Wall clock time and date at job start Sun Mar 29 2020 21:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46892 * 109.47697 * 2 1 4 4 C 1.46902 * 110.99816 * 297.55555 * 3 2 1 5 5 C 1.50700 * 109.46681 * 292.79803 * 4 3 2 6 6 H 1.07993 * 120.00487 * 354.99078 * 5 4 3 7 7 C 1.37879 * 120.00038 * 174.98842 * 5 4 3 8 8 N 1.31517 * 120.00050 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00280 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47119 * 59.99617 * 9 7 5 11 11 H 1.48500 * 109.47563 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47078 * 299.99874 * 9 7 5 13 13 C 1.46900 * 111.00246 * 61.50260 * 3 2 1 14 14 C 1.53000 * 109.46879 * 66.04864 * 13 3 2 15 15 C 1.50700 * 109.47109 * 180.02562 * 14 13 3 16 16 C 1.35319 * 126.13297 * 85.02356 * 15 14 13 17 17 C 1.39866 * 107.91989 * 180.24330 * 16 15 14 18 18 N 1.30841 * 108.20523 * 359.55491 * 17 16 15 19 19 N 1.34955 * 126.12130 * 265.00009 * 15 14 13 20 20 C 1.46492 * 126.04075 * 359.97438 * 19 15 14 21 21 H 1.08995 * 109.47256 * 179.51367 * 1 2 3 22 22 H 1.09001 * 109.46750 * 299.51752 * 1 2 3 23 23 H 1.09003 * 109.46786 * 59.51434 * 1 2 3 24 24 H 1.08997 * 109.46831 * 239.99676 * 2 1 3 25 25 H 1.09002 * 109.46848 * 119.99972 * 2 1 3 26 26 H 1.09004 * 109.47759 * 52.79676 * 4 3 2 27 27 H 1.08999 * 109.47591 * 172.80335 * 4 3 2 28 28 H 0.96994 * 120.00040 * 179.97438 * 8 7 5 29 29 H 1.09007 * 109.47184 * 306.05045 * 13 3 2 30 30 H 1.08999 * 109.47464 * 186.04939 * 13 3 2 31 31 H 1.08993 * 109.47039 * 59.99964 * 14 13 3 32 32 H 1.08999 * 109.47117 * 299.99720 * 14 13 3 33 33 H 1.07999 * 126.03280 * 359.97438 * 16 15 14 34 34 H 1.08001 * 125.89686 * 179.73399 * 17 16 15 35 35 H 1.09002 * 109.47038 * 90.00291 * 20 19 15 36 36 H 1.08998 * 109.48013 * 210.00135 * 20 19 15 37 37 H 1.09001 * 109.47339 * 330.00669 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.5972 2.0927 -1.2159 5 6 2.2901 1.4933 -2.4124 6 1 3.0357 0.7242 -2.2755 7 6 1.9720 1.9269 -3.6821 8 7 1.0636 2.8631 -3.8489 9 14 2.8304 1.1835 -5.1653 10 1 2.5674 -0.2774 -5.2086 11 1 2.3139 1.8170 -6.4051 12 1 4.2927 1.4204 -5.0612 13 6 1.5785 2.0994 1.2052 14 6 2.2409 1.4791 2.4371 15 6 1.7877 2.2117 3.6736 16 6 0.6580 1.9668 4.3771 17 6 0.6115 2.8695 5.4445 18 7 1.6799 3.6228 5.3896 19 7 2.4361 3.2293 4.2779 20 6 3.7069 3.8178 3.8481 21 1 -0.3633 -1.0276 -0.0087 22 1 -0.3633 0.5063 0.8943 23 1 -0.3633 0.5214 -0.8856 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 0.5179 1.9972 -1.3355 27 1 1.8617 3.1469 -1.1332 28 1 0.8402 3.1684 -4.7420 29 1 0.4951 2.0218 1.2974 30 1 1.8624 3.1491 1.1298 31 1 3.3241 1.5567 2.3449 32 1 1.9568 0.4295 2.5125 33 1 -0.0798 1.2110 4.1514 34 1 -0.1698 2.9318 6.1875 35 1 3.5122 4.6368 3.1556 36 1 4.2442 4.1972 4.7173 37 1 4.3099 3.0576 3.3515 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230760868.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:46 Heat of formation + Delta-G solvation = 55.997798 kcal Electronic energy + Delta-G solvation = -16878.196154 eV Core-core repulsion = 14270.433284 eV Total energy + Delta-G solvation = -2607.762871 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.14722 -39.09831 -35.01773 -34.30394 -33.37035 -31.04956 -29.85072 -27.67543 -27.48465 -25.18067 -24.22006 -22.04457 -20.98816 -20.33853 -18.33954 -17.71413 -16.94285 -16.54570 -16.37278 -16.05421 -15.34690 -14.78017 -14.71124 -14.54954 -13.95550 -13.80876 -13.56262 -13.20712 -13.14483 -13.09406 -13.03662 -12.57024 -12.54847 -12.27527 -12.16534 -11.84025 -11.59515 -11.30070 -11.24730 -10.57085 -10.18807 -9.43640 -8.91914 -8.16890 -6.26466 0.91534 1.42963 1.45497 1.53270 1.67670 1.92166 2.42484 3.15993 3.27987 3.74421 3.87887 4.00416 4.23102 4.35333 4.37334 4.40835 4.48532 4.58061 4.65126 4.66377 4.77344 4.83215 4.93150 4.97113 5.07703 5.10900 5.25435 5.34618 5.42433 5.55046 5.70556 5.78610 6.10113 6.11556 6.38665 6.67452 6.78259 6.90800 7.43178 8.93567 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.038543 B = 0.005125 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.278523 B = 5461.598791 C = 5755.362627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.057 3.943 3 N -0.539 5.539 4 C 0.203 3.797 5 C -0.518 4.518 6 H 0.064 0.936 7 C 0.002 3.998 8 N -0.937 5.937 9 Si 0.966 3.034 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.066 3.934 14 C -0.040 4.040 15 C 0.087 3.913 16 C -0.286 4.286 17 C 0.042 3.958 18 N -0.337 5.337 19 N -0.380 5.380 20 C 0.091 3.909 21 H 0.073 0.927 22 H 0.059 0.941 23 H 0.028 0.972 24 H 0.060 0.940 25 H 0.092 0.908 26 H -0.021 1.021 27 H -0.008 1.008 28 H 0.263 0.737 29 H 0.031 0.969 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.160 0.840 34 H 0.210 0.790 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.685 -3.836 14.864 15.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.071 4.071 3 N -0.263 5.263 4 C 0.077 3.923 5 C -0.556 4.556 6 H 0.082 0.918 7 C -0.196 4.196 8 N -0.578 5.578 9 Si 0.790 3.210 10 H -0.192 1.192 11 H -0.212 1.212 12 H -0.194 1.194 13 C -0.063 4.063 14 C -0.079 4.079 15 C -0.042 4.042 16 C -0.315 4.315 17 C -0.143 4.143 18 N -0.159 5.159 19 N -0.163 5.163 20 C -0.050 4.050 21 H 0.092 0.908 22 H 0.078 0.922 23 H 0.047 0.953 24 H 0.078 0.922 25 H 0.110 0.890 26 H -0.003 1.003 27 H 0.010 0.990 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.178 0.822 34 H 0.227 0.773 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.919 -2.707 15.242 15.754 hybrid contribution -1.230 -0.377 -1.466 1.950 sum 1.689 -3.084 13.777 14.218 Atomic orbital electron populations 1.22288 0.98687 1.02263 1.00754 1.22078 0.92785 0.90038 1.02153 1.62243 1.59444 1.02925 1.01657 1.19409 0.93183 0.92332 0.87352 1.21428 1.21758 1.21331 0.91096 0.91806 1.25876 0.95920 0.95587 1.02211 1.70084 1.33651 1.30753 1.23266 0.85491 0.78882 0.78775 0.77806 1.19154 1.21200 1.19359 1.21917 0.97315 0.97146 0.89931 1.20168 1.01540 0.99303 0.86885 1.21328 0.94608 0.91632 0.96621 1.21556 1.01344 1.08162 1.00458 1.24326 0.96730 0.93707 0.99494 1.77262 1.07546 1.25013 1.06085 1.48776 1.19774 1.26821 1.20950 1.22090 0.80946 1.00074 1.01862 0.90782 0.92170 0.95315 0.92161 0.89032 1.00299 0.98987 0.92867 0.95079 0.93456 0.89390 0.87811 0.82214 0.77315 0.90734 0.88201 0.87792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.10 9.26 71.98 0.67 -5.44 16 2 C 0.06 2.01 5.67 86.31 0.49 2.50 16 3 N -0.54 -21.87 4.69 -900.79 -4.23 -26.10 16 4 C 0.20 10.60 4.54 85.56 0.39 10.98 16 5 C -0.52 -28.72 8.39 25.60 0.21 -28.51 16 6 H 0.06 3.45 7.39 -2.91 -0.02 3.43 16 7 C 0.00 0.10 5.46 84.65 0.46 0.56 16 8 N -0.94 -56.23 13.29 21.45 0.28 -55.94 16 9 Si 0.97 43.75 29.54 68.60 2.03 45.77 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 13 C 0.07 2.24 4.72 86.30 0.41 2.65 16 14 C -0.04 -1.03 5.43 29.85 0.16 -0.87 16 15 C 0.09 2.30 6.19 41.40 0.26 2.56 16 16 C -0.29 -7.10 10.72 21.99 0.24 -6.86 16 17 C 0.04 1.02 12.03 85.23 1.02 2.04 16 18 N -0.34 -9.65 12.58 -57.02 -0.72 -10.37 16 19 N -0.38 -10.25 4.01 -356.04 -1.43 -11.68 16 20 C 0.09 1.84 11.27 127.77 1.44 3.28 16 21 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 22 H 0.06 1.84 6.33 -2.39 -0.02 1.82 16 23 H 0.03 1.18 6.28 -2.39 -0.01 1.17 16 24 H 0.06 2.38 6.98 -2.39 -0.02 2.36 16 25 H 0.09 2.54 6.40 -2.39 -0.02 2.52 16 26 H -0.02 -1.17 6.02 -2.39 -0.01 -1.18 16 27 H -0.01 -0.46 7.91 -2.39 -0.02 -0.47 16 28 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 29 H 0.03 1.08 6.06 -2.38 -0.01 1.07 16 30 H 0.05 1.74 7.92 -2.39 -0.02 1.73 16 31 H 0.09 2.15 6.95 -2.39 -0.02 2.14 16 32 H 0.10 2.37 6.52 -2.39 -0.02 2.36 16 33 H 0.16 3.33 8.06 -2.91 -0.02 3.30 16 34 H 0.21 3.41 8.06 -2.91 -0.02 3.39 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.10 1.77 6.98 -2.39 -0.02 1.75 16 Total: -1.00 -67.36 299.67 2.73 -64.63 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 1.05 Total: 10.77 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 5.75 Total: -17.09 kcal Atomic # 7 Polarization: -97.99 SS G_CDS: -6.09 Total: -104.08 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -67.36 2.73 -64.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230760868.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.630 kcal (2) G-P(sol) polarization free energy of solvation -67.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds