Wall clock time and date at job start Sun Mar 29 2020 22:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47469 * 2 1 4 4 H 1.09002 * 109.47070 * 305.00072 * 3 2 1 5 5 C 1.50701 * 109.47419 * 184.99997 * 3 2 1 6 6 H 1.07998 * 120.00129 * 240.00616 * 5 3 2 7 7 C 1.37880 * 119.99861 * 59.99898 * 5 3 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 N 1.46901 * 109.46860 * 65.00222 * 3 2 1 14 14 C 1.46674 * 111.00191 * 66.04365 * 13 3 2 15 15 C 1.53307 * 108.31630 * 186.38747 * 14 13 3 16 16 C 1.52779 * 108.41082 * 297.19950 * 15 14 13 17 17 C 1.53146 * 110.46006 * 59.82919 * 16 15 14 18 18 H 1.09006 * 111.60184 * 74.26095 * 17 16 15 19 19 C 1.55103 * 106.82954 * 196.72776 * 17 16 15 20 20 C 1.53991 * 106.35834 * 91.13235 * 19 17 16 21 21 C 1.54567 * 106.59216 * 1.45035 * 20 19 17 22 22 C 1.44792 * 110.99860 * 193.17007 * 13 3 2 23 23 H 1.09001 * 109.24467 * 58.16975 * 22 13 3 24 24 H 1.08997 * 109.47151 * 300.00410 * 1 2 3 25 25 H 1.09006 * 109.46918 * 59.99351 * 1 2 3 26 26 H 1.08988 * 109.47178 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47149 * 240.00076 * 2 1 3 28 28 H 1.08997 * 109.47163 * 120.00146 * 2 1 3 29 29 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 30 30 H 1.08998 * 109.69678 * 306.09920 * 14 13 3 31 31 H 1.08996 * 109.69266 * 66.68689 * 14 13 3 32 32 H 1.09001 * 109.67457 * 56.92495 * 15 14 13 33 33 H 1.08996 * 109.67635 * 177.46951 * 15 14 13 34 34 H 1.08999 * 109.30684 * 180.12996 * 16 15 14 35 35 H 1.08991 * 109.30495 * 299.72698 * 16 15 14 36 36 H 1.09001 * 110.07419 * 210.35622 * 19 17 16 37 37 H 1.08997 * 110.07833 * 331.90427 * 19 17 16 38 38 H 1.09002 * 110.03361 * 242.16704 * 20 19 17 39 39 H 1.09007 * 110.07634 * 120.75534 * 20 19 17 40 40 H 1.09000 * 110.60296 * 264.53685 * 21 20 19 41 41 H 1.09004 * 110.73846 * 141.64486 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8799 -1.3811 10 1 6.5538 -0.3521 -0.7598 11 1 6.3836 0.9214 -2.8165 12 1 6.5576 2.0718 -0.6889 13 7 1.6515 2.0992 1.2553 14 6 2.3331 1.4880 2.4012 15 6 1.7668 2.1065 3.6846 16 6 2.0851 3.6008 3.6813 17 6 1.4557 4.2794 2.4611 18 1 0.3772 4.3895 2.5749 19 6 2.1602 5.6515 2.2973 20 6 3.3562 5.4153 1.3564 21 6 3.3138 3.9234 0.9546 22 6 1.8396 3.5324 1.1709 23 1 1.2506 3.9238 0.3415 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3633 -1.0275 -0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 3.8293 -0.0604 -2.9503 30 1 2.1565 0.4124 2.4028 31 1 3.4033 1.6850 2.3398 32 1 0.6870 1.9614 3.7165 33 1 2.2268 1.6352 4.5531 34 1 1.6904 4.0553 4.5899 35 1 3.1657 3.7390 3.6493 36 1 1.4739 6.3742 1.8559 37 1 2.5106 6.0102 3.2651 38 1 4.2889 5.6359 1.8754 39 1 3.2648 6.0434 0.4701 40 1 3.9655 3.3339 1.5994 41 1 3.5945 3.7971 -0.0911 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251364168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:25 Heat of formation + Delta-G solvation = -27.860476 kcal Electronic energy + Delta-G solvation = -18741.871806 eV Core-core repulsion = 16234.012911 eV Total energy + Delta-G solvation = -2507.858895 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.17531 -37.33358 -34.95405 -33.68372 -32.60877 -29.68169 -28.52755 -28.03044 -25.32594 -23.91741 -23.08548 -21.61514 -20.41679 -19.14380 -18.27899 -17.20214 -16.49894 -16.40658 -15.65881 -15.12589 -14.93613 -14.53975 -14.22876 -14.12683 -13.43787 -13.39872 -13.10549 -13.03164 -12.98502 -12.59238 -12.53786 -12.18981 -12.09391 -11.93580 -11.74492 -11.69682 -11.34568 -11.32760 -11.17703 -10.83915 -10.73530 -10.56517 -10.36193 -8.72524 -7.95766 -6.14495 1.35095 1.38024 1.45203 2.42105 3.21518 3.44595 3.79666 3.94353 4.06914 4.30596 4.40815 4.44389 4.57077 4.64861 4.70964 4.79300 4.81443 4.85836 4.90578 4.94185 4.95834 5.13247 5.15526 5.18096 5.21135 5.25630 5.34568 5.41557 5.43545 5.46939 5.53991 5.57994 5.64012 5.71434 5.78423 5.86372 6.15094 6.31394 6.52372 6.93577 7.05590 7.53153 8.98423 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.021698 B = 0.010867 C = 0.008584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.135222 B = 2576.046964 C = 3261.152141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.107 4.107 3 C 0.225 3.775 4 H -0.004 1.004 5 C -0.534 4.534 6 H 0.066 0.934 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 0.936 3.064 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.273 1.273 13 N -0.532 5.532 14 C 0.069 3.931 15 C -0.111 4.111 16 C -0.105 4.105 17 C -0.080 4.080 18 H 0.085 0.915 19 C -0.111 4.111 20 C -0.124 4.124 21 C -0.136 4.136 22 C 0.102 3.898 23 H 0.046 0.954 24 H 0.057 0.943 25 H 0.029 0.971 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.031 0.969 29 H 0.257 0.743 30 H 0.055 0.945 31 H 0.017 0.983 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.049 0.951 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.018 7.048 10.500 13.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.145 4.145 3 C 0.118 3.882 4 H 0.014 0.986 5 C -0.573 4.573 6 H 0.084 0.916 7 C -0.181 4.181 8 N -0.556 5.556 9 Si 0.763 3.237 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.254 5.254 14 C -0.059 4.059 15 C -0.149 4.149 16 C -0.142 4.142 17 C -0.099 4.099 18 H 0.103 0.897 19 C -0.149 4.149 20 C -0.162 4.162 21 C -0.175 4.175 22 C -0.008 4.008 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.035 0.965 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.491 6.888 10.396 12.950 hybrid contribution 2.129 -0.261 -1.098 2.409 sum -1.362 6.627 9.298 11.498 Atomic orbital electron populations 1.21555 0.96481 0.99633 1.00538 1.21451 0.94381 0.98511 1.00168 1.18957 0.91980 0.91111 0.86131 0.98650 1.22285 0.94005 1.36025 1.05032 0.91636 1.25556 1.00932 0.95589 0.96041 1.70013 1.35837 1.39812 1.09944 0.85902 0.82635 0.78284 0.76897 1.20529 1.21417 1.19736 1.61021 1.57864 1.02565 1.03970 1.21884 0.95397 0.98004 0.90634 1.21591 1.01319 0.95942 0.96069 1.21537 0.99954 0.95112 0.97624 1.21996 0.99658 0.94520 0.93690 0.89661 1.22366 0.96400 0.96395 0.99729 1.22207 0.98924 0.95790 0.99303 1.22867 0.98954 0.95625 1.00043 1.21590 0.93964 0.88133 0.97070 0.93547 0.92369 0.95163 0.93730 0.92162 0.94992 0.93358 0.92615 0.96482 0.91382 0.90839 0.90202 0.93197 0.91174 0.90227 0.91986 0.92349 0.93284 0.93916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.08 9.80 71.98 0.71 -4.37 16 2 C -0.11 -5.13 5.17 30.59 0.16 -4.97 16 3 C 0.23 11.19 1.66 44.17 0.07 11.26 16 4 H 0.00 -0.25 7.95 -2.39 -0.02 -0.27 16 5 C -0.53 -28.28 5.60 25.60 0.14 -28.14 16 6 H 0.07 3.45 4.01 -2.91 -0.01 3.43 16 7 C 0.02 0.96 5.29 84.66 0.45 1.41 16 8 N -0.92 -52.83 11.29 21.45 0.24 -52.59 16 9 Si 0.94 44.02 29.54 68.60 2.03 46.05 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 11 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 13 N -0.53 -22.03 3.91 -851.40 -3.33 -25.36 16 14 C 0.07 2.62 4.64 86.45 0.40 3.02 16 15 C -0.11 -3.22 6.11 30.62 0.19 -3.03 16 16 C -0.10 -2.76 4.72 30.57 0.14 -2.61 16 17 C -0.08 -2.28 3.55 -9.70 -0.03 -2.31 16 18 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 19 C -0.11 -2.75 6.14 31.65 0.19 -2.55 16 20 C -0.12 -3.69 6.72 31.46 0.21 -3.48 16 21 C -0.14 -5.27 3.79 31.48 0.12 -5.15 16 22 C 0.10 3.86 2.47 45.98 0.11 3.98 16 23 H 0.05 1.90 8.03 -2.39 -0.02 1.88 16 24 H 0.06 2.23 7.75 -2.39 -0.02 2.21 16 25 H 0.03 1.24 8.14 -2.38 -0.02 1.23 16 26 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 3.29 5.95 -2.38 -0.01 3.28 16 28 H 0.03 1.50 6.23 -2.39 -0.01 1.49 16 29 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.06 2.23 6.14 -2.39 -0.01 2.21 16 31 H 0.02 0.72 5.17 -2.39 -0.01 0.71 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.05 1.40 7.14 -2.39 -0.02 1.38 16 36 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.66 7.76 -2.39 -0.02 1.64 16 38 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 39 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.05 2.03 4.87 -2.39 -0.01 2.02 16 41 H 0.04 1.96 6.87 -2.39 -0.02 1.95 16 Total: -1.00 -57.71 291.19 2.79 -54.92 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.99 Total: 13.93 kcal Atomic # 6 Polarization: -39.82 SS G_CDS: 2.86 Total: -36.95 kcal Atomic # 7 Polarization: -74.86 SS G_CDS: -3.09 Total: -77.95 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -57.71 2.79 -54.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251364168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.058 kcal (2) G-P(sol) polarization free energy of solvation -57.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds