Wall clock time and date at job start Sun Mar 29 2020 21:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46839 * 2 1 4 4 C 1.50696 * 109.47046 * 239.99876 * 2 1 3 5 5 H 1.08000 * 120.00459 * 245.50134 * 4 2 1 6 6 C 1.37884 * 119.99947 * 65.50870 * 4 2 1 7 7 N 1.31512 * 119.99896 * 9.67206 * 6 4 2 8 8 Si 1.86795 * 120.00146 * 189.67992 * 6 4 2 9 9 H 1.48492 * 109.47588 * 84.99005 * 8 6 4 10 10 H 1.48497 * 109.46999 * 204.99509 * 8 6 4 11 11 H 1.48509 * 109.46908 * 324.98785 * 8 6 4 12 12 N 1.46901 * 109.47263 * 120.00135 * 2 1 3 13 13 C 1.46906 * 110.99959 * 58.94929 * 12 2 1 14 14 C 1.46903 * 110.99658 * 295.00369 * 12 2 1 15 15 C 1.53011 * 109.46813 * 189.99858 * 14 12 2 16 16 C 1.50699 * 109.46778 * 179.97438 * 15 14 12 17 17 C 1.39867 * 126.03875 * 269.68800 * 16 15 14 18 18 N 1.30836 * 108.20150 * 179.82389 * 17 16 15 19 19 N 1.40085 * 108.20689 * 0.43843 * 18 17 16 20 20 C 1.46501 * 126.04268 * 179.69771 * 19 18 17 21 21 C 1.34952 * 107.92223 * 359.72274 * 19 18 17 22 22 H 1.08998 * 109.47225 * 301.14490 * 1 2 3 23 23 H 1.08996 * 109.47128 * 61.15032 * 1 2 3 24 24 H 1.09007 * 109.47005 * 181.14784 * 1 2 3 25 25 H 0.96995 * 120.00113 * 180.02562 * 7 6 4 26 26 H 1.09005 * 109.46649 * 60.00518 * 13 12 2 27 27 H 1.08995 * 109.46964 * 179.97438 * 13 12 2 28 28 H 1.08993 * 109.47694 * 300.00588 * 13 12 2 29 29 H 1.09003 * 109.47019 * 309.99491 * 14 12 2 30 30 H 1.08995 * 109.47678 * 70.00021 * 14 12 2 31 31 H 1.08993 * 109.46860 * 300.00188 * 15 14 12 32 32 H 1.08995 * 109.46865 * 59.99665 * 15 14 12 33 33 H 1.08003 * 125.90329 * 0.02562 * 17 16 15 34 34 H 1.09000 * 109.46816 * 270.02823 * 20 19 18 35 35 H 1.08999 * 109.46515 * 30.02772 * 20 19 18 36 36 H 1.08996 * 109.47124 * 150.02403 * 20 19 18 37 37 H 1.07999 * 126.12780 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5780 -1.6374 -1.1339 6 6 1.7954 -0.1768 -2.4796 7 7 1.3031 1.0373 -2.5934 8 14 2.1735 -1.1786 -4.0102 9 1 1.0192 -2.0586 -4.3235 10 1 2.4221 -0.2627 -5.1523 11 1 3.3801 -2.0109 -3.7715 12 7 2.0197 -0.6925 1.1994 13 6 1.5283 -2.0762 1.2460 14 6 1.6487 0.0391 2.4180 15 6 2.3789 -0.5663 3.6186 16 6 1.9987 0.1846 4.8687 17 6 2.6575 1.3033 5.3890 18 7 2.0341 1.6751 6.4775 19 7 0.9632 0.7974 6.6901 20 6 0.0115 0.8521 7.8026 21 6 0.9633 -0.1079 5.6892 22 1 -0.3633 0.5315 0.8795 23 1 -0.3633 0.4958 -0.9001 24 1 -0.3633 -1.0275 0.0206 25 1 1.1361 1.4126 -3.4721 26 1 1.8763 -2.6151 0.3647 27 1 1.9060 -2.5658 2.1435 28 1 0.4385 -2.0743 1.2639 29 1 1.9297 1.0870 2.3125 30 1 0.5722 -0.0346 2.5726 31 1 2.0979 -1.6141 3.7241 32 1 3.4553 -0.4926 3.4641 33 1 3.5284 1.7801 4.9638 34 1 0.3878 0.2535 8.6322 35 1 -0.1100 1.8859 8.1261 36 1 -0.9510 0.4577 7.4770 37 1 0.2627 -0.9204 5.5655 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229960186.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:03 Heat of formation + Delta-G solvation = 81.818951 kcal Electronic energy + Delta-G solvation = -16702.131448 eV Core-core repulsion = 14095.488266 eV Total energy + Delta-G solvation = -2606.643182 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.09511 -37.31889 -33.91763 -32.78731 -31.57172 -29.15696 -27.99669 -26.44223 -25.08904 -24.79931 -21.90482 -21.01240 -19.90543 -18.99030 -16.76104 -16.09085 -15.43467 -15.07792 -14.56003 -14.19323 -14.14591 -13.58928 -13.17275 -12.99782 -12.76795 -12.52946 -12.24770 -11.86103 -11.48185 -11.28997 -10.98137 -10.81320 -10.73025 -10.66751 -10.42525 -10.05308 -10.00660 -9.65747 -9.35811 -8.89494 -8.29543 -8.19217 -7.05512 -5.98366 -3.97488 1.93689 2.54957 2.92164 3.34640 3.40964 3.44122 4.45781 4.49112 4.88096 4.96361 5.09110 5.18734 5.22386 5.35700 5.51710 5.67907 5.86932 5.96847 6.11397 6.18472 6.28613 6.43460 6.64982 6.68784 6.70296 6.76252 6.82688 6.92564 7.06222 7.13914 7.52495 7.66624 7.75613 7.89987 8.19222 8.42516 8.68987 9.07989 9.65629 11.11592 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.053531 B = 0.004503 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.936246 B = 6216.469357 C = 6272.867742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.209 3.791 3 H 0.045 0.955 4 C -0.501 4.501 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.891 3.109 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.535 5.535 13 C 0.032 3.968 14 C 0.062 3.938 15 C -0.039 4.039 16 C -0.220 4.220 17 C 0.054 3.946 18 N -0.305 5.305 19 N -0.384 5.384 20 C 0.105 3.895 21 C 0.048 3.952 22 H 0.011 0.989 23 H 0.068 0.932 24 H 0.032 0.968 25 H 0.260 0.740 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.015 0.985 29 H 0.064 0.936 30 H 0.021 0.979 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.183 0.817 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.527 -2.692 16.677 17.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.102 3.898 3 H 0.063 0.937 4 C -0.540 4.540 5 H 0.081 0.919 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.719 3.281 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.259 5.259 13 C -0.117 4.117 14 C -0.066 4.066 15 C -0.078 4.078 16 C -0.232 4.232 17 C -0.132 4.132 18 N -0.126 5.126 19 N -0.167 5.167 20 C -0.037 4.037 21 C -0.097 4.097 22 H 0.030 0.970 23 H 0.087 0.913 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.033 0.967 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.200 0.800 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.212 -1.721 17.598 17.819 hybrid contribution -0.931 -0.997 -1.519 2.042 sum -3.143 -2.718 16.078 16.607 Atomic orbital electron populations 1.22342 1.01494 0.98898 0.99753 1.19317 0.89124 0.95138 0.86184 0.93669 1.21107 1.34928 1.08126 0.89837 0.91922 1.24927 0.95562 0.94673 0.98950 1.69970 1.45613 1.13928 1.23656 0.86618 0.78643 0.80081 0.82716 1.20789 1.21428 1.19888 1.62343 1.59453 1.01841 1.02236 1.22276 0.96908 0.91636 1.00875 1.22009 0.96308 0.98212 0.90113 1.19958 1.01113 0.97471 0.89221 1.20258 0.99775 1.01711 1.01442 1.23864 1.00022 0.96086 0.93205 1.77296 1.00178 1.15207 1.19929 1.48399 1.24241 1.23032 1.21007 1.21775 0.90452 1.04258 0.87210 1.22317 1.00675 0.96366 0.90348 0.96978 0.91341 0.94904 0.93058 0.91093 0.93787 0.96660 0.91729 0.96110 0.91820 0.90588 0.79978 0.91104 0.89555 0.89710 0.81281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 8.36 37.16 0.31 -3.68 16 2 C 0.21 5.30 2.20 -68.86 -0.15 5.14 16 3 H 0.05 1.28 7.98 -51.93 -0.41 0.87 16 4 C -0.50 -13.79 7.97 -34.44 -0.27 -14.07 16 5 H 0.06 1.72 6.56 -52.49 -0.34 1.37 16 6 C 0.06 1.68 5.19 -17.82 -0.09 1.58 16 7 N -0.89 -25.87 12.17 55.43 0.67 -25.19 16 8 Si 0.89 21.42 29.55 -169.99 -5.02 16.40 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.54 -11.49 4.74 -236.27 -1.12 -12.61 16 13 C 0.03 0.61 8.70 60.07 0.52 1.13 16 14 C 0.06 1.14 4.38 -3.82 -0.02 1.12 16 15 C -0.04 -0.58 5.63 -27.88 -0.16 -0.73 16 16 C -0.22 -3.08 5.35 -105.06 -0.56 -3.65 16 17 C 0.05 0.76 11.96 -17.37 -0.21 0.56 16 18 N -0.30 -4.47 12.58 30.62 0.39 -4.08 16 19 N -0.38 -4.73 4.01 -68.16 -0.27 -5.01 16 20 C 0.10 0.78 11.47 59.85 0.69 1.47 16 21 C 0.05 0.59 11.40 -17.22 -0.20 0.40 16 22 H 0.01 0.25 6.81 -51.93 -0.35 -0.10 16 23 H 0.07 1.81 6.89 -51.93 -0.36 1.45 16 24 H 0.03 0.75 6.32 -51.92 -0.33 0.43 16 25 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.07 1.47 6.43 -51.93 -0.33 1.13 16 27 H 0.04 0.72 6.30 -51.93 -0.33 0.39 16 28 H 0.01 0.29 6.26 -51.93 -0.32 -0.03 16 29 H 0.06 1.25 8.00 -51.93 -0.42 0.83 16 30 H 0.02 0.39 6.96 -51.93 -0.36 0.03 16 31 H 0.06 0.90 6.47 -51.93 -0.34 0.56 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.18 2.17 8.06 -52.48 -0.42 1.75 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.17 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 298.97 15.07 4.51 4.51 Total: -1.00 -31.41 298.97 -6.56 -37.97 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.57 Total: -1.26 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -0.14 Total: -10.72 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.33 Total: -46.89 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.41 -6.56 -37.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229960186.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.790 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds