Wall clock time and date at job start Sun Mar 29 2020 21:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99604 * 2 1 4 4 H 1.48503 * 109.47102 * 239.99463 * 3 2 1 5 5 H 1.48489 * 109.47636 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47037 * 120.00137 * 3 2 1 7 7 C 1.37877 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00160 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99833 * 0.02562 * 7 2 1 10 10 C 1.53117 * 109.52162 * 180.02562 * 9 7 2 11 11 C 1.53044 * 109.27792 * 177.62499 * 10 9 7 12 12 N 1.46847 * 109.51335 * 300.82256 * 11 10 9 13 13 C 1.46901 * 111.00144 * 185.83239 * 12 11 10 14 14 C 1.53000 * 109.47158 * 170.00079 * 13 12 11 15 15 C 1.54269 * 110.03110 * 292.91028 * 14 13 12 16 16 C 1.54971 * 104.15655 * 217.13305 * 15 14 13 17 17 C 1.54889 * 102.77632 * 37.89528 * 16 15 14 18 18 C 1.53869 * 110.03122 * 175.69096 * 14 13 12 19 19 C 1.46830 * 111.21086 * 61.74856 * 12 11 10 20 20 C 1.53038 * 109.51757 * 298.25173 * 19 12 11 21 21 H 0.96999 * 120.00049 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.52694 * 59.87118 * 9 7 2 23 23 H 1.09001 * 109.50874 * 57.68679 * 10 9 7 24 24 H 1.09002 * 109.53469 * 297.57800 * 10 9 7 25 25 H 1.09002 * 109.46396 * 60.83566 * 11 10 9 26 26 H 1.08994 * 109.46485 * 180.81491 * 11 10 9 27 27 H 1.09001 * 109.46985 * 290.00439 * 13 12 11 28 28 H 1.09002 * 109.46593 * 50.00429 * 13 12 11 29 29 H 1.09003 * 110.01867 * 54.30170 * 14 13 12 30 30 H 1.08994 * 110.48922 * 335.78368 * 15 14 13 31 31 H 1.09004 * 110.48457 * 98.42994 * 15 14 13 32 32 H 1.08990 * 110.72290 * 279.57442 * 16 15 14 33 33 H 1.09008 * 110.75847 * 156.22071 * 16 15 14 34 34 H 1.08999 * 110.48441 * 203.40908 * 17 16 15 35 35 H 1.08995 * 110.60666 * 80.80973 * 17 16 15 36 36 H 1.08996 * 110.03568 * 238.57153 * 18 14 13 37 37 H 1.09001 * 110.03755 * 359.95579 * 18 14 13 38 38 H 1.08995 * 109.46742 * 178.23410 * 19 12 11 39 39 H 1.09004 * 109.45381 * 58.25744 * 19 12 11 40 40 H 1.08997 * 109.50308 * 299.23764 * 20 19 12 41 41 H 1.09000 * 109.50697 * 179.11489 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2452 -3.6638 0.0018 11 6 1.4752 -4.9851 0.0617 12 7 0.6525 -5.0187 1.2776 13 6 0.0058 -6.3278 1.4396 14 6 -0.6339 -6.4123 2.8268 15 6 0.4606 -6.4192 3.9140 16 6 -0.0798 -7.3951 4.9897 17 6 -0.7547 -8.5010 4.1409 18 6 -1.4067 -7.7351 2.9711 19 6 -0.3413 -3.9379 1.2766 20 6 0.3743 -2.5853 1.2529 21 1 -0.4850 0.8400 -0.0004 22 1 0.6227 -2.5570 -0.8882 23 1 2.8985 -3.5837 0.8706 24 1 2.8442 -3.6327 -0.9083 25 1 0.8324 -5.0709 -0.8144 26 1 2.1805 -5.8160 0.0774 27 1 -0.7631 -6.4500 0.6768 28 1 0.7508 -7.1165 1.3343 29 1 -1.3066 -5.5684 2.9796 30 1 1.4021 -6.7858 3.5051 31 1 0.5884 -5.4211 4.3330 32 1 -0.8101 -6.8987 5.6287 33 1 0.7368 -7.8074 5.5825 34 1 -1.5131 -9.0214 4.7259 35 1 -0.0115 -9.2058 3.7683 36 1 -2.4542 -7.5331 3.1947 37 1 -1.3266 -8.3165 2.0526 38 1 -0.9554 -4.0082 2.1744 39 1 -0.9755 -4.0286 0.3947 40 1 0.9983 -2.4882 2.1413 41 1 -0.3636 -1.7833 1.2364 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260318928.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:45 Heat of formation + Delta-G solvation = -43.647573 kcal Electronic energy + Delta-G solvation = -17564.157497 eV Core-core repulsion = 15055.614022 eV Total energy + Delta-G solvation = -2508.543475 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.24819 -38.55802 -35.62986 -33.36888 -31.47883 -30.42655 -29.43353 -27.57658 -25.01892 -23.78339 -22.87284 -21.42756 -20.33045 -20.19739 -18.44693 -17.21132 -16.55386 -16.15955 -15.87275 -15.49442 -15.10776 -14.81232 -14.33813 -14.13726 -14.06596 -13.95315 -13.12845 -12.86838 -12.82298 -12.58205 -12.42304 -12.00155 -11.90420 -11.85695 -11.81130 -11.76865 -11.52139 -11.43976 -11.38496 -11.11667 -10.78900 -10.58948 -10.36004 -9.12674 -8.07506 -6.21245 1.41401 1.42932 1.50528 2.44123 3.05606 3.19257 3.80940 3.84065 3.89341 4.21770 4.27496 4.33668 4.42807 4.55385 4.62165 4.65053 4.69423 4.76829 4.79112 4.84789 4.93486 4.95081 5.00426 5.02612 5.10114 5.15476 5.20465 5.24641 5.31312 5.37142 5.49363 5.54773 5.57511 5.61460 5.63949 6.00848 6.04456 6.32707 6.39186 6.41402 6.90311 7.46514 8.96956 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.044833 B = 0.005151 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.387165 B = 5434.806765 C = 5580.258748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.012 3.988 3 Si 0.954 3.046 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.051 0.949 9 C 0.044 3.956 10 C -0.099 4.099 11 C 0.066 3.934 12 N -0.537 5.537 13 C 0.064 3.936 14 C -0.090 4.090 15 C -0.104 4.104 16 C -0.125 4.125 17 C -0.118 4.118 18 C -0.117 4.117 19 C 0.070 3.930 20 C -0.094 4.094 21 H 0.260 0.740 22 H -0.014 1.014 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.018 0.982 26 H 0.087 0.913 27 H 0.024 0.976 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.009 0.991 40 H 0.029 0.971 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.578 -15.824 6.672 17.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.069 0.931 9 C 0.025 3.975 10 C -0.137 4.137 11 C -0.062 4.062 12 N -0.262 5.262 13 C -0.063 4.063 14 C -0.109 4.109 15 C -0.142 4.142 16 C -0.163 4.163 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.058 4.058 20 C -0.132 4.132 21 H 0.069 0.931 22 H 0.004 0.996 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.036 0.964 26 H 0.105 0.895 27 H 0.043 0.957 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.027 0.973 40 H 0.048 0.952 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.417 -15.630 7.055 17.207 hybrid contribution -0.290 1.306 -0.969 1.652 sum -1.706 -14.323 6.086 15.656 Atomic orbital electron populations 1.70017 1.07199 1.27108 1.51518 1.25751 0.95676 1.02380 0.94813 0.85682 0.78439 0.79140 0.78813 1.19675 1.20910 1.19675 1.21569 0.92995 0.92287 1.50427 0.93087 1.18659 0.93172 0.92707 0.92940 1.21535 0.97942 0.94067 1.00117 1.22046 0.96005 0.98271 0.89880 1.61935 1.23337 1.03204 1.37729 1.22303 0.97143 0.90565 0.96331 1.21799 0.96889 0.98037 0.94161 1.22223 0.97817 0.98820 0.95299 1.22549 1.00016 0.96446 0.97269 1.22327 0.99792 0.97301 0.96135 1.22168 0.99101 0.94927 0.99319 1.22030 0.93104 0.91906 0.98754 1.21406 0.99088 0.94682 0.98037 0.93099 0.99625 0.93039 0.92920 0.96409 0.89462 0.95748 0.89861 0.92500 0.91874 0.93519 0.91813 0.90990 0.90786 0.91180 0.91661 0.91288 0.91032 0.97307 0.95192 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.40 11.37 21.45 0.24 -54.15 16 2 C 0.01 0.69 5.31 84.65 0.45 1.14 16 3 Si 0.95 44.57 29.54 68.60 2.03 46.60 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.53 -30.50 8.56 25.60 0.22 -30.29 16 8 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 9 C 0.04 2.29 2.16 -11.46 -0.02 2.26 16 10 C -0.10 -4.24 5.32 30.65 0.16 -4.08 16 11 C 0.07 2.35 5.46 86.33 0.47 2.82 16 12 N -0.54 -18.87 4.46 -896.39 -4.00 -22.87 16 13 C 0.06 1.77 4.01 86.30 0.35 2.11 16 14 C -0.09 -2.23 2.86 -10.07 -0.03 -2.26 16 15 C -0.10 -2.53 6.18 31.70 0.20 -2.34 16 16 C -0.13 -2.37 6.91 31.91 0.22 -2.15 16 17 C -0.12 -1.96 6.83 31.67 0.22 -1.74 16 18 C -0.12 -2.25 6.46 31.32 0.20 -2.05 16 19 C 0.07 2.83 5.30 86.33 0.46 3.28 16 20 C -0.09 -4.66 5.12 30.65 0.16 -4.50 16 21 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 22 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 23 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.05 2.17 8.14 -2.39 -0.02 2.16 16 25 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.09 2.60 8.01 -2.39 -0.02 2.58 16 27 H 0.02 0.68 8.12 -2.39 -0.02 0.66 16 28 H 0.08 2.04 7.87 -2.39 -0.02 2.03 16 29 H 0.06 1.59 6.23 -2.39 -0.01 1.58 16 30 H 0.06 1.57 7.77 -2.39 -0.02 1.55 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.07 1.24 7.67 -2.39 -0.02 1.22 16 38 H 0.07 2.68 6.12 -2.39 -0.01 2.66 16 39 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 40 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.06 3.31 6.17 -2.39 -0.01 3.30 16 Total: -1.00 -60.79 308.90 2.27 -58.52 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.96 Total: 9.68 kcal Atomic # 6 Polarization: -40.83 SS G_CDS: 3.04 Total: -37.78 kcal Atomic # 7 Polarization: -73.27 SS G_CDS: -3.75 Total: -77.02 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -60.79 2.27 -58.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260318928.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.872 kcal (2) G-P(sol) polarization free energy of solvation -60.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds