Wall clock time and date at job start Sun Mar 29 2020 21:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46892 * 109.47697 * 2 1 4 4 C 1.46902 * 110.99816 * 297.55555 * 3 2 1 5 5 C 1.50700 * 109.46681 * 292.79803 * 4 3 2 6 6 H 1.07993 * 120.00487 * 354.99078 * 5 4 3 7 7 C 1.37879 * 120.00038 * 174.98842 * 5 4 3 8 8 N 1.31517 * 120.00050 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00280 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47119 * 59.99617 * 9 7 5 11 11 H 1.48500 * 109.47563 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47078 * 299.99874 * 9 7 5 13 13 C 1.46900 * 111.00246 * 61.50260 * 3 2 1 14 14 C 1.53000 * 109.46879 * 66.04864 * 13 3 2 15 15 C 1.50700 * 109.47109 * 180.02562 * 14 13 3 16 16 C 1.35319 * 126.13297 * 85.02356 * 15 14 13 17 17 C 1.39866 * 107.91989 * 180.24330 * 16 15 14 18 18 N 1.30841 * 108.20523 * 359.55491 * 17 16 15 19 19 N 1.34955 * 126.12130 * 265.00009 * 15 14 13 20 20 C 1.46492 * 126.04075 * 359.97438 * 19 15 14 21 21 H 1.08995 * 109.47256 * 179.51367 * 1 2 3 22 22 H 1.09001 * 109.46750 * 299.51752 * 1 2 3 23 23 H 1.09003 * 109.46786 * 59.51434 * 1 2 3 24 24 H 1.08997 * 109.46831 * 239.99676 * 2 1 3 25 25 H 1.09002 * 109.46848 * 119.99972 * 2 1 3 26 26 H 1.09004 * 109.47759 * 52.79676 * 4 3 2 27 27 H 1.08999 * 109.47591 * 172.80335 * 4 3 2 28 28 H 0.96994 * 120.00040 * 179.97438 * 8 7 5 29 29 H 1.09007 * 109.47184 * 306.05045 * 13 3 2 30 30 H 1.08999 * 109.47464 * 186.04939 * 13 3 2 31 31 H 1.08993 * 109.47039 * 59.99964 * 14 13 3 32 32 H 1.08999 * 109.47117 * 299.99720 * 14 13 3 33 33 H 1.07999 * 126.03280 * 359.97438 * 16 15 14 34 34 H 1.08001 * 125.89686 * 179.73399 * 17 16 15 35 35 H 1.09002 * 109.47038 * 90.00291 * 20 19 15 36 36 H 1.08998 * 109.48013 * 210.00135 * 20 19 15 37 37 H 1.09001 * 109.47339 * 330.00669 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.5972 2.0927 -1.2159 5 6 2.2901 1.4933 -2.4124 6 1 3.0357 0.7242 -2.2755 7 6 1.9720 1.9269 -3.6821 8 7 1.0636 2.8631 -3.8489 9 14 2.8304 1.1835 -5.1653 10 1 2.5674 -0.2774 -5.2086 11 1 2.3139 1.8170 -6.4051 12 1 4.2927 1.4204 -5.0612 13 6 1.5785 2.0994 1.2052 14 6 2.2409 1.4791 2.4371 15 6 1.7877 2.2117 3.6736 16 6 0.6580 1.9668 4.3771 17 6 0.6115 2.8695 5.4445 18 7 1.6799 3.6228 5.3896 19 7 2.4361 3.2293 4.2779 20 6 3.7069 3.8178 3.8481 21 1 -0.3633 -1.0276 -0.0087 22 1 -0.3633 0.5063 0.8943 23 1 -0.3633 0.5214 -0.8856 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 0.5179 1.9972 -1.3355 27 1 1.8617 3.1469 -1.1332 28 1 0.8402 3.1684 -4.7420 29 1 0.4951 2.0218 1.2974 30 1 1.8624 3.1491 1.1298 31 1 3.3241 1.5567 2.3449 32 1 1.9568 0.4295 2.5125 33 1 -0.0798 1.2110 4.1514 34 1 -0.1698 2.9318 6.1875 35 1 3.5122 4.6368 3.1556 36 1 4.2442 4.1972 4.7173 37 1 4.3099 3.0576 3.3515 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230760868.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:46 Heat of formation + Delta-G solvation = 76.409982 kcal Electronic energy + Delta-G solvation = -16877.311016 eV Core-core repulsion = 14270.433284 eV Total energy + Delta-G solvation = -2606.877732 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.12180 -37.51467 -33.51882 -32.82879 -32.05364 -29.50832 -28.34330 -26.65822 -25.88610 -23.64532 -22.48985 -21.03983 -19.65841 -19.02423 -16.62978 -16.22236 -15.39642 -15.32493 -14.90463 -14.39963 -14.25145 -13.68859 -13.16282 -12.99246 -12.71955 -12.62767 -12.33630 -11.92624 -11.89309 -11.62841 -11.24669 -10.95154 -10.80541 -10.69102 -10.52000 -10.44750 -10.03920 -9.74876 -9.30115 -9.08298 -8.43999 -8.38990 -7.22438 -6.03429 -4.04825 1.96913 2.61416 2.93102 3.32236 3.36688 3.39220 4.40007 4.62769 4.65023 5.09905 5.17652 5.23864 5.27138 5.31886 5.45470 5.54325 5.72541 5.78384 5.85892 5.88409 5.94933 6.06371 6.19068 6.30568 6.41307 6.52347 6.69436 6.74384 6.90297 7.10008 7.29223 7.43297 7.79324 7.80133 8.08123 8.17467 8.53376 9.03100 9.59383 11.07175 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.038543 B = 0.005125 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.278523 B = 5461.598791 C = 5755.362627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.058 3.942 3 N -0.536 5.536 4 C 0.189 3.811 5 C -0.506 4.506 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.060 3.940 14 C -0.056 4.056 15 C 0.101 3.899 16 C -0.280 4.280 17 C 0.044 3.956 18 N -0.308 5.308 19 N -0.372 5.372 20 C 0.099 3.901 21 H 0.047 0.953 22 H 0.046 0.954 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.053 0.947 26 H 0.004 0.996 27 H 0.023 0.977 28 H 0.261 0.739 29 H 0.035 0.965 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.144 0.856 34 H 0.180 0.820 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.121 -2.324 13.989 14.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.070 4.070 3 N -0.259 5.259 4 C 0.064 3.936 5 C -0.545 4.545 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.069 4.069 14 C -0.096 4.096 15 C -0.027 4.027 16 C -0.309 4.309 17 C -0.141 4.141 18 N -0.130 5.130 19 N -0.154 5.154 20 C -0.043 4.043 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.087 0.913 24 H 0.099 0.901 25 H 0.071 0.929 26 H 0.022 0.978 27 H 0.041 0.959 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.162 0.838 34 H 0.197 0.803 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.342 -1.185 14.344 14.582 hybrid contribution -1.024 -0.868 -1.267 1.846 sum 1.318 -2.053 13.077 13.302 Atomic orbital electron populations 1.22391 0.99396 1.01012 1.02082 1.22003 0.92182 0.91484 1.01328 1.62352 1.59169 1.01996 1.02414 1.19776 0.94917 0.93599 0.85299 1.21105 1.21809 1.21455 0.90092 0.91951 1.24981 0.95294 0.95259 0.99035 1.69946 1.32088 1.29279 1.22580 0.86581 0.79886 0.79279 0.81778 1.20275 1.21406 1.20210 1.21959 0.97246 0.97928 0.89816 1.20361 1.01481 0.98967 0.88770 1.21253 0.93963 0.91139 0.96377 1.21223 1.01326 1.07805 1.00556 1.23763 0.96670 0.94590 0.99110 1.77300 1.06552 1.23955 1.05181 1.48495 1.19047 1.26792 1.21088 1.21865 0.81642 0.99658 1.01113 0.93415 0.93526 0.91337 0.90065 0.92886 0.97816 0.95906 0.92894 0.94689 0.91819 0.90153 0.89341 0.83806 0.80334 0.90548 0.89613 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.31 9.26 37.16 0.34 -2.96 16 2 C 0.06 1.07 5.67 -3.83 -0.02 1.05 16 3 N -0.54 -10.93 4.69 -236.07 -1.11 -12.03 16 4 C 0.19 4.77 4.54 -4.97 -0.02 4.75 16 5 C -0.51 -13.84 8.39 -34.44 -0.29 -14.13 16 6 H 0.06 1.69 7.39 -52.49 -0.39 1.30 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 9 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.06 1.03 4.72 -3.82 -0.02 1.02 16 14 C -0.06 -0.79 5.43 -27.88 -0.15 -0.94 16 15 C 0.10 1.43 6.19 -82.26 -0.51 0.92 16 16 C -0.28 -3.78 10.72 -40.01 -0.43 -4.21 16 17 C 0.04 0.58 12.03 -17.36 -0.21 0.37 16 18 N -0.31 -4.62 12.58 30.62 0.39 -4.24 16 19 N -0.37 -5.25 4.01 -63.89 -0.26 -5.50 16 20 C 0.10 1.05 11.27 59.84 0.67 1.72 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.05 0.75 6.33 -51.93 -0.33 0.42 16 23 H 0.07 1.41 6.28 -51.93 -0.33 1.08 16 24 H 0.08 1.64 6.98 -51.93 -0.36 1.28 16 25 H 0.05 0.83 6.40 -51.93 -0.33 0.49 16 26 H 0.00 0.11 6.02 -51.93 -0.31 -0.20 16 27 H 0.02 0.62 7.91 -51.93 -0.41 0.21 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.04 0.62 6.06 -51.93 -0.31 0.31 16 30 H 0.06 1.16 7.92 -51.93 -0.41 0.74 16 31 H 0.08 1.08 6.95 -51.93 -0.36 0.72 16 32 H 0.09 1.17 6.52 -51.93 -0.34 0.83 16 33 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.18 1.70 8.06 -52.49 -0.42 1.27 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.83 6.98 -51.93 -0.36 0.47 16 LS Contribution 299.67 15.07 4.52 4.52 Total: -1.00 -30.99 299.67 -6.97 -37.97 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -5.50 Total: -0.39 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -0.73 Total: -10.97 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.24 Total: -47.43 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.99 -6.97 -37.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230760868.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.375 kcal (2) G-P(sol) polarization free energy of solvation -30.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds