Wall clock time and date at job start Sun Mar 29 2020 21:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00066 * 2 1 4 4 H 1.48495 * 109.47046 * 269.99979 * 3 2 1 5 5 H 1.48496 * 109.47059 * 30.00109 * 3 2 1 6 6 H 1.48497 * 109.47235 * 150.00153 * 3 2 1 7 7 C 1.37879 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99711 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00007 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47272 * 179.97438 * 9 7 2 11 11 C 1.53119 * 109.52412 * 175.00079 * 10 9 7 12 12 C 1.53040 * 109.27917 * 177.55898 * 11 10 9 13 13 N 1.46842 * 109.52651 * 300.82804 * 12 11 10 14 14 C 1.46899 * 111.00041 * 185.83838 * 13 12 11 15 15 C 1.52997 * 109.47254 * 169.99637 * 14 13 12 16 16 C 1.52992 * 109.47482 * 179.97438 * 15 14 13 17 17 C 1.52995 * 117.50322 * 243.62346 * 16 15 14 18 18 C 1.52999 * 60.00223 * 252.50829 * 17 16 15 19 19 C 1.46843 * 111.20263 * 61.73690 * 13 12 11 20 20 C 1.53043 * 109.52446 * 298.26417 * 19 13 12 21 21 H 0.96997 * 119.99851 * 359.97438 * 1 2 3 22 22 H 1.09008 * 109.46948 * 60.00450 * 9 7 2 23 23 H 1.09002 * 109.47617 * 300.00359 * 9 7 2 24 24 H 1.09007 * 109.52135 * 54.87870 * 10 9 7 25 25 H 1.09002 * 109.50021 * 57.62626 * 11 10 9 26 26 H 1.09003 * 109.53874 * 297.52271 * 11 10 9 27 27 H 1.08998 * 109.46221 * 180.80268 * 12 11 10 28 28 H 1.09002 * 109.44829 * 60.83620 * 12 11 10 29 29 H 1.09002 * 109.47043 * 289.99708 * 14 13 12 30 30 H 1.09001 * 109.47354 * 49.99769 * 14 13 12 31 31 H 1.09002 * 109.47153 * 300.00004 * 15 14 13 32 32 H 1.08998 * 109.47533 * 59.99633 * 15 14 13 33 33 H 1.09005 * 115.54879 * 29.32806 * 16 15 14 34 34 H 1.09004 * 117.49787 * 359.97438 * 17 16 15 35 35 H 1.09002 * 117.50423 * 145.01738 * 17 16 15 36 36 H 1.09000 * 117.49408 * 252.50795 * 18 17 16 37 37 H 1.09004 * 117.51923 * 107.47935 * 18 17 16 38 38 H 1.09004 * 109.46019 * 58.27642 * 19 13 12 39 39 H 1.08999 * 109.46883 * 178.24462 * 19 13 12 40 40 H 1.09007 * 109.49669 * 299.23395 * 20 19 13 41 41 H 1.09001 * 109.53519 * 179.13897 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4851 -4.9853 0.1239 12 6 2.4793 -6.1471 0.0608 13 7 3.2089 -6.1001 -1.2126 14 6 4.0728 -7.2780 -1.3682 15 6 4.6206 -7.3237 -2.7960 16 6 5.5208 -8.5501 -2.9579 17 6 7.0006 -8.3054 -3.2595 18 6 6.0751 -8.8403 -4.3542 19 6 3.9842 -4.8590 -1.3350 20 6 3.0350 -3.6587 -1.3136 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8904 23 1 0.6246 -2.5571 0.8896 24 1 2.9319 -3.5552 0.8380 25 1 0.7702 -5.0734 -0.6941 26 1 0.9544 -5.0118 1.0756 27 1 1.9398 -7.0912 0.1358 28 1 3.1855 -6.0658 0.8872 29 1 4.9016 -7.2164 -0.6629 30 1 3.4948 -8.1810 -1.1717 31 1 3.7918 -7.3853 -3.5013 32 1 5.1985 -6.4208 -2.9927 33 1 5.2696 -9.4040 -2.3287 34 1 7.3328 -7.2706 -3.3431 35 1 7.7235 -8.9982 -2.8286 36 1 6.1891 -9.8851 -4.6433 37 1 5.7981 -8.1576 -5.1575 38 1 4.6834 -4.7840 -0.5021 39 1 4.5377 -4.8675 -2.2740 40 1 2.3444 -3.7260 -2.1543 41 1 3.6115 -2.7367 -1.3891 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259889310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:37 Heat of formation + Delta-G solvation = -18.782761 kcal Electronic energy + Delta-G solvation = -16935.639709 eV Core-core repulsion = 14428.174453 eV Total energy + Delta-G solvation = -2507.465256 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.19479 -38.39777 -36.20343 -34.37183 -31.89112 -31.30064 -29.01839 -25.93838 -24.22357 -23.49356 -23.15219 -22.01152 -21.14385 -20.43255 -18.42364 -16.93461 -16.57456 -16.45641 -16.11126 -15.29195 -15.03619 -14.83441 -14.77465 -14.56440 -13.96352 -13.71977 -13.26465 -13.01048 -12.82193 -12.64035 -12.56370 -12.34958 -12.20475 -12.08070 -12.00378 -11.92415 -11.62625 -11.26017 -11.12728 -10.81968 -10.69780 -10.67056 -10.51377 -9.19759 -8.17126 -6.26915 1.39506 1.40796 1.51585 2.41911 2.89671 3.02310 3.15901 3.79699 3.99215 4.06020 4.07332 4.10442 4.12750 4.30050 4.41189 4.46549 4.53902 4.65098 4.68056 4.75502 4.80381 4.82414 4.85434 4.95577 5.04773 5.08114 5.14833 5.18699 5.24215 5.30443 5.38523 5.40673 5.45761 5.48243 5.57978 5.81352 5.89640 6.20187 6.26673 6.32135 6.89219 7.41437 8.94900 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.037906 B = 0.004404 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.482610 B = 6356.836668 C = 6859.752322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.961 3.039 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.530 4.530 8 H 0.060 0.940 9 C 0.034 3.966 10 C -0.076 4.076 11 C -0.108 4.108 12 C 0.067 3.933 13 N -0.549 5.549 14 C 0.062 3.938 15 C -0.081 4.081 16 C -0.155 4.155 17 C -0.184 4.184 18 C -0.180 4.180 19 C 0.065 3.935 20 C -0.095 4.095 21 H 0.262 0.738 22 H -0.013 1.013 23 H -0.014 1.014 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.031 0.969 29 H 0.033 0.967 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.028 0.972 39 H 0.083 0.917 40 H 0.048 0.952 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.790 -17.452 -4.736 21.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.568 4.568 8 H 0.078 0.922 9 C -0.003 4.003 10 C -0.094 4.094 11 C -0.145 4.145 12 C -0.061 4.061 13 N -0.274 5.274 14 C -0.065 4.065 15 C -0.119 4.119 16 C -0.174 4.174 17 C -0.221 4.221 18 C -0.217 4.217 19 C -0.063 4.063 20 C -0.132 4.132 21 H 0.071 0.929 22 H 0.006 0.994 23 H 0.004 0.996 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.129 0.871 34 H 0.108 0.892 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.110 0.890 38 H 0.046 0.954 39 H 0.101 0.899 40 H 0.067 0.933 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.304 -17.351 -5.102 21.328 hybrid contribution 0.454 1.284 0.726 1.543 sum 11.758 -16.067 -4.376 20.385 Atomic orbital electron populations 1.70105 1.07812 1.27569 1.52164 1.25968 0.95711 1.03253 0.95052 0.85502 0.78706 0.78737 0.78453 1.19820 1.20882 1.18753 1.21653 0.93365 0.92158 1.49660 0.92210 1.19006 0.93998 0.93065 0.94242 1.21093 0.96931 0.94414 0.96983 1.21606 0.97873 0.93906 1.01159 1.22017 0.95812 0.98827 0.89455 1.61909 1.28833 1.02369 1.34296 1.22093 0.94846 0.92823 0.96748 1.21115 0.98261 0.96223 0.96286 1.22273 0.95217 0.99950 0.99915 1.23101 0.93029 1.02334 1.03651 1.23024 1.04130 1.02496 0.92059 1.22072 0.94356 0.89133 1.00733 1.21424 0.97867 0.96831 0.97126 0.92928 0.99427 0.99598 0.93523 0.92685 0.91979 0.89277 0.95052 0.94913 0.89845 0.91533 0.92366 0.87101 0.89247 0.88052 0.87820 0.89037 0.95377 0.89874 0.93332 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.20 13.29 21.45 0.28 -57.92 16 2 C 0.00 -0.16 5.46 84.66 0.46 0.31 16 3 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.53 -30.58 8.44 25.60 0.22 -30.37 16 8 H 0.06 3.31 7.08 -2.91 -0.02 3.29 16 9 C 0.03 1.84 4.45 29.85 0.13 1.97 16 10 C -0.08 -3.21 2.20 -10.72 -0.02 -3.23 16 11 C -0.11 -3.82 5.38 30.65 0.16 -3.66 16 12 C 0.07 1.88 5.46 86.33 0.47 2.35 16 13 N -0.55 -15.35 4.66 -896.37 -4.17 -19.52 16 14 C 0.06 1.34 4.92 86.30 0.42 1.77 16 15 C -0.08 -1.61 5.42 30.59 0.17 -1.44 16 16 C -0.15 -2.51 5.74 -10.80 -0.06 -2.57 16 17 C -0.18 -2.78 10.18 30.59 0.31 -2.47 16 18 C -0.18 -2.65 10.25 30.59 0.31 -2.33 16 19 C 0.06 1.97 5.29 86.33 0.46 2.42 16 20 C -0.09 -3.66 5.15 30.65 0.16 -3.51 16 21 H 0.26 15.31 8.31 -92.71 -0.77 14.53 16 22 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 23 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 24 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 25 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.09 2.12 8.02 -2.39 -0.02 2.10 16 28 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.03 0.70 8.12 -2.39 -0.02 0.68 16 30 H 0.08 1.59 7.99 -2.39 -0.02 1.57 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 1.23 6.16 -2.39 -0.01 1.21 16 33 H 0.11 1.61 8.08 -2.38 -0.02 1.59 16 34 H 0.09 1.42 8.03 -2.38 -0.02 1.40 16 35 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.08 2.27 6.21 -2.39 -0.01 2.25 16 40 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.06 2.31 7.05 -2.39 -0.02 2.29 16 Total: -1.00 -64.02 319.90 2.28 -61.74 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.95 Total: 9.41 kcal Atomic # 6 Polarization: -43.94 SS G_CDS: 3.19 Total: -40.75 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -3.89 Total: -77.44 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -64.02 2.28 -61.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.954 kcal (2) G-P(sol) polarization free energy of solvation -64.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds