Wall clock time and date at job start Sun Mar 29 2020 21:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47247 * 89.99769 * 8 6 4 10 10 H 1.48496 * 109.47178 * 209.99766 * 8 6 4 11 11 H 1.48504 * 109.47095 * 329.99574 * 8 6 4 12 12 N 1.46898 * 109.47006 * 239.99936 * 2 1 3 13 13 C 1.46906 * 110.99628 * 183.95648 * 12 2 1 14 14 C 1.46898 * 111.00015 * 60.00191 * 12 2 1 15 15 C 1.53001 * 109.47042 * 189.99949 * 14 12 2 16 16 C 1.50695 * 109.47312 * 180.02562 * 15 14 12 17 17 C 1.39870 * 126.03730 * 269.69203 * 16 15 14 18 18 N 1.30839 * 108.19921 * 179.81434 * 17 16 15 19 19 N 1.40081 * 108.20664 * 0.44042 * 18 17 16 20 20 C 1.46499 * 126.03743 * 179.69427 * 19 18 17 21 21 C 1.34941 * 107.92543 * 359.71648 * 19 18 17 22 22 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 25 25 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.46760 * 60.00056 * 13 12 2 27 27 H 1.09001 * 109.46820 * 179.97438 * 13 12 2 28 28 H 1.08998 * 109.47231 * 299.99619 * 13 12 2 29 29 H 1.08997 * 109.47383 * 309.99674 * 14 12 2 30 30 H 1.09004 * 109.47083 * 70.00126 * 14 12 2 31 31 H 1.09009 * 109.47203 * 300.00266 * 15 14 12 32 32 H 1.09000 * 109.47231 * 59.99698 * 15 14 12 33 33 H 1.08002 * 125.90095 * 359.97438 * 17 16 15 34 34 H 1.08999 * 109.47330 * 270.02534 * 20 19 18 35 35 H 1.09006 * 109.46898 * 30.02773 * 20 19 18 36 36 H 1.09003 * 109.47110 * 150.02266 * 20 19 18 37 37 H 1.08008 * 126.12781 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.6303 -0.5440 4.4120 10 1 1.3443 -0.9489 5.1123 11 1 2.4878 -2.5653 3.7123 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7946 -1.1869 14 6 1.5487 -0.0264 -2.4210 15 6 1.8627 -0.9043 -3.6341 16 6 1.3801 -0.2208 -4.8874 17 6 0.1147 -0.3615 -5.4663 18 7 0.0695 0.3887 -6.5373 19 7 1.3101 1.0236 -6.6795 20 6 1.6873 1.9478 -7.7518 21 6 2.0964 0.6332 -5.6548 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7094 1.1619 3.4844 26 1 3.8029 -1.3532 -0.3066 27 1 3.8210 -1.3117 -2.0858 28 1 3.9188 0.2051 -1.1591 29 1 0.4723 0.1324 -2.3564 30 1 2.0520 0.9346 -2.5280 31 1 2.9392 -1.0632 -3.6988 32 1 1.3595 -1.8653 -3.5271 33 1 -0.6876 -0.9804 -5.0923 34 1 2.1207 1.3866 -8.5796 35 1 0.8029 2.4823 -8.0987 36 1 2.4190 2.6624 -7.3748 37 1 3.1151 0.9459 -5.4788 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229960183.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:01 Heat of formation + Delta-G solvation = 62.597746 kcal Electronic energy + Delta-G solvation = -16688.734896 eV Core-core repulsion = 14081.258221 eV Total energy + Delta-G solvation = -2607.476676 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.07277 -38.85730 -35.34384 -34.27935 -32.85107 -31.01185 -29.65653 -27.86198 -26.70461 -25.70455 -23.38968 -21.95696 -21.15980 -20.79842 -18.32478 -17.68143 -16.98275 -16.31687 -16.04119 -15.68300 -15.24411 -15.11158 -14.70715 -14.09743 -13.87201 -13.73485 -13.58359 -13.30155 -13.03779 -12.90082 -12.70911 -12.51586 -12.42636 -12.11973 -11.98119 -11.89228 -11.50993 -11.27539 -10.80018 -10.48529 -10.31896 -9.24014 -8.85285 -8.08125 -6.20099 0.97928 1.44222 1.45587 1.56405 1.74518 1.86556 2.45290 3.19982 3.47697 3.74439 4.03548 4.26366 4.38518 4.45607 4.51788 4.56248 4.68805 4.70004 4.79385 4.82079 4.82936 4.95148 5.07044 5.08895 5.16275 5.25049 5.38872 5.47950 5.55682 5.73220 5.78239 5.84984 6.19545 6.29576 6.46823 6.76455 6.81872 6.96176 7.49342 8.98061 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.053692 B = 0.004538 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.372621 B = 6168.632118 C = 6327.321457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.215 3.785 3 H -0.042 1.042 4 C -0.518 4.518 5 H 0.062 0.938 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.267 1.267 12 N -0.545 5.545 13 C 0.039 3.961 14 C 0.063 3.937 15 C -0.020 4.020 16 C -0.246 4.246 17 C 0.042 3.958 18 N -0.335 5.335 19 N -0.383 5.383 20 C 0.094 3.906 21 C 0.058 3.942 22 H 0.027 0.973 23 H 0.032 0.968 24 H 0.057 0.943 25 H 0.261 0.739 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.003 0.997 29 H 0.059 0.941 30 H 0.010 0.990 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.192 0.808 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.089 0.326 -17.453 17.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.108 3.892 3 H -0.025 1.025 4 C -0.556 4.556 5 H 0.080 0.920 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.787 3.213 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.191 1.191 12 N -0.269 5.269 13 C -0.109 4.109 14 C -0.065 4.065 15 C -0.059 4.059 16 C -0.257 4.257 17 C -0.143 4.143 18 N -0.158 5.158 19 N -0.166 5.166 20 C -0.046 4.046 21 C -0.089 4.089 22 H 0.046 0.954 23 H 0.052 0.948 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.021 0.979 29 H 0.078 0.922 30 H 0.028 0.972 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.209 0.791 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.129 0.871 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 3.146 0.480 -18.438 18.711 hybrid contribution 0.809 0.511 1.753 1.998 sum 3.955 0.991 -16.685 17.176 Atomic orbital electron populations 1.21658 0.97513 0.99244 0.99439 1.19043 0.92562 0.90001 0.87634 1.02503 1.21474 1.30965 1.12290 0.90897 0.91959 1.25750 0.95388 0.95791 1.02026 1.70034 1.37956 1.24375 1.23971 0.85505 0.77908 0.79157 0.78755 1.20194 1.21039 1.19116 1.62077 1.10383 1.52389 1.02045 1.22243 0.87777 0.98757 1.02105 1.22118 0.99771 0.94620 0.90011 1.19711 1.01070 0.97313 0.87773 1.20225 0.95670 1.07802 1.02051 1.24114 0.98457 0.98581 0.93107 1.77240 1.02737 1.14112 1.21692 1.48798 1.09196 1.36603 1.22006 1.22169 1.02775 0.91658 0.87999 1.22794 0.98973 0.97794 0.89344 0.95391 0.94841 0.92384 0.93033 0.92472 0.89895 0.97875 0.92231 0.97201 0.90546 0.90824 0.79099 0.89352 0.89334 0.87067 0.78247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.12 8.76 71.98 0.63 -5.49 16 2 C 0.21 11.25 2.06 44.17 0.09 11.34 16 3 H -0.04 -2.50 8.14 -2.39 -0.02 -2.52 16 4 C -0.52 -28.87 7.93 25.60 0.20 -28.67 16 5 H 0.06 3.42 6.39 -2.91 -0.02 3.40 16 6 C 0.01 0.48 5.30 84.66 0.45 0.93 16 7 N -0.92 -54.14 11.32 21.45 0.24 -53.90 16 8 Si 0.96 43.97 29.54 68.60 2.03 46.00 16 9 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 12 N -0.54 -23.47 4.62 -901.45 -4.17 -27.63 16 13 C 0.04 1.51 9.05 127.69 1.16 2.66 16 14 C 0.06 2.29 4.76 86.30 0.41 2.70 16 15 C -0.02 -0.56 5.63 29.85 0.17 -0.39 16 16 C -0.25 -6.51 5.35 -20.15 -0.11 -6.62 16 17 C 0.04 1.16 11.96 85.24 1.02 2.18 16 18 N -0.34 -9.50 12.58 -57.02 -0.72 -10.21 16 19 N -0.38 -8.65 4.01 -369.55 -1.48 -10.14 16 20 C 0.09 1.15 11.47 127.77 1.47 2.62 16 21 C 0.06 1.28 11.40 83.54 0.95 2.24 16 22 H 0.03 1.26 6.20 -2.39 -0.01 1.25 16 23 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 25 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 26 H 0.06 2.36 6.23 -2.39 -0.01 2.34 16 27 H 0.08 2.52 6.30 -2.39 -0.02 2.50 16 28 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.06 2.31 5.83 -2.39 -0.01 2.29 16 30 H 0.01 0.37 8.12 -2.38 -0.02 0.35 16 31 H 0.08 1.94 6.47 -2.38 -0.02 1.92 16 32 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.19 4.52 8.06 -2.91 -0.02 4.50 16 34 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.20 3.06 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -68.12 300.11 3.38 -64.74 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 1.04 Total: 7.63 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: 6.44 Total: -16.49 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -6.12 Total: -101.88 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -68.12 3.38 -64.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229960183.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.337 kcal (2) G-P(sol) polarization free energy of solvation -68.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds