Wall clock time and date at job start Sun Mar 29 2020 22:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47469 * 2 1 4 4 H 1.09002 * 109.47070 * 305.00072 * 3 2 1 5 5 C 1.50701 * 109.47419 * 184.99997 * 3 2 1 6 6 H 1.07998 * 120.00129 * 240.00616 * 5 3 2 7 7 C 1.37880 * 119.99861 * 59.99898 * 5 3 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 N 1.46901 * 109.46860 * 65.00222 * 3 2 1 14 14 C 1.46674 * 111.00191 * 66.04365 * 13 3 2 15 15 C 1.53307 * 108.31630 * 186.38747 * 14 13 3 16 16 C 1.52779 * 108.41082 * 297.19950 * 15 14 13 17 17 C 1.53146 * 110.46006 * 59.82919 * 16 15 14 18 18 H 1.09006 * 111.60184 * 74.26095 * 17 16 15 19 19 C 1.55103 * 106.82954 * 196.72776 * 17 16 15 20 20 C 1.53991 * 106.35834 * 91.13235 * 19 17 16 21 21 C 1.54567 * 106.59216 * 1.45035 * 20 19 17 22 22 C 1.44792 * 110.99860 * 193.17007 * 13 3 2 23 23 H 1.09001 * 109.24467 * 58.16975 * 22 13 3 24 24 H 1.08997 * 109.47151 * 300.00410 * 1 2 3 25 25 H 1.09006 * 109.46918 * 59.99351 * 1 2 3 26 26 H 1.08988 * 109.47178 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47149 * 240.00076 * 2 1 3 28 28 H 1.08997 * 109.47163 * 120.00146 * 2 1 3 29 29 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 30 30 H 1.08998 * 109.69678 * 306.09920 * 14 13 3 31 31 H 1.08996 * 109.69266 * 66.68689 * 14 13 3 32 32 H 1.09001 * 109.67457 * 56.92495 * 15 14 13 33 33 H 1.08996 * 109.67635 * 177.46951 * 15 14 13 34 34 H 1.08999 * 109.30684 * 180.12996 * 16 15 14 35 35 H 1.08991 * 109.30495 * 299.72698 * 16 15 14 36 36 H 1.09001 * 110.07419 * 210.35622 * 19 17 16 37 37 H 1.08997 * 110.07833 * 331.90427 * 19 17 16 38 38 H 1.09002 * 110.03361 * 242.16704 * 20 19 17 39 39 H 1.09007 * 110.07634 * 120.75534 * 20 19 17 40 40 H 1.09000 * 110.60296 * 264.53685 * 21 20 19 41 41 H 1.09004 * 110.73846 * 141.64486 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8799 -1.3811 10 1 6.5538 -0.3521 -0.7598 11 1 6.3836 0.9214 -2.8165 12 1 6.5576 2.0718 -0.6889 13 7 1.6515 2.0992 1.2553 14 6 2.3331 1.4880 2.4012 15 6 1.7668 2.1065 3.6846 16 6 2.0851 3.6008 3.6813 17 6 1.4557 4.2794 2.4611 18 1 0.3772 4.3895 2.5749 19 6 2.1602 5.6515 2.2973 20 6 3.3562 5.4153 1.3564 21 6 3.3138 3.9234 0.9546 22 6 1.8396 3.5324 1.1709 23 1 1.2506 3.9238 0.3415 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3633 -1.0275 -0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 3.8293 -0.0604 -2.9503 30 1 2.1565 0.4124 2.4028 31 1 3.4033 1.6850 2.3398 32 1 0.6870 1.9614 3.7165 33 1 2.2268 1.6352 4.5531 34 1 1.6904 4.0553 4.5899 35 1 3.1657 3.7390 3.6493 36 1 1.4739 6.3742 1.8559 37 1 2.5106 6.0102 3.2651 38 1 4.2889 5.6359 1.8754 39 1 3.2648 6.0434 0.4701 40 1 3.9655 3.3339 1.5994 41 1 3.5945 3.7971 -0.0911 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251364168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:26 Heat of formation + Delta-G solvation = -14.473710 kcal Electronic energy + Delta-G solvation = -18741.291312 eV Core-core repulsion = 16234.012911 eV Total energy + Delta-G solvation = -2507.278401 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.68588 -35.67094 -33.41157 -31.87151 -30.91177 -28.27831 -26.81592 -26.40716 -23.65499 -22.21414 -21.65840 -20.04014 -18.87839 -17.63330 -16.35155 -15.60356 -14.86646 -14.70145 -14.15609 -13.69176 -13.15454 -12.96375 -12.75796 -12.49735 -11.96243 -11.84967 -11.51571 -11.28582 -11.17170 -10.96619 -10.80698 -10.67759 -10.53522 -10.39790 -10.19286 -10.02449 -9.93840 -9.70296 -9.49938 -9.30627 -9.14559 -8.76212 -8.30584 -6.95487 -5.93248 -4.03781 3.28022 3.35834 3.38179 4.42798 4.96037 5.11110 5.21125 5.30050 5.42330 5.59956 5.67903 5.78560 5.99723 6.09161 6.11831 6.20932 6.21959 6.27973 6.35348 6.39981 6.44218 6.48191 6.52611 6.59679 6.67659 6.72435 6.75382 6.87635 6.92826 7.11221 7.18700 7.24883 7.29690 7.46731 7.69971 7.84538 8.08162 8.24956 8.46497 8.63483 9.05212 9.61285 11.05860 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.021698 B = 0.010867 C = 0.008584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.135222 B = 2576.046964 C = 3261.152141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 C 0.218 3.782 4 H 0.035 0.965 5 C -0.539 4.539 6 H 0.067 0.933 7 C 0.066 3.934 8 N -0.887 5.887 9 Si 0.881 3.119 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.535 5.535 14 C 0.068 3.932 15 C -0.120 4.120 16 C -0.107 4.107 17 C -0.085 4.085 18 H 0.073 0.927 19 C -0.120 4.120 20 C -0.129 4.129 21 C -0.140 4.140 22 C 0.110 3.890 23 H 0.065 0.935 24 H 0.047 0.953 25 H 0.037 0.963 26 H 0.023 0.977 27 H 0.091 0.909 28 H 0.032 0.968 29 H 0.259 0.741 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.686 5.777 8.100 10.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.112 3.888 4 H 0.053 0.947 5 C -0.578 4.578 6 H 0.085 0.915 7 C -0.136 4.136 8 N -0.526 5.526 9 Si 0.709 3.291 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.258 5.258 14 C -0.060 4.060 15 C -0.157 4.157 16 C -0.145 4.145 17 C -0.104 4.104 18 H 0.091 0.909 19 C -0.158 4.158 20 C -0.167 4.167 21 C -0.180 4.180 22 C 0.000 4.000 23 H 0.083 0.917 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.042 0.958 27 H 0.109 0.891 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.161 5.606 7.977 10.250 hybrid contribution 2.031 0.134 -0.334 2.063 sum -1.129 5.740 7.643 9.625 Atomic orbital electron populations 1.21703 0.98992 0.98289 1.00515 1.21605 0.92157 0.99365 1.01814 1.19215 0.93098 0.90936 0.85548 0.94707 1.22051 0.92941 1.37293 1.05481 0.91464 1.24903 0.97382 0.95331 0.95961 1.69880 1.34566 1.38664 1.09494 0.86771 0.86788 0.78344 0.77159 1.20852 1.21369 1.20042 1.61072 1.57970 1.01607 1.05104 1.21870 0.96497 0.98387 0.89294 1.21640 1.01123 0.95240 0.97745 1.21533 1.00294 0.95880 0.96807 1.22014 0.98648 0.94209 0.95547 0.90866 1.22405 0.97319 0.97102 0.98998 1.22251 0.97191 0.98837 0.98422 1.23087 0.99145 0.92796 1.02927 1.21471 0.94377 0.88920 0.95226 0.91665 0.93355 0.94366 0.95752 0.89064 0.94953 0.93079 0.91395 0.94374 0.91939 0.92960 0.93385 0.92507 0.92651 0.92584 0.93143 0.92681 0.91778 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.80 37.16 0.36 -2.45 16 2 C -0.11 -2.60 5.17 -26.73 -0.14 -2.74 16 3 C 0.22 5.22 1.66 -68.86 -0.11 5.10 16 4 H 0.04 0.94 7.95 -51.93 -0.41 0.53 16 5 C -0.54 -13.76 5.60 -34.44 -0.19 -13.95 16 6 H 0.07 1.71 4.01 -52.49 -0.21 1.50 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -24.63 11.29 55.43 0.63 -24.01 16 9 Si 0.88 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.54 -11.00 3.91 -220.46 -0.86 -11.87 16 14 C 0.07 1.31 4.64 -3.79 -0.02 1.29 16 15 C -0.12 -1.90 6.11 -26.69 -0.16 -2.06 16 16 C -0.11 -1.61 4.72 -26.77 -0.13 -1.74 16 17 C -0.09 -1.34 3.55 -88.94 -0.32 -1.66 16 18 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 19 C -0.12 -1.70 6.14 -25.10 -0.15 -1.86 16 20 C -0.13 -2.03 6.72 -25.39 -0.17 -2.20 16 21 C -0.14 -2.70 3.79 -25.36 -0.10 -2.80 16 22 C 0.11 2.09 2.47 -67.80 -0.17 1.92 16 23 H 0.07 1.31 8.03 -51.93 -0.42 0.89 16 24 H 0.05 0.95 7.75 -51.93 -0.40 0.55 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.02 0.45 8.14 -51.94 -0.42 0.02 16 27 H 0.09 2.40 5.95 -51.92 -0.31 2.09 16 28 H 0.03 0.75 6.23 -51.93 -0.32 0.42 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.07 1.37 6.14 -51.93 -0.32 1.05 16 31 H 0.04 0.80 5.17 -51.93 -0.27 0.53 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.89 7.14 -51.93 -0.37 0.52 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.73 7.76 -51.93 -0.40 0.32 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 40 H 0.06 1.31 4.87 -51.93 -0.25 1.06 16 41 H 0.08 1.83 6.87 -51.93 -0.36 1.48 16 LS Contribution 291.19 15.07 4.39 4.39 Total: -1.00 -25.93 291.19 -9.24 -35.17 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.99 Total: 1.90 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -1.39 Total: -21.48 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: -0.24 Total: -35.87 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -25.93 -9.24 -35.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251364168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.697 kcal (2) G-P(sol) polarization free energy of solvation -25.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds