Wall clock time and date at job start Sun Mar 29 2020 21:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99837 * 2 1 4 4 H 1.48502 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47335 * 300.00417 * 3 2 1 6 6 H 1.48499 * 109.46844 * 60.00540 * 3 2 1 7 7 C 1.37873 * 119.99573 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99333 * 179.97438 * 7 2 1 9 9 C 1.50689 * 120.00595 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47573 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.47317 * 179.97438 * 10 9 7 12 12 C 1.46823 * 111.00133 * 314.32949 * 11 10 9 13 13 C 1.53067 * 109.59989 * 174.32033 * 12 11 10 14 14 C 1.53050 * 109.20409 * 58.90805 * 13 12 11 15 15 H 1.08998 * 109.42242 * 61.83903 * 14 13 12 16 16 C 1.52819 * 109.73597 * 181.73599 * 14 13 12 17 17 C 1.52992 * 109.63190 * 60.43759 * 16 14 13 18 18 C 1.53026 * 109.35148 * 59.93598 * 17 16 14 19 19 C 1.52953 * 109.41123 * 299.74626 * 18 17 16 20 20 C 1.53041 * 109.59684 * 60.22855 * 19 18 17 21 21 H 1.09002 * 109.60256 * 61.13787 * 20 19 18 22 22 C 1.46865 * 110.99937 * 190.00112 * 11 10 9 23 23 H 0.97003 * 119.99842 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47087 * 59.99902 * 9 7 2 25 25 H 1.09005 * 109.47518 * 300.00222 * 9 7 2 26 26 H 1.09002 * 109.46826 * 59.99948 * 10 9 7 27 27 H 1.08995 * 109.47407 * 300.00335 * 10 9 7 28 28 H 1.09001 * 109.45690 * 294.36619 * 12 11 10 29 29 H 1.09009 * 109.44959 * 54.31241 * 12 11 10 30 30 H 1.09004 * 109.51467 * 178.82361 * 13 12 11 31 31 H 1.09001 * 109.51251 * 298.93357 * 13 12 11 32 32 H 1.08999 * 109.44763 * 300.38320 * 16 14 13 33 33 H 1.09005 * 109.44595 * 180.48266 * 16 14 13 34 34 H 1.09000 * 109.48569 * 299.97068 * 17 16 14 35 35 H 1.08997 * 109.48782 * 179.89938 * 17 16 14 36 36 H 1.08997 * 109.48391 * 59.73065 * 18 17 16 37 37 H 1.09003 * 109.47967 * 179.75163 * 18 17 16 38 38 H 1.08999 * 109.44903 * 180.27259 * 19 18 17 39 39 H 1.09007 * 109.44758 * 300.22003 * 19 18 17 40 40 H 1.09007 * 109.48462 * 66.06273 * 22 11 10 41 41 H 1.08996 * 109.49016 * 305.99954 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 7 1.5107 -4.9343 -0.0012 12 6 0.4192 -4.9112 0.9805 13 6 -0.4101 -6.1918 0.8566 14 6 0.4955 -7.4028 1.0928 15 1 0.9028 -7.3592 2.1029 16 6 -0.3114 -8.6903 0.9293 17 6 -0.8784 -8.7648 -0.4898 18 6 0.2733 -8.7521 -1.4973 19 6 1.0735 -7.4583 -1.3385 20 6 1.6429 -7.3777 0.0798 21 1 2.3124 -8.2202 0.2534 22 6 2.4172 -6.0652 0.2357 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8726 -3.6047 0.8877 27 1 2.8712 -3.6040 -0.8922 28 1 0.8361 -4.8445 1.9855 29 1 -0.2185 -4.0469 0.7941 30 1 -1.2073 -6.1827 1.5999 31 1 -0.8437 -6.2495 -0.1418 32 1 -1.1305 -8.6990 1.6483 33 1 0.3359 -9.5492 1.1069 34 1 -1.5268 -7.9069 -0.6677 35 1 -1.4518 -9.6846 -0.6044 36 1 0.9247 -9.6070 -1.3157 37 1 -0.1282 -8.8096 -2.5091 38 1 1.8911 -7.4465 -2.0592 39 1 0.4206 -6.6036 -1.5161 40 1 2.8235 -6.0003 1.2452 41 1 3.2323 -6.0356 -0.4873 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250889809.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:04 Heat of formation + Delta-G solvation = -45.887382 kcal Electronic energy + Delta-G solvation = -17753.107943 eV Core-core repulsion = 15244.467343 eV Total energy + Delta-G solvation = -2508.640600 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.16624 -37.82190 -35.22679 -33.31590 -32.91186 -30.62199 -30.07448 -26.75931 -24.70726 -24.36880 -23.02894 -21.91131 -21.44067 -18.88088 -18.60098 -16.64119 -16.59571 -16.40008 -15.93355 -15.80708 -14.77220 -14.73643 -14.69535 -14.35794 -13.94599 -13.78024 -13.24784 -13.10642 -12.99677 -12.86069 -12.75067 -12.43916 -12.11766 -11.93968 -11.90659 -11.80498 -11.65393 -11.26591 -11.16343 -10.79591 -10.73241 -10.65169 -10.53247 -9.10141 -8.21820 -6.33160 1.38873 1.39420 1.52810 2.39163 3.11205 3.12272 3.74964 3.79103 3.86256 4.20638 4.28221 4.36823 4.37655 4.41362 4.51752 4.60039 4.60754 4.68776 4.73834 4.81083 4.86859 4.92180 4.98862 5.00355 5.04521 5.10694 5.19888 5.24826 5.34898 5.42845 5.44738 5.46627 5.52250 5.59435 5.66287 5.75918 5.81177 6.10340 6.34620 6.38977 6.83557 7.36029 8.90458 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.049313 B = 0.005057 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.666719 B = 5535.202661 C = 5679.025787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.032 3.968 10 C 0.077 3.923 11 N -0.539 5.539 12 C 0.054 3.946 13 C -0.105 4.105 14 C -0.081 4.081 15 H 0.062 0.938 16 C -0.105 4.105 17 C -0.121 4.121 18 C -0.114 4.114 19 C -0.107 4.107 20 C -0.070 4.070 21 H 0.088 0.912 22 C 0.056 3.944 23 H 0.264 0.736 24 H -0.008 1.008 25 H 0.000 1.000 26 H 0.015 0.985 27 H 0.062 0.938 28 H 0.016 0.984 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.024 0.976 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.845 -18.778 0.816 18.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.005 4.005 10 C -0.050 4.050 11 N -0.264 5.264 12 C -0.074 4.074 13 C -0.143 4.143 14 C -0.099 4.099 15 H 0.080 0.920 16 C -0.143 4.143 17 C -0.159 4.159 18 C -0.152 4.152 19 C -0.144 4.144 20 C -0.089 4.089 21 H 0.106 0.894 22 C -0.072 4.072 23 H 0.073 0.927 24 H 0.011 0.989 25 H 0.018 0.982 26 H 0.033 0.967 27 H 0.080 0.920 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.042 0.958 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.502 -18.740 0.354 18.750 hybrid contribution 0.586 1.556 0.810 1.850 sum 1.088 -17.183 1.164 17.257 Atomic orbital electron populations 1.70112 1.07805 1.27745 1.51491 1.25952 0.95754 1.03294 0.94551 0.85377 0.79022 0.78645 0.77860 1.18640 1.20237 1.20271 1.21655 0.93480 0.92354 1.50876 0.92357 1.19043 0.94244 0.92118 0.95134 1.21973 0.95762 0.88626 0.98665 1.61957 1.11927 1.02787 1.49713 1.22110 0.93873 0.99128 0.92325 1.21684 0.97475 0.92740 1.02383 1.21099 0.95581 0.94921 0.98311 0.91967 1.21452 0.99372 0.96371 0.97068 1.21577 0.97747 1.01739 0.94789 1.21513 0.97275 0.97379 0.98984 1.21458 0.99499 0.98059 0.95419 1.21195 0.96299 0.95477 0.95894 0.89407 1.22249 0.94926 0.91122 0.98897 0.92720 0.98944 0.98217 0.96664 0.92005 0.96541 0.92660 0.91196 0.91174 0.91573 0.90896 0.92825 0.90978 0.91235 0.92089 0.92745 0.92683 0.95782 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.55 -31.93 9.11 25.60 0.23 -31.69 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.75 4.22 29.84 0.13 1.88 16 10 C 0.08 3.45 5.21 86.30 0.45 3.90 16 11 N -0.54 -20.34 4.00 -896.00 -3.58 -23.93 16 12 C 0.05 1.99 4.84 86.34 0.42 2.41 16 13 C -0.11 -3.01 4.74 30.63 0.15 -2.86 16 14 C -0.08 -1.87 2.47 -10.81 -0.03 -1.90 16 15 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 16 C -0.11 -1.91 5.44 30.53 0.17 -1.74 16 17 C -0.12 -2.22 5.66 30.60 0.17 -2.05 16 18 C -0.11 -2.16 5.92 30.59 0.18 -1.98 16 19 C -0.11 -2.59 4.77 30.59 0.15 -2.44 16 20 C -0.07 -1.67 2.56 -10.69 -0.03 -1.70 16 21 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 22 C 0.06 1.68 4.87 86.37 0.42 2.10 16 23 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 24 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 25 H 0.00 -0.02 6.21 -2.38 -0.01 -0.04 16 26 H 0.02 0.68 8.08 -2.39 -0.02 0.66 16 27 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 28 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 2.43 5.82 -2.38 -0.01 2.42 16 30 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.07 2.09 4.88 -2.39 -0.01 2.08 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.05 1.13 6.44 -2.39 -0.02 1.12 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.05 1.65 5.91 -2.38 -0.01 1.64 16 40 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.07 2.11 8.12 -2.39 -0.02 2.09 16 Total: -1.00 -63.88 300.78 2.56 -61.32 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 0.97 Total: 8.44 kcal Atomic # 6 Polarization: -38.35 SS G_CDS: 2.87 Total: -35.48 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -3.30 Total: -81.26 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -63.88 2.56 -61.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250889809.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.429 kcal (2) G-P(sol) polarization free energy of solvation -63.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds