -0.5069 22 6 1.8591 3.5307 -1.1465 23 1 1.1226 3.9667 -0.4715 24 1 -0.3633 0.5972 -0.8363 25 1 -0.3633 -1.0229 -0.0991 26 1 -0.3633 0.4256 0.9354 27 1 1.8934 -0.5138 0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.6543 1.8942 4.4357 30 1 2.9768 1.2646 -2.4384 31 1 1.4071 0.4325 -2.3909 32 1 0.3941 2.3251 -3.6271 33 1 1.7490 1.6108 -4.5394 34 1 1.9291 4.0700 -4.5588 35 1 3.2633 3.3699 -3.6111 36 1 2.2733 6.3475 -1.7591 37 1 3.1293 5.8107 -3.2364 38 1 4.3166 5.6990 -0.7790 39 1 4.6353 4.4605 -2.0278 40 1 3.0633 4.2409 0.5000 41 1 3.8285 2.9534 -0.4731 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227167106.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:21 Heat of formation + Delta-G solvation = -6.367214 kcal Electronic energy + Delta-G solvation = -18770.921844 eV Core-core repulsion = 16263.994967 eV Total energy + Delta-G solvation = -2506.926877 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.83519 -35.96669 -33.92223 -32.02727 -31.15794 -28.53703 -26.96985 -26.74146 -23.70856 -22.87566 -21.29040 -20.37280 -18.96268 -17.73024 -16.55006 -15.69038 -15.19046 -14.79831 -14.28499 -13.85501 -13.42237 -13.10922 -12.78584 -12.72193 -12.49671 -12.15199 -11.80517 -11.43669 -11.22472 -10.99716 -10.84989 -10.73682 -10.64771 -10.45192 -10.22763 -10.00795 -9.95622 -9.80825 -9.69797 -9.42765 -9.19222 -8.84212 -8.37818 -6.91542 -6.03778 -3.96033 3.29003 3.37799 3.40713 4.45375 4.76212 4.99401 5.11968 5.17693 5.28744 5.41118 5.54381 5.57863 5.88911 5.99166 6.02607 6.04347 6.09449 6.18349 6.20026 6.25007 6.30070 6.33601 6.38655 6.40168 6.50225 6.53285 6.57811 6.68961 6.75869 6.85321 6.98448 7.11411 7.17283 7.25160 7.33783 7.54455 7.79331 8.12545 8.50277 8.79304 9.07222 9.62225 11.09036 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025498 B = 0.010598 C = 0.008750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.862082 B = 2641.299478 C = 3199.071422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 C 0.200 3.800 4 H -0.005 1.005 5 C -0.494 4.494 6 H 0.080 0.920 7 C 0.076 3.924 8 N -0.895 5.895 9 Si 0.852 3.148 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.253 1.253 13 N -0.536 5.536 14 C 0.069 3.931 15 C -0.119 4.119 16 C -0.110 4.110 17 C -0.084 4.084 18 H 0.073 0.927 19 C -0.118 4.118 20 C -0.124 4.124 21 C -0.138 4.138 22 C 0.120 3.880 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.018 0.982 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.028 0.972 29 H 0.262 0.738 30 H 0.010 0.990 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.556 1.701 -12.220 12.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.093 3.907 4 H 0.013 0.987 5 C -0.532 4.532 6 H 0.098 0.902 7 C -0.126 4.126 8 N -0.533 5.533 9 Si 0.680 3.320 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.177 1.177 13 N -0.259 5.259 14 C -0.059 4.059 15 C -0.157 4.157 16 C -0.148 4.148 17 C -0.103 4.103 18 H 0.091 0.909 19 C -0.156 4.156 20 C -0.162 4.162 21 C -0.177 4.177 22 C 0.011 3.989 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.037 0.963 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.029 0.971 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.091 1.683 -12.004 12.300 hybrid contribution 1.769 -0.621 0.328 1.903 sum 3.860 1.063 -11.675 12.343 Atomic orbital electron populations 1.21482 0.95715 0.97800 1.03206 1.22026 0.97144 0.97994 0.98876 1.19558 0.92260 0.90721 0.88156 0.98733 1.20853 1.27167 1.17361 0.87851 0.90157 1.24814 0.96242 0.95664 0.95859 1.69941 1.39325 1.46093 0.97973 0.87446 0.84491 0.82174 0.77907 1.20750 1.21596 1.17722 1.58449 1.64646 1.00760 1.02051 1.21416 0.97050 0.97421 0.90012 1.21405 1.00997 0.96076 0.97235 1.21569 0.99915 0.96075 0.97260 1.21549 0.98663 0.95146 0.94960 0.90895 1.22317 0.96480 0.97610 0.99157 1.22181 0.97448 0.98598 0.97995 1.22456 0.97695 0.97816 0.99760 1.20187 0.96271 0.87896 0.94563 0.91598 0.92631 0.96284 0.91592 0.92553 0.95380 0.92852 0.97143 0.91143 0.91455 0.92385 0.92800 0.92475 0.91931 0.92304 0.92568 0.93019 0.90513 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.35 37.16 0.35 -2.25 16 2 C -0.12 -2.67 4.58 -26.73 -0.12 -2.79 16 3 C 0.20 4.58 0.88 -68.86 -0.06 4.52 16 4 H 0.00 -0.11 5.01 -51.93 -0.26 -0.37 16 5 C -0.49 -13.10 6.13 -34.44 -0.21 -13.31 16 6 H 0.08 2.36 6.68 -52.49 -0.35 2.01 16 7 C 0.08 2.11 5.38 -17.82 -0.10 2.01 16 8 N -0.90 -26.63 13.96 55.43 0.77 -25.85 16 9 Si 0.85 20.93 25.91 -169.99 -4.40 16.53 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.25 -5.88 5.27 56.52 0.30 -5.58 16 13 N -0.54 -10.83 3.42 -225.72 -0.77 -11.60 16 14 C 0.07 1.20 4.81 -5.15 -0.02 1.17 16 15 C -0.12 -1.72 6.07 -27.27 -0.17 -1.88 16 16 C -0.11 -1.54 5.04 -26.71 -0.13 -1.68 16 17 C -0.08 -1.31 3.18 -90.41 -0.29 -1.59 16 18 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 19 C -0.12 -1.65 6.24 -25.42 -0.16 -1.81 16 20 C -0.12 -1.93 6.48 -25.61 -0.17 -2.10 16 21 C -0.14 -2.67 5.09 -26.31 -0.13 -2.80 16 22 C 0.12 2.31 2.07 -70.42 -0.15 2.17 16 23 H 0.07 1.45 6.59 -51.93 -0.34 1.11 16 24 H 0.05 1.13 7.22 -51.93 -0.37 0.75 16 25 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 1.55 7.43 -51.93 -0.39 1.16 16 27 H 0.06 1.30 4.64 -51.92 -0.24 1.06 16 28 H 0.03 0.55 6.42 -51.93 -0.33 0.22 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 31 H 0.07 1.22 6.13 -51.93 -0.32 0.90 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.82 7.63 -51.93 -0.40 0.42 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.72 7.83 -51.93 -0.41 0.31 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.76 8.03 -51.93 -0.42 0.35 16 40 H 0.08 1.66 7.73 -51.93 -0.40 1.26 16 41 H 0.06 1.22 6.06 -51.93 -0.31 0.91 16 LS Contribution 288.90 15.07 4.35 4.35 Total: -1.00 -27.80 288.90 -8.57 -36.37 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.16 Total: 0.54 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -1.36 Total: -20.35 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.00 Total: -37.45 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.40 Total: 16.53 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.80 -8.57 -36.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227167106.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.006 kcal (2) G-P(sol) polarization free energy of solvation -27.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds