Wall clock time and date at job start Sun Mar 29 2020 22:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99765 * 2 1 4 4 H 1.48501 * 109.47290 * 274.99133 * 3 2 1 5 5 H 1.48503 * 109.47352 * 34.99087 * 3 2 1 6 6 H 1.48498 * 109.47058 * 154.98794 * 3 2 1 7 7 C 1.37873 * 120.00400 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00532 * 189.54830 * 7 2 1 9 9 C 1.50702 * 119.99618 * 9.55221 * 7 2 1 10 10 C 1.53003 * 109.46933 * 185.42739 * 9 7 2 11 11 C 1.53002 * 109.46945 * 299.99580 * 10 9 7 12 12 C 1.53005 * 109.47271 * 300.00268 * 11 10 9 13 13 N 1.46894 * 109.47416 * 180.02562 * 12 11 10 14 14 C 1.46847 * 110.99722 * 299.21158 * 13 12 11 15 15 C 1.53037 * 109.52258 * 174.16054 * 14 13 12 16 16 C 1.53126 * 109.27928 * 59.17744 * 15 14 13 17 17 C 1.53116 * 109.15637 * 302.34425 * 16 15 14 18 18 C 1.46846 * 111.00400 * 175.00026 * 13 12 11 19 19 C 1.53001 * 109.47012 * 59.99840 * 12 11 10 20 20 C 1.52996 * 109.47360 * 65.42367 * 9 7 2 21 21 H 0.96998 * 119.99661 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47144 * 305.42218 * 9 7 2 23 23 H 1.08999 * 109.46753 * 180.02562 * 10 9 7 24 24 H 1.08993 * 109.47273 * 59.99485 * 10 9 7 25 25 H 1.08998 * 109.46901 * 59.99921 * 11 10 9 26 26 H 1.08996 * 109.46907 * 180.02562 * 11 10 9 27 27 H 1.09008 * 109.46989 * 300.00212 * 12 11 10 28 28 H 1.09006 * 109.46062 * 294.17209 * 14 13 12 29 29 H 1.08992 * 109.46563 * 54.14443 * 14 13 12 30 30 H 1.09001 * 109.50393 * 299.23885 * 15 14 13 31 31 H 1.08997 * 109.53639 * 179.14012 * 15 14 13 32 32 H 1.08998 * 109.52029 * 182.43900 * 16 15 14 33 33 H 1.08998 * 109.57541 * 62.28328 * 16 15 14 34 34 H 1.08994 * 109.50885 * 297.71273 * 17 16 15 35 35 H 1.09002 * 109.49856 * 177.59127 * 17 16 15 36 36 H 1.09007 * 109.46144 * 305.85745 * 18 13 12 37 37 H 1.09002 * 109.46006 * 65.81698 * 18 13 12 38 38 H 1.09005 * 109.47326 * 180.02562 * 19 12 11 39 39 H 1.08998 * 109.47440 * 60.00174 * 19 12 11 40 40 H 1.09008 * 109.47082 * 180.02562 * 20 9 7 41 41 H 1.09001 * 109.47366 * 299.99580 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3912 2.1074 -1.3948 5 1 1.5033 2.6200 0.8029 6 1 3.5954 1.4121 0.5920 7 6 2.0047 -1.1940 0.0005 8 1 3.0734 -1.2004 0.1557 9 6 1.2668 -2.4901 -0.2155 10 6 2.2326 -3.6630 -0.0345 11 6 3.3703 -3.5482 -1.0512 12 6 2.7931 -3.5766 -2.4679 13 7 3.8854 -3.4671 -3.4439 14 6 4.6170 -2.2050 -3.2755 15 6 5.8314 -2.1897 -4.2066 16 6 5.3593 -2.3382 -5.6557 17 6 4.5591 -3.6363 -5.7929 18 6 3.3816 -3.6097 -4.8159 19 6 1.8273 -2.4038 -2.6487 20 6 0.6897 -2.5185 -1.6321 21 1 -0.4849 0.8401 -0.0004 22 1 0.4563 -2.5719 0.5088 23 1 1.6990 -4.6004 -0.1912 24 1 2.6438 -3.6427 0.9746 25 1 3.9039 -2.6107 -0.8950 26 1 4.0580 -4.3840 -0.9226 27 1 2.2594 -4.5142 -2.6241 28 1 3.9611 -1.3696 -3.5203 29 1 4.9508 -2.1139 -2.2419 30 1 6.4946 -3.0168 -3.9534 31 1 6.3660 -1.2467 -4.0929 32 1 6.2238 -2.3712 -6.3188 33 1 4.7277 -1.4909 -5.9227 34 1 5.2023 -4.4862 -5.5647 35 1 4.1840 -3.7265 -6.8124 36 1 2.8179 -4.5389 -4.9010 37 1 2.7314 -2.7677 -5.0534 38 1 1.4158 -2.4242 -3.6579 39 1 2.3609 -1.4663 -2.4925 40 1 0.1556 -3.4559 -1.7882 41 1 0.0016 -1.6830 -1.7610 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259889169.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:19 Heat of formation + Delta-G solvation = -27.430226 kcal Electronic energy + Delta-G solvation = -18353.496678 eV Core-core repulsion = 15845.656440 eV Total energy + Delta-G solvation = -2507.840238 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.40533 -36.78257 -33.35442 -31.69350 -30.65933 -29.55051 -28.05564 -24.82931 -23.66022 -22.87867 -21.52190 -20.44673 -19.28042 -18.28008 -15.89041 -15.68700 -14.78265 -14.49688 -14.24881 -13.99902 -13.66743 -13.38153 -13.08571 -12.85395 -12.57984 -12.03763 -11.68833 -11.45067 -11.20890 -11.07322 -10.95769 -10.86000 -10.63509 -10.52638 -10.41362 -10.23404 -10.04693 -9.81245 -9.68632 -9.10699 -8.88045 -8.63959 -8.24715 -7.65574 -5.97813 -3.96742 3.29915 3.38194 3.40442 4.34082 4.46635 4.99458 5.04824 5.10484 5.35297 5.42912 5.63350 5.67098 5.74076 5.77715 5.83651 5.97987 6.02121 6.07781 6.11021 6.19290 6.30470 6.35341 6.36811 6.45667 6.53116 6.55617 6.60333 6.74164 6.78286 6.91289 7.12970 7.16647 7.36355 7.48771 7.62489 7.67104 7.78906 7.97360 8.07687 8.52230 9.06142 9.64945 11.11789 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025257 B = 0.008557 C = 0.007382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.323422 B = 3271.344729 C = 3791.958966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.877 3.123 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.501 4.501 8 H 0.055 0.945 9 C 0.041 3.959 10 C -0.106 4.106 11 C -0.098 4.098 12 C 0.091 3.909 13 N -0.534 5.534 14 C 0.049 3.951 15 C -0.116 4.116 16 C -0.120 4.120 17 C -0.114 4.114 18 C 0.053 3.947 19 C -0.133 4.133 20 C -0.097 4.097 21 H 0.258 0.742 22 H 0.030 0.970 23 H 0.033 0.967 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.038 0.962 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.034 0.966 38 H 0.031 0.969 39 H 0.073 0.927 40 H 0.017 0.983 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.681 -5.708 -9.044 13.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.705 3.295 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.539 4.539 8 H 0.073 0.927 9 C 0.023 3.977 10 C -0.144 4.144 11 C -0.136 4.136 12 C -0.016 4.016 13 N -0.257 5.257 14 C -0.079 4.079 15 C -0.154 4.154 16 C -0.158 4.158 17 C -0.152 4.152 18 C -0.075 4.075 19 C -0.171 4.171 20 C -0.136 4.136 21 H 0.068 0.932 22 H 0.049 0.951 23 H 0.051 0.949 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.092 0.908 40 H 0.036 0.964 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.867 -5.975 -8.959 13.336 hybrid contribution -0.231 1.734 -0.243 1.767 sum 7.636 -4.241 -9.202 12.687 Atomic orbital electron populations 1.69966 1.05876 1.26207 1.50840 1.24932 0.94655 0.98743 0.95469 0.86810 0.80255 0.84485 0.77918 1.20883 1.21398 1.19870 1.21133 0.93860 0.90801 1.48121 0.92673 1.18702 0.94023 0.92221 0.92745 1.21544 0.97027 0.98492 0.97359 1.21481 0.97870 1.01174 0.93062 1.21697 0.90062 0.97949 0.91910 1.62241 1.26031 1.34371 1.03074 1.22131 0.94695 0.90866 1.00177 1.21600 0.97855 1.01418 0.94551 1.21569 0.99435 0.97849 0.96963 1.21565 0.97457 0.98136 0.98051 1.22034 0.95884 1.00562 0.89052 1.22023 0.98248 0.99559 0.97304 1.21378 0.96437 0.98742 0.97023 0.93231 0.95142 0.94856 0.93350 0.91113 0.93795 0.91536 0.94380 0.90123 0.91540 0.92088 0.92447 0.92469 0.91482 0.92239 0.91421 0.94780 0.95058 0.90816 0.96409 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.56 12.16 55.43 0.67 -24.88 16 2 C 0.06 1.73 5.20 -17.82 -0.09 1.63 16 3 Si 0.88 21.19 29.55 -169.99 -5.02 16.17 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.50 -13.28 6.63 -34.44 -0.23 -13.51 16 8 H 0.06 1.46 6.53 -52.49 -0.34 1.11 16 9 C 0.04 1.02 2.45 -91.77 -0.22 0.79 16 10 C -0.11 -2.21 5.42 -26.73 -0.14 -2.35 16 11 C -0.10 -1.88 4.78 -26.73 -0.13 -2.00 16 12 C 0.09 1.67 2.23 -67.71 -0.15 1.52 16 13 N -0.53 -8.70 4.64 -226.69 -1.05 -9.76 16 14 C 0.05 0.80 4.64 -3.83 -0.02 0.78 16 15 C -0.12 -1.54 6.09 -26.65 -0.16 -1.70 16 16 C -0.12 -1.45 6.00 -26.61 -0.16 -1.61 16 17 C -0.11 -1.38 6.09 -26.65 -0.16 -1.54 16 18 C 0.05 0.77 5.02 -3.84 -0.02 0.75 16 19 C -0.13 -2.73 4.29 -26.73 -0.11 -2.84 16 20 C -0.10 -2.25 5.29 -26.73 -0.14 -2.39 16 21 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 22 H 0.03 0.83 8.09 -51.93 -0.42 0.41 16 23 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.07 1.45 4.67 -51.93 -0.24 1.21 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 1.21 8.08 -51.92 -0.42 0.79 16 28 H 0.04 0.68 6.62 -51.93 -0.34 0.33 16 29 H 0.08 1.38 6.03 -51.93 -0.31 1.07 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.94 8.08 -51.92 -0.42 0.52 16 37 H 0.03 0.53 6.73 -51.93 -0.35 0.18 16 38 H 0.03 0.61 6.65 -51.93 -0.35 0.26 16 39 H 0.07 1.68 5.60 -51.93 -0.29 1.39 16 40 H 0.02 0.38 8.14 -51.92 -0.42 -0.05 16 41 H 0.07 1.81 6.90 -51.93 -0.36 1.45 16 LS Contribution 295.54 15.07 4.45 4.45 Total: -1.00 -27.28 295.54 -9.90 -37.18 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -7.21 Total: -0.68 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -1.75 Total: -22.48 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: -0.38 Total: -34.64 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.28 -9.90 -37.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889169.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.749 kcal (2) G-P(sol) polarization free energy of solvation -27.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds