Wall clock time and date at job start Sun Mar 29 2020 21:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99837 * 2 1 4 4 H 1.48502 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47335 * 300.00417 * 3 2 1 6 6 H 1.48499 * 109.46844 * 60.00540 * 3 2 1 7 7 C 1.37873 * 119.99573 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99333 * 179.97438 * 7 2 1 9 9 C 1.50689 * 120.00595 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47573 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.47317 * 179.97438 * 10 9 7 12 12 C 1.46823 * 111.00133 * 314.32949 * 11 10 9 13 13 C 1.53067 * 109.59989 * 174.32033 * 12 11 10 14 14 C 1.53050 * 109.20409 * 58.90805 * 13 12 11 15 15 H 1.08998 * 109.42242 * 61.83903 * 14 13 12 16 16 C 1.52819 * 109.73597 * 181.73599 * 14 13 12 17 17 C 1.52992 * 109.63190 * 60.43759 * 16 14 13 18 18 C 1.53026 * 109.35148 * 59.93598 * 17 16 14 19 19 C 1.52953 * 109.41123 * 299.74626 * 18 17 16 20 20 C 1.53041 * 109.59684 * 60.22855 * 19 18 17 21 21 H 1.09002 * 109.60256 * 61.13787 * 20 19 18 22 22 C 1.46865 * 110.99937 * 190.00112 * 11 10 9 23 23 H 0.97003 * 119.99842 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47087 * 59.99902 * 9 7 2 25 25 H 1.09005 * 109.47518 * 300.00222 * 9 7 2 26 26 H 1.09002 * 109.46826 * 59.99948 * 10 9 7 27 27 H 1.08995 * 109.47407 * 300.00335 * 10 9 7 28 28 H 1.09001 * 109.45690 * 294.36619 * 12 11 10 29 29 H 1.09009 * 109.44959 * 54.31241 * 12 11 10 30 30 H 1.09004 * 109.51467 * 178.82361 * 13 12 11 31 31 H 1.09001 * 109.51251 * 298.93357 * 13 12 11 32 32 H 1.08999 * 109.44763 * 300.38320 * 16 14 13 33 33 H 1.09005 * 109.44595 * 180.48266 * 16 14 13 34 34 H 1.09000 * 109.48569 * 299.97068 * 17 16 14 35 35 H 1.08997 * 109.48782 * 179.89938 * 17 16 14 36 36 H 1.08997 * 109.48391 * 59.73065 * 18 17 16 37 37 H 1.09003 * 109.47967 * 179.75163 * 18 17 16 38 38 H 1.08999 * 109.44903 * 180.27259 * 19 18 17 39 39 H 1.09007 * 109.44758 * 300.22003 * 19 18 17 40 40 H 1.09007 * 109.48462 * 66.06273 * 22 11 10 41 41 H 1.08996 * 109.49016 * 305.99954 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 7 1.5107 -4.9343 -0.0012 12 6 0.4192 -4.9112 0.9805 13 6 -0.4101 -6.1918 0.8566 14 6 0.4955 -7.4028 1.0928 15 1 0.9028 -7.3592 2.1029 16 6 -0.3114 -8.6903 0.9293 17 6 -0.8784 -8.7648 -0.4898 18 6 0.2733 -8.7521 -1.4973 19 6 1.0735 -7.4583 -1.3385 20 6 1.6429 -7.3777 0.0798 21 1 2.3124 -8.2202 0.2534 22 6 2.4172 -6.0652 0.2357 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8726 -3.6047 0.8877 27 1 2.8712 -3.6040 -0.8922 28 1 0.8361 -4.8445 1.9855 29 1 -0.2185 -4.0469 0.7941 30 1 -1.2073 -6.1827 1.5999 31 1 -0.8437 -6.2495 -0.1418 32 1 -1.1305 -8.6990 1.6483 33 1 0.3359 -9.5492 1.1069 34 1 -1.5268 -7.9069 -0.6677 35 1 -1.4518 -9.6846 -0.6044 36 1 0.9247 -9.6070 -1.3157 37 1 -0.1282 -8.8096 -2.5091 38 1 1.8911 -7.4465 -2.0592 39 1 0.4206 -6.6036 -1.5161 40 1 2.8235 -6.0003 1.2452 41 1 3.2323 -6.0356 -0.4873 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250889809.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:04 Heat of formation + Delta-G solvation = -29.893899 kcal Electronic energy + Delta-G solvation = -17752.414414 eV Core-core repulsion = 15244.467343 eV Total energy + Delta-G solvation = -2507.947071 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.01018 -36.43215 -33.23471 -32.10939 -31.49107 -29.18907 -28.64578 -25.00560 -23.32775 -22.84016 -22.03627 -20.74946 -19.78758 -17.74644 -16.49692 -15.44531 -15.12048 -14.82655 -14.43128 -14.34982 -13.71323 -13.52667 -13.17616 -12.84940 -12.65250 -12.13815 -11.99648 -11.80952 -11.73083 -11.20844 -11.04899 -10.95254 -10.86616 -10.62081 -10.49556 -10.36540 -10.02858 -9.85077 -9.68819 -9.65596 -9.21588 -9.01777 -8.32818 -7.57040 -5.99268 -4.01195 3.31709 3.39122 3.43318 4.42740 4.60381 4.77685 4.80178 4.85407 5.24647 5.36765 5.37677 5.41150 5.45515 5.51809 5.61719 5.72002 5.77206 5.88066 5.93797 5.99209 6.02315 6.08385 6.13685 6.15404 6.29962 6.34612 6.37552 6.41800 6.48776 6.56079 6.64100 6.71325 6.84181 6.97950 7.58199 7.69048 7.86754 7.89181 8.08122 8.45428 9.05845 9.62528 11.12207 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.049313 B = 0.005057 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.666719 B = 5535.202661 C = 5679.025787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.021 3.979 10 C 0.062 3.938 11 N -0.535 5.535 12 C 0.051 3.949 13 C -0.113 4.113 14 C -0.083 4.083 15 H 0.060 0.940 16 C -0.111 4.111 17 C -0.121 4.121 18 C -0.119 4.119 19 C -0.109 4.109 20 C -0.075 4.075 21 H 0.064 0.936 22 C 0.058 3.942 23 H 0.260 0.740 24 H 0.024 0.976 25 H 0.020 0.980 26 H 0.017 0.983 27 H 0.061 0.939 28 H 0.022 0.978 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.024 0.976 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.067 -17.236 0.604 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.064 4.064 11 N -0.260 5.260 12 C -0.077 4.077 13 C -0.151 4.151 14 C -0.102 4.102 15 H 0.079 0.921 16 C -0.149 4.149 17 C -0.158 4.158 18 C -0.156 4.156 19 C -0.146 4.146 20 C -0.094 4.094 21 H 0.082 0.918 22 C -0.070 4.070 23 H 0.069 0.931 24 H 0.043 0.957 25 H 0.038 0.962 26 H 0.035 0.965 27 H 0.079 0.921 28 H 0.041 0.959 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.042 0.958 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.415 -17.176 0.142 17.181 hybrid contribution 0.899 1.080 0.883 1.660 sum 0.484 -16.096 1.025 16.136 Atomic orbital electron populations 1.69978 1.06018 1.26455 1.50905 1.24989 0.94827 0.99176 0.95322 0.86546 0.80112 0.83835 0.77566 1.19773 1.20978 1.21058 1.21237 0.93041 0.91058 1.50552 0.92754 1.19242 0.94126 0.90530 0.97731 1.22296 0.96976 0.88342 0.98807 1.61986 1.11491 1.03288 1.49215 1.22185 0.94150 0.98415 0.92948 1.21745 0.97397 0.93699 1.02238 1.21111 0.95866 0.94793 0.98410 0.92105 1.21487 0.99180 0.97363 0.96823 1.21567 0.97890 1.01399 0.94952 1.21547 0.97247 0.98304 0.98536 1.21512 0.99743 0.97811 0.95527 1.21180 0.96082 0.96456 0.95680 0.91811 1.22114 0.94945 0.91173 0.98777 0.93070 0.95723 0.96172 0.96470 0.92079 0.95925 0.88967 0.92322 0.90678 0.92388 0.92546 0.91464 0.92787 0.92800 0.92487 0.92709 0.89840 0.95794 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.52 -14.87 9.11 -34.45 -0.31 -15.18 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.55 4.22 -27.89 -0.12 0.43 16 10 C 0.06 1.35 5.21 -3.82 -0.02 1.33 16 11 N -0.54 -9.86 4.00 -234.56 -0.94 -10.80 16 12 C 0.05 0.91 4.84 -3.83 -0.02 0.89 16 13 C -0.11 -1.63 4.74 -26.67 -0.13 -1.75 16 14 C -0.08 -1.05 2.47 -90.64 -0.22 -1.28 16 15 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 16 C -0.11 -1.18 5.44 -26.83 -0.15 -1.33 16 17 C -0.12 -1.27 5.66 -26.72 -0.15 -1.42 16 18 C -0.12 -1.28 5.92 -26.74 -0.16 -1.44 16 19 C -0.11 -1.39 4.77 -26.73 -0.13 -1.52 16 20 C -0.08 -0.98 2.56 -90.46 -0.23 -1.21 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 22 C 0.06 0.90 4.87 -3.75 -0.02 0.88 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.02 0.55 6.21 -51.93 -0.32 0.23 16 26 H 0.02 0.37 8.08 -51.93 -0.42 -0.05 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 1.88 5.82 -51.92 -0.30 1.58 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.11 4.88 -51.93 -0.25 0.85 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.76 6.44 -51.93 -0.33 0.43 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.08 1.26 5.91 -51.93 -0.31 0.95 16 40 H 0.02 0.38 8.14 -51.92 -0.42 -0.05 16 41 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 LS Contribution 300.78 15.07 4.53 4.53 Total: -1.00 -29.14 300.78 -9.84 -38.98 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -7.40 Total: -3.24 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -1.75 Total: -20.02 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: -0.20 Total: -37.03 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.14 -9.84 -38.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250889809.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.089 kcal (2) G-P(sol) polarization free energy of solvation -29.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds