Wall clock time and date at job start Sun Mar 29 2020 21:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99398 * 2 1 4 4 H 1.48497 * 109.47418 * 270.00403 * 3 2 1 5 5 H 1.48502 * 109.47118 * 30.00518 * 3 2 1 6 6 H 1.48506 * 109.46688 * 150.00445 * 3 2 1 7 7 C 1.37873 * 120.00348 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99885 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99942 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47109 * 180.02562 * 9 7 2 11 11 C 1.46894 * 111.00270 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47104 * 34.99612 * 11 10 9 13 13 C 1.52999 * 109.46927 * 275.00239 * 11 10 9 14 14 C 1.53005 * 109.47159 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47452 * 59.99536 * 14 13 11 16 16 H 1.09002 * 109.46695 * 59.99734 * 15 14 13 17 17 C 1.52997 * 109.47232 * 179.97438 * 15 14 13 18 18 C 1.52996 * 109.46975 * 60.00237 * 17 15 14 19 19 C 1.53002 * 109.47346 * 59.99594 * 18 17 15 20 20 C 1.52997 * 109.47415 * 300.00136 * 19 18 17 21 21 C 1.52996 * 109.46975 * 59.99636 * 20 19 18 22 22 H 1.09004 * 109.47368 * 60.00217 * 21 20 19 23 23 C 1.52997 * 109.47515 * 154.99879 * 11 10 9 24 24 H 0.96990 * 120.00360 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47093 * 60.00326 * 9 7 2 26 26 H 1.08998 * 109.46898 * 299.99928 * 9 7 2 27 27 H 1.00901 * 111.00119 * 56.04427 * 10 9 7 28 28 H 1.09000 * 109.47486 * 59.99528 * 13 11 10 29 29 H 1.09002 * 109.46716 * 299.99610 * 13 11 10 30 30 H 1.09002 * 109.46935 * 299.99411 * 14 13 11 31 31 H 1.09001 * 109.46812 * 179.97438 * 14 13 11 32 32 H 1.09000 * 109.47140 * 179.97438 * 17 15 14 33 33 H 1.09001 * 109.46922 * 300.00149 * 17 15 14 34 34 H 1.08996 * 109.47261 * 180.02562 * 18 17 15 35 35 H 1.09004 * 109.47368 * 299.99783 * 18 17 15 36 36 H 1.09000 * 109.46986 * 60.00254 * 19 18 17 37 37 H 1.09002 * 109.47070 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.47140 * 300.00024 * 20 19 18 39 39 H 1.08992 * 109.47280 * 180.02562 * 20 19 18 40 40 H 1.09002 * 109.47153 * 59.99762 * 23 11 10 41 41 H 1.09001 * 109.46832 * 299.99953 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0467 -1.4000 5 1 1.4464 2.6527 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2059 -3.6156 -0.0005 11 6 1.5057 -4.9070 -0.0011 12 1 0.5927 -4.8250 -0.5908 13 6 1.1516 -5.2958 1.4356 14 6 0.4229 -6.6411 1.4351 15 6 1.3297 -7.7122 0.8257 16 1 2.2428 -7.7936 1.4155 17 6 0.6013 -9.0576 0.8258 18 6 -0.6805 -8.9435 -0.0018 19 6 -0.3270 -8.5549 -1.4388 20 6 0.4015 -7.2095 -1.4389 21 6 1.6833 -7.3236 -0.6113 22 1 2.3294 -8.0866 -1.0455 23 6 2.4121 -5.9783 -0.6108 24 1 -0.4850 0.8399 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6249 -2.5570 0.8897 27 1 2.8408 -3.5486 0.7808 28 1 0.5059 -4.5325 1.8700 29 1 2.0647 -5.3778 2.0253 30 1 -0.4901 -6.5595 0.8453 31 1 0.1711 -6.9183 2.4588 32 1 1.2472 -9.8205 0.3912 33 1 0.3494 -9.3343 1.8496 34 1 -1.1998 -9.9018 -0.0014 35 1 -1.3267 -8.1805 0.4324 36 1 0.3190 -9.3180 -1.8730 37 1 -1.2403 -8.4733 -2.0282 38 1 -0.2446 -6.4465 -1.0047 39 1 0.6529 -6.9326 -2.4626 40 1 3.3251 -6.0603 -0.0211 41 1 2.6643 -5.7013 -1.6344 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250854308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:46 Heat of formation + Delta-G solvation = -42.833675 kcal Electronic energy + Delta-G solvation = -17676.442142 eV Core-core repulsion = 15167.933961 eV Total energy + Delta-G solvation = -2508.508182 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.15436 -36.13786 -33.38834 -32.14550 -31.74522 -29.40926 -28.01839 -25.58584 -23.17606 -22.15434 -22.05623 -21.09813 -20.23260 -17.86797 -16.40491 -15.47802 -15.05637 -14.81036 -14.51759 -14.13758 -13.65761 -13.40576 -13.17355 -12.79893 -12.49901 -12.05971 -11.93131 -11.82111 -11.79735 -11.44632 -11.20672 -11.04077 -10.90004 -10.73025 -10.58670 -10.36266 -10.14324 -10.03340 -9.70455 -9.67444 -9.49360 -9.08927 -8.44736 -7.16959 -6.00140 -4.01810 3.34002 3.39548 3.43492 4.45406 4.67739 4.72913 4.77224 5.14488 5.17410 5.28743 5.33037 5.35805 5.40557 5.56759 5.57023 5.63480 5.68204 5.75630 5.82580 5.85370 5.94950 6.04090 6.09494 6.10737 6.21857 6.24618 6.28882 6.40113 6.45973 6.48816 6.52632 6.63767 6.78902 6.85745 7.33349 7.50239 7.83462 8.18432 8.47524 8.69494 9.08173 9.63069 11.10932 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.048566 B = 0.004919 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.396082 B = 5691.035117 C = 5723.284207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.061 0.939 9 C 0.195 3.805 10 N -0.687 5.687 11 C 0.087 3.913 12 H 0.071 0.929 13 C -0.147 4.147 14 C -0.111 4.111 15 C -0.081 4.081 16 H 0.065 0.935 17 C -0.113 4.113 18 C -0.122 4.122 19 C -0.118 4.118 20 C -0.120 4.120 21 C -0.078 4.078 22 H 0.063 0.937 23 C -0.101 4.101 24 H 0.261 0.739 25 H 0.025 0.975 26 H -0.014 1.014 27 H 0.327 0.673 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.182 -17.846 0.827 17.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.316 5.316 11 C -0.023 4.023 12 H 0.089 0.911 13 C -0.187 4.187 14 C -0.149 4.149 15 C -0.099 4.099 16 H 0.084 0.916 17 C -0.151 4.151 18 C -0.159 4.159 19 C -0.155 4.155 20 C -0.157 4.157 21 C -0.097 4.097 22 H 0.082 0.918 23 C -0.139 4.139 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.004 0.996 27 H 0.144 0.856 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.113 -17.680 0.129 17.681 hybrid contribution 0.015 0.948 0.963 1.351 sum 0.128 -16.733 1.092 16.769 Atomic orbital electron populations 1.69963 1.06071 1.26702 1.51108 1.24987 0.94858 0.99319 0.95416 0.86500 0.79694 0.83095 0.78112 1.20635 1.21337 1.19872 1.21221 0.93507 0.90383 1.50078 0.92049 1.19550 0.90637 0.87408 0.95568 1.60740 1.20880 1.01252 1.48707 1.21546 0.96597 0.90433 0.93767 0.91076 1.22292 1.00308 0.96800 0.99280 1.21612 0.98812 0.94626 0.99878 1.21120 0.98271 0.94176 0.96337 0.91628 1.21553 0.96808 0.97180 0.99518 1.21571 0.97605 1.00914 0.95810 1.21525 0.99911 0.97655 0.96431 1.21683 0.96930 0.97115 0.99957 1.21106 0.96391 0.97359 0.94817 0.91838 1.21537 0.97945 0.93014 1.01373 0.92976 0.95656 0.99622 0.85636 0.91992 0.92529 0.91526 0.92864 0.92370 0.92426 0.92684 0.91655 0.92453 0.92417 0.91118 0.92108 0.92571 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.79 9.32 -34.44 -0.32 -15.11 16 8 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 9 C 0.20 5.19 5.24 -4.97 -0.03 5.17 16 10 N -0.69 -14.97 6.24 -108.00 -0.67 -15.65 16 11 C 0.09 1.55 2.19 -67.72 -0.15 1.40 16 12 H 0.07 1.37 6.09 -51.93 -0.32 1.05 16 13 C -0.15 -2.36 5.17 -26.73 -0.14 -2.50 16 14 C -0.11 -1.47 4.59 -26.73 -0.12 -1.59 16 15 C -0.08 -0.95 2.46 -90.62 -0.22 -1.17 16 16 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 17 C -0.11 -1.14 5.45 -26.73 -0.15 -1.29 16 18 C -0.12 -1.22 5.65 -26.73 -0.15 -1.37 16 19 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 20 C -0.12 -1.48 4.59 -26.73 -0.12 -1.60 16 21 C -0.08 -0.97 2.46 -90.62 -0.22 -1.19 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 C -0.10 -1.51 5.06 -26.73 -0.14 -1.64 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.03 0.73 8.05 -51.93 -0.42 0.31 16 26 H -0.01 -0.39 7.43 -51.93 -0.39 -0.78 16 27 H 0.33 6.89 8.47 -39.29 -0.33 6.56 16 28 H 0.06 1.12 7.45 -51.93 -0.39 0.73 16 29 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 30 H 0.07 0.90 4.81 -51.93 -0.25 0.65 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.70 6.43 -51.93 -0.33 0.36 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.98 4.81 -51.93 -0.25 0.73 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 301.30 15.07 4.54 4.54 Total: -1.00 -29.38 301.30 -9.72 -39.10 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -7.29 Total: 2.30 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -2.01 Total: -20.78 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.06 Total: -42.11 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.38 -9.72 -39.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250854308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.735 kcal (2) G-P(sol) polarization free energy of solvation -29.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds