Wall clock time and date at job start Sun Mar 29 2020 21:49:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86804 * 120.00066 * 2 1
4 4 H 1.48495 * 109.47046 * 269.99979 * 3 2 1
5 5 H 1.48496 * 109.47059 * 30.00109 * 3 2 1
6 6 H 1.48497 * 109.47235 * 150.00153 * 3 2 1
7 7 C 1.37879 * 120.00054 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99711 * 179.97438 * 7 2 1
9 9 C 1.50692 * 120.00007 * 359.97438 * 7 2 1
10 10 C 1.53000 * 109.47272 * 179.97438 * 9 7 2
11 11 C 1.53119 * 109.52412 * 175.00079 * 10 9 7
12 12 C 1.53040 * 109.27917 * 177.55898 * 11 10 9
13 13 N 1.46842 * 109.52651 * 300.82804 * 12 11 10
14 14 C 1.46899 * 111.00041 * 185.83838 * 13 12 11
15 15 C 1.52997 * 109.47254 * 169.99637 * 14 13 12
16 16 C 1.52992 * 109.47482 * 179.97438 * 15 14 13
17 17 C 1.52995 * 117.50322 * 243.62346 * 16 15 14
18 18 C 1.52999 * 60.00223 * 252.50829 * 17 16 15
19 19 C 1.46843 * 111.20263 * 61.73690 * 13 12 11
20 20 C 1.53043 * 109.52446 * 298.26417 * 19 13 12
21 21 H 0.96997 * 119.99851 * 359.97438 * 1 2 3
22 22 H 1.09008 * 109.46948 * 60.00450 * 9 7 2
23 23 H 1.09002 * 109.47617 * 300.00359 * 9 7 2
24 24 H 1.09007 * 109.52135 * 54.87870 * 10 9 7
25 25 H 1.09002 * 109.50021 * 57.62626 * 11 10 9
26 26 H 1.09003 * 109.53874 * 297.52271 * 11 10 9
27 27 H 1.08998 * 109.46221 * 180.80268 * 12 11 10
28 28 H 1.09002 * 109.44829 * 60.83620 * 12 11 10
29 29 H 1.09002 * 109.47043 * 289.99708 * 14 13 12
30 30 H 1.09001 * 109.47354 * 49.99769 * 14 13 12
31 31 H 1.09002 * 109.47153 * 300.00004 * 15 14 13
32 32 H 1.08998 * 109.47533 * 59.99633 * 15 14 13
33 33 H 1.09005 * 115.54879 * 29.32806 * 16 15 14
34 34 H 1.09004 * 117.49787 * 359.97438 * 17 16 15
35 35 H 1.09002 * 117.50423 * 145.01738 * 17 16 15
36 36 H 1.09000 * 117.49408 * 252.50795 * 18 17 16
37 37 H 1.09004 * 117.51923 * 107.47935 * 18 17 16
38 38 H 1.09004 * 109.46019 * 58.27642 * 19 13 12
39 39 H 1.08999 * 109.46883 * 178.24462 * 19 13 12
40 40 H 1.09007 * 109.49669 * 299.23395 * 20 19 13
41 41 H 1.09001 * 109.53519 * 179.13897 * 20 19 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0464 -1.4000
5 1 1.4466 2.6527 0.7000
6 1 3.5467 1.4402 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2510 -2.4991 -0.0005
10 6 2.2453 -3.6620 -0.0018
11 6 1.4851 -4.9853 0.1239
12 6 2.4793 -6.1471 0.0608
13 7 3.2089 -6.1001 -1.2126
14 6 4.0728 -7.2780 -1.3682
15 6 4.6206 -7.3237 -2.7960
16 6 5.5208 -8.5501 -2.9579
17 6 7.0006 -8.3054 -3.2595
18 6 6.0751 -8.8403 -4.3542
19 6 3.9842 -4.8590 -1.3350
20 6 3.0350 -3.6587 -1.3136
21 1 -0.4850 0.8400 0.0004
22 1 0.6241 -2.5567 -0.8904
23 1 0.6246 -2.5571 0.8896
24 1 2.9319 -3.5552 0.8380
25 1 0.7702 -5.0734 -0.6941
26 1 0.9544 -5.0118 1.0756
27 1 1.9398 -7.0912 0.1358
28 1 3.1855 -6.0658 0.8872
29 1 4.9016 -7.2164 -0.6629
30 1 3.4948 -8.1810 -1.1717
31 1 3.7918 -7.3853 -3.5013
32 1 5.1985 -6.4208 -2.9927
33 1 5.2696 -9.4040 -2.3287
34 1 7.3328 -7.2706 -3.3431
35 1 7.7235 -8.9982 -2.8286
36 1 6.1891 -9.8851 -4.6433
37 1 5.7981 -8.1576 -5.1575
38 1 4.6834 -4.7840 -0.5021
39 1 4.5377 -4.8675 -2.2740
40 1 2.3444 -3.7260 -2.1543
41 1 3.6115 -2.7367 -1.3891
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259889310.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:49:37
Heat of formation + Delta-G solvation = -18.782761 kcal
Electronic energy + Delta-G solvation = -16935.639709 eV
Core-core repulsion = 14428.174453 eV
Total energy + Delta-G solvation = -2507.465256 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 237.179 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.19479 -38.39777 -36.20343 -34.37183 -31.89112 -31.30064 -29.01839 -25.93838
-24.22357 -23.49356 -23.15219 -22.01152 -21.14385 -20.43255 -18.42364 -16.93461
-16.57456 -16.45641 -16.11126 -15.29195 -15.03619 -14.83441 -14.77465 -14.56440
-13.96352 -13.71977 -13.26465 -13.01048 -12.82193 -12.64035 -12.56370 -12.34958
-12.20475 -12.08070 -12.00378 -11.92415 -11.62625 -11.26017 -11.12728 -10.81968
-10.69780 -10.67056 -10.51377 -9.19759 -8.17126 -6.26915 1.39506 1.40796
1.51585 2.41911 2.89671 3.02310 3.15901 3.79699 3.99215 4.06020
4.07332 4.10442 4.12750 4.30050 4.41189 4.46549 4.53902 4.65098
4.68056 4.75502 4.80381 4.82414 4.85434 4.95577 5.04773 5.08114
5.14833 5.18699 5.24215 5.30443 5.38523 5.40673 5.45761 5.48243
5.57978 5.81352 5.89640 6.20187 6.26673 6.32135 6.89219 7.41437
8.94900
Molecular weight = 237.18amu
Principal moments of inertia in cm(-1)
A = 0.037906 B = 0.004404 C = 0.004081
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 738.482610 B = 6356.836668 C = 6859.752322
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.936 5.936
2 C -0.003 4.003
3 Si 0.961 3.039
4 H -0.273 1.273
5 H -0.283 1.283
6 H -0.263 1.263
7 C -0.530 4.530
8 H 0.060 0.940
9 C 0.034 3.966
10 C -0.076 4.076
11 C -0.108 4.108
12 C 0.067 3.933
13 N -0.549 5.549
14 C 0.062 3.938
15 C -0.081 4.081
16 C -0.155 4.155
17 C -0.184 4.184
18 C -0.180 4.180
19 C 0.065 3.935
20 C -0.095 4.095
21 H 0.262 0.738
22 H -0.013 1.013
23 H -0.014 1.014
24 H 0.046 0.954
25 H 0.054 0.946
26 H 0.062 0.938
27 H 0.089 0.911
28 H 0.031 0.969
29 H 0.033 0.967
30 H 0.083 0.917
31 H 0.066 0.934
32 H 0.058 0.942
33 H 0.111 0.889
34 H 0.089 0.911
35 H 0.101 0.899
36 H 0.103 0.897
37 H 0.091 0.909
38 H 0.028 0.972
39 H 0.083 0.917
40 H 0.048 0.952
41 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.790 -17.452 -4.736 21.587
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.576 5.576
2 C -0.200 4.200
3 Si 0.786 3.214
4 H -0.198 1.198
5 H -0.209 1.209
6 H -0.188 1.188
7 C -0.568 4.568
8 H 0.078 0.922
9 C -0.003 4.003
10 C -0.094 4.094
11 C -0.145 4.145
12 C -0.061 4.061
13 N -0.274 5.274
14 C -0.065 4.065
15 C -0.119 4.119
16 C -0.174 4.174
17 C -0.221 4.221
18 C -0.217 4.217
19 C -0.063 4.063
20 C -0.132 4.132
21 H 0.071 0.929
22 H 0.006 0.994
23 H 0.004 0.996
24 H 0.065 0.935
25 H 0.073 0.927
26 H 0.080 0.920
27 H 0.107 0.893
28 H 0.049 0.951
29 H 0.051 0.949
30 H 0.102 0.898
31 H 0.085 0.915
32 H 0.076 0.924
33 H 0.129 0.871
34 H 0.108 0.892
35 H 0.119 0.881
36 H 0.122 0.878
37 H 0.110 0.890
38 H 0.046 0.954
39 H 0.101 0.899
40 H 0.067 0.933
41 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 11.304 -17.351 -5.102 21.328
hybrid contribution 0.454 1.284 0.726 1.543
sum 11.758 -16.067 -4.376 20.385
Atomic orbital electron populations
1.70105 1.07812 1.27569 1.52164 1.25968 0.95711 1.03253 0.95052
0.85502 0.78706 0.78737 0.78453 1.19820 1.20882 1.18753 1.21653
0.93365 0.92158 1.49660 0.92210 1.19006 0.93998 0.93065 0.94242
1.21093 0.96931 0.94414 0.96983 1.21606 0.97873 0.93906 1.01159
1.22017 0.95812 0.98827 0.89455 1.61909 1.28833 1.02369 1.34296
1.22093 0.94846 0.92823 0.96748 1.21115 0.98261 0.96223 0.96286
1.22273 0.95217 0.99950 0.99915 1.23101 0.93029 1.02334 1.03651
1.23024 1.04130 1.02496 0.92059 1.22072 0.94356 0.89133 1.00733
1.21424 0.97867 0.96831 0.97126 0.92928 0.99427 0.99598 0.93523
0.92685 0.91979 0.89277 0.95052 0.94913 0.89845 0.91533 0.92366
0.87101 0.89247 0.88052 0.87820 0.89037 0.95377 0.89874 0.93332
0.92586
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -58.20 13.29 21.45 0.28 -57.92 16
2 C 0.00 -0.16 5.46 84.66 0.46 0.31 16
3 Si 0.96 45.01 29.54 68.60 2.03 47.04 16
4 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16
5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16
6 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16
7 C -0.53 -30.58 8.44 25.60 0.22 -30.37 16
8 H 0.06 3.31 7.08 -2.91 -0.02 3.29 16
9 C 0.03 1.84 4.45 29.85 0.13 1.97 16
10 C -0.08 -3.21 2.20 -10.72 -0.02 -3.23 16
11 C -0.11 -3.82 5.38 30.65 0.16 -3.66 16
12 C 0.07 1.88 5.46 86.33 0.47 2.35 16
13 N -0.55 -15.35 4.66 -896.37 -4.17 -19.52 16
14 C 0.06 1.34 4.92 86.30 0.42 1.77 16
15 C -0.08 -1.61 5.42 30.59 0.17 -1.44 16
16 C -0.15 -2.51 5.74 -10.80 -0.06 -2.57 16
17 C -0.18 -2.78 10.18 30.59 0.31 -2.47 16
18 C -0.18 -2.65 10.25 30.59 0.31 -2.33 16
19 C 0.06 1.97 5.29 86.33 0.46 2.42 16
20 C -0.09 -3.66 5.15 30.65 0.16 -3.51 16
21 H 0.26 15.31 8.31 -92.71 -0.77 14.53 16
22 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16
23 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16
24 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16
25 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16
26 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16
27 H 0.09 2.12 8.02 -2.39 -0.02 2.10 16
28 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16
29 H 0.03 0.70 8.12 -2.39 -0.02 0.68 16
30 H 0.08 1.59 7.99 -2.39 -0.02 1.57 16
31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16
32 H 0.06 1.23 6.16 -2.39 -0.01 1.21 16
33 H 0.11 1.61 8.08 -2.38 -0.02 1.59 16
34 H 0.09 1.42 8.03 -2.38 -0.02 1.40 16
35 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16
36 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16
37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16
38 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16
39 H 0.08 2.27 6.21 -2.39 -0.01 2.25 16
40 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16
41 H 0.06 2.31 7.05 -2.39 -0.02 2.29 16
Total: -1.00 -64.02 319.90 2.28 -61.74
By element:
Atomic # 1 Polarization: 8.46 SS G_CDS: 0.95 Total: 9.41 kcal
Atomic # 6 Polarization: -43.94 SS G_CDS: 3.19 Total: -40.75 kcal
Atomic # 7 Polarization: -73.55 SS G_CDS: -3.89 Total: -77.44 kcal
Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal
Total: -64.02 2.28 -61.74 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259889310.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.954 kcal
(2) G-P(sol) polarization free energy of solvation -64.020 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.066 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.737 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.783 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds