Wall clock time and date at job start Sun Mar 29 2020 21:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99398 * 2 1 4 4 H 1.48497 * 109.47418 * 270.00403 * 3 2 1 5 5 H 1.48502 * 109.47118 * 30.00518 * 3 2 1 6 6 H 1.48506 * 109.46688 * 150.00445 * 3 2 1 7 7 C 1.37873 * 120.00348 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99885 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99942 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47109 * 180.02562 * 9 7 2 11 11 C 1.46894 * 111.00270 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47104 * 34.99612 * 11 10 9 13 13 C 1.52999 * 109.46927 * 275.00239 * 11 10 9 14 14 C 1.53005 * 109.47159 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47452 * 59.99536 * 14 13 11 16 16 H 1.09002 * 109.46695 * 59.99734 * 15 14 13 17 17 C 1.52997 * 109.47232 * 179.97438 * 15 14 13 18 18 C 1.52996 * 109.46975 * 60.00237 * 17 15 14 19 19 C 1.53002 * 109.47346 * 59.99594 * 18 17 15 20 20 C 1.52997 * 109.47415 * 300.00136 * 19 18 17 21 21 C 1.52996 * 109.46975 * 59.99636 * 20 19 18 22 22 H 1.09004 * 109.47368 * 60.00217 * 21 20 19 23 23 C 1.52997 * 109.47515 * 154.99879 * 11 10 9 24 24 H 0.96990 * 120.00360 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47093 * 60.00326 * 9 7 2 26 26 H 1.08998 * 109.46898 * 299.99928 * 9 7 2 27 27 H 1.00901 * 111.00119 * 56.04427 * 10 9 7 28 28 H 1.09000 * 109.47486 * 59.99528 * 13 11 10 29 29 H 1.09002 * 109.46716 * 299.99610 * 13 11 10 30 30 H 1.09002 * 109.46935 * 299.99411 * 14 13 11 31 31 H 1.09001 * 109.46812 * 179.97438 * 14 13 11 32 32 H 1.09000 * 109.47140 * 179.97438 * 17 15 14 33 33 H 1.09001 * 109.46922 * 300.00149 * 17 15 14 34 34 H 1.08996 * 109.47261 * 180.02562 * 18 17 15 35 35 H 1.09004 * 109.47368 * 299.99783 * 18 17 15 36 36 H 1.09000 * 109.46986 * 60.00254 * 19 18 17 37 37 H 1.09002 * 109.47070 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.47140 * 300.00024 * 20 19 18 39 39 H 1.08992 * 109.47280 * 180.02562 * 20 19 18 40 40 H 1.09002 * 109.47153 * 59.99762 * 23 11 10 41 41 H 1.09001 * 109.46832 * 299.99953 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0467 -1.4000 5 1 1.4464 2.6527 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2059 -3.6156 -0.0005 11 6 1.5057 -4.9070 -0.0011 12 1 0.5927 -4.8250 -0.5908 13 6 1.1516 -5.2958 1.4356 14 6 0.4229 -6.6411 1.4351 15 6 1.3297 -7.7122 0.8257 16 1 2.2428 -7.7936 1.4155 17 6 0.6013 -9.0576 0.8258 18 6 -0.6805 -8.9435 -0.0018 19 6 -0.3270 -8.5549 -1.4388 20 6 0.4015 -7.2095 -1.4389 21 6 1.6833 -7.3236 -0.6113 22 1 2.3294 -8.0866 -1.0455 23 6 2.4121 -5.9783 -0.6108 24 1 -0.4850 0.8399 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6249 -2.5570 0.8897 27 1 2.8408 -3.5486 0.7808 28 1 0.5059 -4.5325 1.8700 29 1 2.0647 -5.3778 2.0253 30 1 -0.4901 -6.5595 0.8453 31 1 0.1711 -6.9183 2.4588 32 1 1.2472 -9.8205 0.3912 33 1 0.3494 -9.3343 1.8496 34 1 -1.1998 -9.9018 -0.0014 35 1 -1.3267 -8.1805 0.4324 36 1 0.3190 -9.3180 -1.8730 37 1 -1.2403 -8.4733 -2.0282 38 1 -0.2446 -6.4465 -1.0047 39 1 0.6529 -6.9326 -2.4626 40 1 3.3251 -6.0603 -0.0211 41 1 2.6643 -5.7013 -1.6344 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250854308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:46 Heat of formation + Delta-G solvation = -59.983249 kcal Electronic energy + Delta-G solvation = -17677.185804 eV Core-core repulsion = 15167.933961 eV Total energy + Delta-G solvation = -2509.251843 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.24779 -37.61058 -35.20722 -33.64248 -33.00884 -30.60899 -29.49351 -27.38200 -24.35357 -23.84542 -23.15254 -22.49986 -21.42767 -19.06837 -18.40213 -16.83564 -16.55414 -16.25414 -15.77761 -15.51490 -14.86796 -14.74306 -14.53747 -14.29441 -13.89355 -13.56555 -13.25424 -13.15696 -13.03917 -12.84257 -12.68200 -12.57257 -12.31518 -12.11034 -12.03800 -11.83711 -11.52632 -11.32660 -11.21288 -10.75253 -10.72872 -10.67239 -10.59150 -9.01788 -8.23423 -6.35216 1.39831 1.42154 1.53372 2.39160 3.09432 3.52227 3.68214 3.78184 3.96667 4.06836 4.17306 4.30807 4.34073 4.49012 4.50906 4.60545 4.61517 4.69906 4.75149 4.81005 4.87428 4.92776 5.01120 5.10329 5.13625 5.18701 5.22047 5.25745 5.29719 5.32677 5.37231 5.42884 5.49349 5.57509 5.60693 5.64385 5.72742 6.02982 6.48424 6.75104 6.91069 7.36145 8.88187 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.048566 B = 0.004919 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.396082 B = 5691.035117 C = 5723.284207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.975 3.025 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.537 4.537 8 H 0.064 0.936 9 C 0.213 3.787 10 N -0.687 5.687 11 C 0.086 3.914 12 H 0.049 0.951 13 C -0.141 4.141 14 C -0.106 4.106 15 C -0.077 4.077 16 H 0.073 0.927 17 C -0.108 4.108 18 C -0.122 4.122 19 C -0.114 4.114 20 C -0.121 4.121 21 C -0.072 4.072 22 H 0.084 0.916 23 C -0.093 4.093 24 H 0.265 0.735 25 H -0.008 1.008 26 H -0.040 1.040 27 H 0.333 0.667 28 H 0.031 0.969 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.391 -19.287 1.143 19.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.799 3.201 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.085 3.915 10 N -0.316 5.316 11 C -0.024 4.024 12 H 0.067 0.933 13 C -0.180 4.180 14 C -0.144 4.144 15 C -0.095 4.095 16 H 0.091 0.909 17 C -0.145 4.145 18 C -0.160 4.160 19 C -0.151 4.151 20 C -0.158 4.158 21 C -0.091 4.091 22 H 0.102 0.898 23 C -0.131 4.131 24 H 0.074 0.926 25 H 0.010 0.990 26 H -0.023 1.023 27 H 0.150 0.850 28 H 0.050 0.950 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.330 -19.150 0.447 19.202 hybrid contribution -0.399 1.381 0.846 1.668 sum 0.931 -17.769 1.293 17.840 Atomic orbital electron populations 1.70099 1.07883 1.28004 1.51572 1.25982 0.95790 1.03469 0.94507 0.85309 0.78524 0.77822 0.78491 1.19821 1.20591 1.18650 1.21580 0.93806 0.91546 1.50601 0.91790 1.19145 0.90599 0.89019 0.92690 1.60657 1.20255 1.01700 1.49031 1.21626 0.96233 0.89436 0.95064 0.93300 1.22177 1.00461 0.97800 0.97582 1.21573 0.98562 0.93344 1.00872 1.21107 0.98383 0.94606 0.95440 0.90867 1.21525 0.96630 0.96059 1.00328 1.21585 0.97712 1.01412 0.95254 1.21500 1.00008 0.96487 0.97111 1.21666 0.96883 0.97919 0.99361 1.21086 0.96276 0.95986 0.95721 0.89800 1.21463 0.97823 0.93412 1.00368 0.92620 0.98968 1.02276 0.85034 0.95049 0.91562 0.92228 0.91476 0.90889 0.91381 0.90967 0.92827 0.91054 0.92192 0.93441 0.92763 0.91734 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.98 13.29 21.45 0.28 -57.69 16 2 C 0.00 0.03 5.46 84.65 0.46 0.49 16 3 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.54 -31.68 9.32 25.60 0.24 -31.44 16 8 H 0.06 3.66 7.81 -2.91 -0.02 3.63 16 9 C 0.21 11.95 5.24 85.56 0.45 12.40 16 10 N -0.69 -31.02 6.24 -495.59 -3.09 -34.11 16 11 C 0.09 3.18 2.19 44.92 0.10 3.28 16 12 H 0.05 2.01 6.09 -2.39 -0.01 2.00 16 13 C -0.14 -4.61 5.17 30.60 0.16 -4.45 16 14 C -0.11 -2.70 4.59 30.60 0.14 -2.56 16 15 C -0.08 -1.63 2.46 -10.79 -0.03 -1.65 16 16 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 17 C -0.11 -1.81 5.45 30.59 0.17 -1.65 16 18 C -0.12 -2.14 5.65 30.59 0.17 -1.97 16 19 C -0.11 -2.14 5.92 30.59 0.18 -1.96 16 20 C -0.12 -2.92 4.59 30.59 0.14 -2.78 16 21 C -0.07 -1.66 2.46 -10.79 -0.03 -1.69 16 22 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 23 C -0.09 -2.73 5.06 30.59 0.15 -2.57 16 24 H 0.27 15.35 8.31 -92.72 -0.77 14.58 16 25 H -0.01 -0.48 8.05 -2.39 -0.02 -0.50 16 26 H -0.04 -2.43 7.43 -2.39 -0.02 -2.44 16 27 H 0.33 14.29 8.47 -89.69 -0.76 13.54 16 28 H 0.03 1.19 7.45 -2.39 -0.02 1.17 16 29 H 0.07 2.02 8.13 -2.39 -0.02 2.00 16 30 H 0.06 1.62 4.81 -2.39 -0.01 1.61 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.05 1.07 6.43 -2.39 -0.02 1.05 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.05 1.36 4.81 -2.39 -0.01 1.35 16 39 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -64.48 301.30 1.76 -62.72 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.23 Total: 18.42 kcal Atomic # 6 Polarization: -38.87 SS G_CDS: 2.31 Total: -36.56 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -2.81 Total: -91.80 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -64.48 1.76 -62.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250854308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.740 kcal (2) G-P(sol) polarization free energy of solvation -64.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds