Wall clock time and date at job start Sun Mar 29 2020 21:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47247 * 89.99769 * 8 6 4 10 10 H 1.48496 * 109.47178 * 209.99766 * 8 6 4 11 11 H 1.48504 * 109.47095 * 329.99574 * 8 6 4 12 12 N 1.46898 * 109.47006 * 239.99936 * 2 1 3 13 13 C 1.46906 * 110.99628 * 183.95648 * 12 2 1 14 14 C 1.46898 * 111.00015 * 60.00191 * 12 2 1 15 15 C 1.53001 * 109.47042 * 189.99949 * 14 12 2 16 16 C 1.50695 * 109.47312 * 180.02562 * 15 14 12 17 17 C 1.39870 * 126.03730 * 269.69203 * 16 15 14 18 18 N 1.30839 * 108.19921 * 179.81434 * 17 16 15 19 19 N 1.40081 * 108.20664 * 0.44042 * 18 17 16 20 20 C 1.46499 * 126.03743 * 179.69427 * 19 18 17 21 21 C 1.34941 * 107.92543 * 359.71648 * 19 18 17 22 22 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 25 25 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.46760 * 60.00056 * 13 12 2 27 27 H 1.09001 * 109.46820 * 179.97438 * 13 12 2 28 28 H 1.08998 * 109.47231 * 299.99619 * 13 12 2 29 29 H 1.08997 * 109.47383 * 309.99674 * 14 12 2 30 30 H 1.09004 * 109.47083 * 70.00126 * 14 12 2 31 31 H 1.09009 * 109.47203 * 300.00266 * 15 14 12 32 32 H 1.09000 * 109.47231 * 59.99698 * 15 14 12 33 33 H 1.08002 * 125.90095 * 359.97438 * 17 16 15 34 34 H 1.08999 * 109.47330 * 270.02534 * 20 19 18 35 35 H 1.09006 * 109.46898 * 30.02773 * 20 19 18 36 36 H 1.09003 * 109.47110 * 150.02266 * 20 19 18 37 37 H 1.08008 * 126.12781 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.6303 -0.5440 4.4120 10 1 1.3443 -0.9489 5.1123 11 1 2.4878 -2.5653 3.7123 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7946 -1.1869 14 6 1.5487 -0.0264 -2.4210 15 6 1.8627 -0.9043 -3.6341 16 6 1.3801 -0.2208 -4.8874 17 6 0.1147 -0.3615 -5.4663 18 7 0.0695 0.3887 -6.5373 19 7 1.3101 1.0236 -6.6795 20 6 1.6873 1.9478 -7.7518 21 6 2.0964 0.6332 -5.6548 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7094 1.1619 3.4844 26 1 3.8029 -1.3532 -0.3066 27 1 3.8210 -1.3117 -2.0858 28 1 3.9188 0.2051 -1.1591 29 1 0.4723 0.1324 -2.3564 30 1 2.0520 0.9346 -2.5280 31 1 2.9392 -1.0632 -3.6988 32 1 1.3595 -1.8653 -3.5271 33 1 -0.6876 -0.9804 -5.0923 34 1 2.1207 1.3866 -8.5796 35 1 0.8029 2.4823 -8.0987 36 1 2.4190 2.6624 -7.3748 37 1 3.1151 0.9459 -5.4788 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229960183.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:01 Heat of formation + Delta-G solvation = 83.260457 kcal Electronic energy + Delta-G solvation = -16687.838894 eV Core-core repulsion = 14081.258221 eV Total energy + Delta-G solvation = -2606.580673 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.09443 -37.13813 -33.88965 -32.84094 -31.51962 -29.21432 -28.43664 -26.57459 -25.04082 -24.07292 -21.82495 -21.01269 -19.88343 -19.16188 -16.75009 -16.19752 -15.43301 -15.19411 -14.51571 -14.23137 -13.98263 -13.45307 -13.31466 -12.91453 -12.76946 -12.51374 -12.18944 -11.94624 -11.66906 -11.10922 -11.01678 -10.88150 -10.64314 -10.52862 -10.07686 -10.00478 -9.97330 -9.71269 -9.35674 -8.79648 -8.37530 -8.19470 -7.07257 -5.96229 -4.00510 1.93839 2.55120 2.92203 3.33216 3.39857 3.44088 4.44416 4.48964 4.88423 4.96599 5.08494 5.18474 5.22226 5.35504 5.52186 5.67680 5.87416 5.97534 6.11734 6.19179 6.28495 6.46119 6.64756 6.69537 6.76455 6.85811 6.95565 7.06866 7.13389 7.24380 7.60219 7.75668 7.81571 7.88594 8.29334 8.39764 8.68913 9.06587 9.64367 11.10627 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.053692 B = 0.004538 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.372621 B = 6168.632118 C = 6327.321457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.212 3.788 3 H -0.004 1.004 4 C -0.502 4.502 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.539 5.539 13 C 0.037 3.963 14 C 0.058 3.942 15 C -0.038 4.038 16 C -0.220 4.220 17 C 0.054 3.946 18 N -0.305 5.305 19 N -0.384 5.384 20 C 0.105 3.895 21 C 0.048 3.952 22 H 0.009 0.991 23 H 0.034 0.966 24 H 0.083 0.917 25 H 0.259 0.741 26 H 0.073 0.927 27 H 0.044 0.956 28 H 0.008 0.992 29 H 0.073 0.927 30 H 0.015 0.985 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.183 0.817 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.837 0.776 -16.396 16.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.106 3.894 3 H 0.013 0.987 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.263 5.263 13 C -0.112 4.112 14 C -0.071 4.071 15 C -0.077 4.077 16 C -0.232 4.232 17 C -0.132 4.132 18 N -0.126 5.126 19 N -0.167 5.167 20 C -0.037 4.037 21 C -0.097 4.097 22 H 0.028 0.972 23 H 0.053 0.947 24 H 0.102 0.898 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.063 0.937 28 H 0.027 0.973 29 H 0.091 0.909 30 H 0.034 0.966 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.200 0.800 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.894 0.930 -17.343 17.471 hybrid contribution 1.175 0.300 1.531 1.953 sum 3.069 1.230 -15.813 16.155 Atomic orbital electron populations 1.21844 0.97783 0.99627 0.99814 1.19230 0.92322 0.91877 0.86010 0.98672 1.21185 1.30842 1.12212 0.89817 0.91855 1.24938 0.95254 0.95114 0.99004 1.69897 1.37047 1.23126 1.23308 0.86538 0.78399 0.80110 0.82600 1.20870 1.21309 1.19825 1.62120 1.09041 1.52843 1.02340 1.22228 0.89122 0.98870 1.00966 1.22097 1.00857 0.94164 0.89936 1.19949 1.00335 0.98304 0.89102 1.20260 0.95129 1.06116 1.01692 1.23858 0.97894 0.98403 0.93028 1.77294 1.01059 1.13161 1.21102 1.48393 1.10003 1.36890 1.21373 1.21777 1.01869 0.91618 0.88434 1.22320 0.98011 0.99198 0.90167 0.97229 0.94662 0.89817 0.93065 0.90855 0.93704 0.97320 0.90864 0.96634 0.91865 0.90606 0.80004 0.91102 0.89552 0.89699 0.81264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 8.76 37.16 0.33 -2.99 16 2 C 0.21 5.45 2.06 -68.86 -0.14 5.31 16 3 H 0.00 -0.12 8.14 -51.93 -0.42 -0.55 16 4 C -0.50 -13.88 7.93 -34.44 -0.27 -14.15 16 5 H 0.06 1.74 6.39 -52.49 -0.34 1.40 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.81 11.32 55.43 0.63 -25.19 16 8 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 12 N -0.54 -11.73 4.62 -236.28 -1.09 -12.82 16 13 C 0.04 0.72 9.05 60.07 0.54 1.27 16 14 C 0.06 1.08 4.76 -3.82 -0.02 1.06 16 15 C -0.04 -0.57 5.63 -27.88 -0.16 -0.73 16 16 C -0.22 -3.11 5.35 -105.06 -0.56 -3.67 16 17 C 0.05 0.77 11.96 -17.36 -0.21 0.56 16 18 N -0.30 -4.48 12.58 30.63 0.39 -4.09 16 19 N -0.38 -4.75 4.01 -68.16 -0.27 -5.03 16 20 C 0.10 0.79 11.47 59.85 0.69 1.48 16 21 C 0.05 0.60 11.40 -17.23 -0.20 0.40 16 22 H 0.01 0.20 6.20 -51.93 -0.32 -0.12 16 23 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.08 2.28 6.07 -51.93 -0.32 1.97 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.07 1.54 6.23 -51.93 -0.32 1.21 16 27 H 0.04 0.74 6.30 -51.93 -0.33 0.41 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.07 1.43 5.83 -51.93 -0.30 1.12 16 30 H 0.02 0.30 8.12 -51.93 -0.42 -0.13 16 31 H 0.06 0.90 6.47 -51.92 -0.34 0.56 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.18 2.18 8.06 -52.49 -0.42 1.75 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.17 1.63 8.06 -52.48 -0.42 1.20 16 LS Contribution 300.11 15.07 4.52 4.52 Total: -1.00 -31.57 300.11 -6.57 -38.15 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -5.62 Total: -2.01 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -0.10 Total: -9.94 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -0.35 Total: -47.12 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.57 -6.57 -38.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229960183.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.406 kcal (2) G-P(sol) polarization free energy of solvation -31.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds