Wall clock time and date at job start Sun Mar 29 2020 21:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00066 * 2 1 4 4 H 1.48495 * 109.47046 * 269.99979 * 3 2 1 5 5 H 1.48496 * 109.47059 * 30.00109 * 3 2 1 6 6 H 1.48497 * 109.47235 * 150.00153 * 3 2 1 7 7 C 1.37879 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99711 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00007 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47272 * 179.97438 * 9 7 2 11 11 C 1.53119 * 109.52412 * 175.00079 * 10 9 7 12 12 C 1.53040 * 109.27917 * 177.55898 * 11 10 9 13 13 N 1.46842 * 109.52651 * 300.82804 * 12 11 10 14 14 C 1.46899 * 111.00041 * 185.83838 * 13 12 11 15 15 C 1.52997 * 109.47254 * 169.99637 * 14 13 12 16 16 C 1.52992 * 109.47482 * 179.97438 * 15 14 13 17 17 C 1.52995 * 117.50322 * 243.62346 * 16 15 14 18 18 C 1.52999 * 60.00223 * 252.50829 * 17 16 15 19 19 C 1.46843 * 111.20263 * 61.73690 * 13 12 11 20 20 C 1.53043 * 109.52446 * 298.26417 * 19 13 12 21 21 H 0.96997 * 119.99851 * 359.97438 * 1 2 3 22 22 H 1.09008 * 109.46948 * 60.00450 * 9 7 2 23 23 H 1.09002 * 109.47617 * 300.00359 * 9 7 2 24 24 H 1.09007 * 109.52135 * 54.87870 * 10 9 7 25 25 H 1.09002 * 109.50021 * 57.62626 * 11 10 9 26 26 H 1.09003 * 109.53874 * 297.52271 * 11 10 9 27 27 H 1.08998 * 109.46221 * 180.80268 * 12 11 10 28 28 H 1.09002 * 109.44829 * 60.83620 * 12 11 10 29 29 H 1.09002 * 109.47043 * 289.99708 * 14 13 12 30 30 H 1.09001 * 109.47354 * 49.99769 * 14 13 12 31 31 H 1.09002 * 109.47153 * 300.00004 * 15 14 13 32 32 H 1.08998 * 109.47533 * 59.99633 * 15 14 13 33 33 H 1.09005 * 115.54879 * 29.32806 * 16 15 14 34 34 H 1.09004 * 117.49787 * 359.97438 * 17 16 15 35 35 H 1.09002 * 117.50423 * 145.01738 * 17 16 15 36 36 H 1.09000 * 117.49408 * 252.50795 * 18 17 16 37 37 H 1.09004 * 117.51923 * 107.47935 * 18 17 16 38 38 H 1.09004 * 109.46019 * 58.27642 * 19 13 12 39 39 H 1.08999 * 109.46883 * 178.24462 * 19 13 12 40 40 H 1.09007 * 109.49669 * 299.23395 * 20 19 13 41 41 H 1.09001 * 109.53519 * 179.13897 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4851 -4.9853 0.1239 12 6 2.4793 -6.1471 0.0608 13 7 3.2089 -6.1001 -1.2126 14 6 4.0728 -7.2780 -1.3682 15 6 4.6206 -7.3237 -2.7960 16 6 5.5208 -8.5501 -2.9579 17 6 7.0006 -8.3054 -3.2595 18 6 6.0751 -8.8403 -4.3542 19 6 3.9842 -4.8590 -1.3350 20 6 3.0350 -3.6587 -1.3136 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8904 23 1 0.6246 -2.5571 0.8896 24 1 2.9319 -3.5552 0.8380 25 1 0.7702 -5.0734 -0.6941 26 1 0.9544 -5.0118 1.0756 27 1 1.9398 -7.0912 0.1358 28 1 3.1855 -6.0658 0.8872 29 1 4.9016 -7.2164 -0.6629 30 1 3.4948 -8.1810 -1.1717 31 1 3.7918 -7.3853 -3.5013 32 1 5.1985 -6.4208 -2.9927 33 1 5.2696 -9.4040 -2.3287 34 1 7.3328 -7.2706 -3.3431 35 1 7.7235 -8.9982 -2.8286 36 1 6.1891 -9.8851 -4.6433 37 1 5.7981 -8.1576 -5.1575 38 1 4.6834 -4.7840 -0.5021 39 1 4.5377 -4.8675 -2.2740 40 1 2.3444 -3.7260 -2.1543 41 1 3.6115 -2.7367 -1.3891 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259889310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:38 Heat of formation + Delta-G solvation = -2.891775 kcal Electronic energy + Delta-G solvation = -16934.950624 eV Core-core repulsion = 14428.174453 eV Total energy + Delta-G solvation = -2506.776171 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.93505 -37.54883 -34.62650 -32.43455 -30.51616 -29.96656 -27.31559 -24.23822 -22.82442 -22.58288 -22.08219 -20.58300 -20.28951 -18.86072 -16.22824 -15.83015 -15.69137 -15.00301 -14.47827 -14.08262 -13.94379 -13.63177 -13.30144 -13.03402 -12.33707 -12.14800 -11.79626 -11.75189 -11.58799 -11.40895 -11.16171 -11.03209 -10.74409 -10.61058 -10.57222 -10.37641 -10.17710 -9.98260 -9.88381 -9.47414 -8.99238 -8.83421 -8.29615 -8.02402 -5.94441 -3.95744 3.34388 3.40718 3.43726 3.61827 4.07050 4.49930 4.62360 4.74999 4.78166 5.07472 5.25033 5.36390 5.40911 5.43719 5.44151 5.55292 5.61780 5.64838 5.73363 5.78745 5.88953 5.92093 5.95367 6.01927 6.12089 6.16636 6.26298 6.33206 6.50747 6.63618 6.72836 7.03291 7.15722 7.24553 7.41832 7.45750 7.74320 7.91426 8.06777 8.50073 9.10939 9.67528 11.16960 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.037906 B = 0.004404 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.482610 B = 6356.836668 C = 6859.752322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.082 4.082 11 C -0.112 4.112 12 C 0.060 3.940 13 N -0.538 5.538 14 C 0.059 3.941 15 C -0.087 4.087 16 C -0.149 4.149 17 C -0.183 4.183 18 C -0.182 4.182 19 C 0.054 3.946 20 C -0.100 4.100 21 H 0.259 0.741 22 H 0.016 0.984 23 H 0.014 0.986 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.026 0.974 29 H 0.029 0.971 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.025 0.975 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.941 -16.313 -4.563 19.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.150 4.150 12 C -0.068 4.068 13 N -0.263 5.263 14 C -0.069 4.069 15 C -0.124 4.124 16 C -0.168 4.168 17 C -0.220 4.220 18 C -0.219 4.219 19 C -0.074 4.074 20 C -0.138 4.138 21 H 0.069 0.931 22 H 0.035 0.965 23 H 0.032 0.968 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.044 0.956 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.440 -16.193 -4.926 19.380 hybrid contribution 1.078 0.944 0.682 1.587 sum 10.518 -15.249 -4.244 19.004 Atomic orbital electron populations 1.69964 1.06022 1.26421 1.51200 1.25019 0.94798 0.99114 0.95578 0.86655 0.79863 0.83798 0.78046 1.20725 1.21323 1.19972 1.21263 0.92918 0.91064 1.49973 0.92736 1.19117 0.93632 0.91056 0.97096 1.21234 0.97887 0.94776 0.96133 1.21692 0.97551 0.94300 1.01432 1.22089 0.96271 0.99326 0.89092 1.61935 1.28095 1.01842 1.34401 1.22037 0.95022 0.93811 0.96029 1.21198 0.98372 0.95630 0.97224 1.22311 0.95118 1.00381 0.98984 1.23038 0.93168 1.02204 1.03629 1.22951 1.04690 1.01781 0.92470 1.22247 0.95319 0.90093 0.99715 1.21548 0.97865 0.95524 0.98819 0.93118 0.96518 0.96792 0.93128 0.91618 0.92203 0.91741 0.95546 0.95324 0.91246 0.90711 0.91640 0.87994 0.88826 0.89143 0.89058 0.88767 0.95639 0.91492 0.91900 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -14.50 8.44 -34.44 -0.29 -14.79 16 8 H 0.05 1.50 7.08 -52.49 -0.37 1.12 16 9 C 0.03 0.73 4.45 -27.89 -0.12 0.60 16 10 C -0.08 -1.70 2.20 -90.50 -0.20 -1.90 16 11 C -0.11 -2.00 5.38 -26.65 -0.14 -2.14 16 12 C 0.06 0.91 5.46 -3.84 -0.02 0.89 16 13 N -0.54 -8.06 4.66 -234.67 -1.09 -9.15 16 14 C 0.06 0.72 4.92 -3.83 -0.02 0.70 16 15 C -0.09 -0.95 5.42 -26.74 -0.15 -1.09 16 16 C -0.15 -1.39 5.74 -90.63 -0.52 -1.91 16 17 C -0.18 -1.59 10.18 -26.73 -0.27 -1.87 16 18 C -0.18 -1.54 10.25 -26.73 -0.27 -1.81 16 19 C 0.05 0.85 5.29 -3.83 -0.02 0.83 16 20 C -0.10 -1.92 5.15 -26.65 -0.14 -2.06 16 21 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 22 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 23 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 0.87 8.02 -51.93 -0.42 0.45 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 30 H 0.07 0.78 7.99 -51.93 -0.41 0.37 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.75 6.16 -51.93 -0.32 0.43 16 33 H 0.10 0.89 8.08 -51.93 -0.42 0.47 16 34 H 0.09 0.83 8.03 -51.93 -0.42 0.41 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.97 6.21 -51.93 -0.32 0.65 16 40 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 41 H 0.07 1.46 7.05 -51.93 -0.37 1.09 16 LS Contribution 319.90 15.07 4.82 4.82 Total: -1.00 -29.54 319.90 -10.50 -40.04 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -7.68 Total: -2.98 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -2.26 Total: -23.05 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: -0.36 Total: -35.63 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.54 -10.50 -40.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.150 kcal (2) G-P(sol) polarization free energy of solvation -29.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds