Wall clock time and date at job start Sun Mar 29 2020 21:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99514 * 2 1 4 4 H 1.48492 * 109.47115 * 269.99888 * 3 2 1 5 5 H 1.48502 * 109.47058 * 29.99876 * 3 2 1 6 6 H 1.48496 * 109.46691 * 150.00107 * 3 2 1 7 7 C 1.37872 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99940 * 179.83884 * 7 2 1 9 9 C 1.50699 * 120.00162 * 359.84224 * 7 2 1 10 10 N 1.46904 * 110.01758 * 304.00838 * 9 7 2 11 11 C 1.46893 * 110.99744 * 300.98306 * 10 9 7 12 12 C 1.53004 * 109.46961 * 238.78166 * 11 10 9 13 13 C 1.52998 * 109.47178 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47294 * 59.99642 * 13 12 11 15 15 C 1.53004 * 109.47031 * 299.99799 * 14 13 12 16 16 C 1.53001 * 109.47211 * 118.77992 * 11 10 9 17 17 C 1.54270 * 110.03374 * 65.39843 * 9 7 2 18 18 C 1.54962 * 104.16165 * 95.75292 * 17 9 7 19 19 C 1.54889 * 102.77808 * 37.89065 * 18 17 9 20 20 C 1.53871 * 110.03438 * 182.61397 * 9 7 2 21 21 H 0.96995 * 120.00449 * 5.01437 * 1 2 3 22 22 H 1.00895 * 110.99794 * 177.02614 * 10 9 7 23 23 H 1.08998 * 109.47178 * 358.77837 * 11 10 9 24 24 H 1.09000 * 109.47278 * 59.99674 * 12 11 10 25 25 H 1.08998 * 109.46905 * 299.99838 * 12 11 10 26 26 H 1.08995 * 109.47489 * 179.97438 * 13 12 11 27 27 H 1.09005 * 109.47221 * 299.99755 * 13 12 11 28 28 H 1.08998 * 109.47176 * 60.00160 * 14 13 12 29 29 H 1.09006 * 109.47202 * 180.02562 * 14 13 12 30 30 H 1.08997 * 109.46986 * 179.97438 * 15 14 13 31 31 H 1.08998 * 109.47435 * 300.00202 * 15 14 13 32 32 H 1.08998 * 109.47176 * 59.99843 * 16 11 10 33 33 H 1.08996 * 109.47099 * 299.99611 * 16 11 10 34 34 H 1.08994 * 110.48719 * 214.40263 * 17 9 7 35 35 H 1.09007 * 110.48422 * 337.04753 * 17 9 7 36 36 H 1.09005 * 110.72328 * 279.57726 * 18 17 9 37 37 H 1.08995 * 110.92659 * 156.29424 * 18 17 9 38 38 H 1.09001 * 110.48991 * 203.40543 * 19 18 17 39 39 H 1.08996 * 110.48817 * 80.76051 * 19 18 17 40 40 H 1.09005 * 110.03262 * 359.95105 * 20 9 7 41 41 H 1.09003 * 110.03442 * 121.38074 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 -0.0021 9 6 1.2512 -2.4991 0.0047 10 7 0.3339 -2.5466 1.1512 11 6 1.0659 -2.4072 2.4171 12 6 0.8116 -3.6369 3.2913 13 6 1.5735 -3.4915 4.6101 14 6 1.0919 -2.2371 5.3418 15 6 1.3463 -1.0075 4.4676 16 6 0.5848 -1.1527 3.1490 17 6 0.4613 -2.6576 -1.3109 18 6 1.3908 -3.5104 -2.2109 19 6 2.0143 -4.5122 -1.2075 20 6 2.2385 -3.6775 0.0704 21 1 -0.4850 0.8367 -0.0734 22 1 -0.2135 -3.3940 1.1414 23 1 2.1330 -2.3216 2.2122 24 1 1.1543 -4.5306 2.7698 25 1 -0.2555 -3.7226 3.4962 26 1 1.3920 -4.3673 5.2330 27 1 2.6408 -3.4056 4.4056 28 1 0.0247 -2.3230 5.5463 29 1 1.6350 -2.1333 6.2811 30 1 1.0028 -0.1139 4.9887 31 1 2.4135 -0.9216 4.2630 32 1 -0.4823 -1.2384 3.3539 33 1 0.7660 -0.2768 2.5263 34 1 -0.4787 -3.1791 -1.1310 35 1 0.2776 -1.6838 -1.7652 36 1 2.1622 -2.8895 -2.6666 37 1 0.8181 -4.0354 -2.9753 38 1 2.9632 -4.8915 -1.5868 39 1 1.3254 -5.3336 -1.0106 40 1 3.2627 -3.3054 0.0984 41 1 2.0371 -4.2846 0.9531 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260555750.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:57 Heat of formation + Delta-G solvation = -25.459894 kcal Electronic energy + Delta-G solvation = -18570.641306 eV Core-core repulsion = 16062.886508 eV Total energy + Delta-G solvation = -2507.754798 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.54106 -36.82160 -32.86824 -31.88961 -30.01746 -28.40090 -27.47387 -25.82086 -23.67207 -21.85030 -21.00008 -19.80005 -18.76082 -18.47314 -15.96102 -15.08004 -14.63198 -14.49287 -14.02374 -13.77822 -13.49191 -13.12905 -12.45649 -12.35035 -12.01809 -11.81296 -11.54003 -11.33892 -10.88900 -10.66474 -10.59841 -10.48628 -10.36986 -10.26782 -10.12876 -9.86533 -9.82393 -9.74902 -9.45438 -9.18065 -9.10123 -8.73318 -8.16225 -6.61171 -5.73080 -3.88430 3.35810 3.43952 3.46993 4.54152 5.18272 5.30345 5.35513 5.45844 5.65544 5.78287 5.83644 5.86262 5.92736 6.04244 6.10209 6.14668 6.22403 6.32346 6.42141 6.45692 6.49884 6.53536 6.67589 6.72782 6.76147 6.81486 6.83717 6.90474 6.98414 7.05992 7.12449 7.35093 7.37062 7.48932 7.60740 7.90218 7.99215 8.40658 8.81205 9.02496 9.33824 9.77745 11.26193 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.017838 B = 0.012596 C = 0.008387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.329848 B = 2222.449152 C = 3337.896564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.089 3.911 3 Si 0.863 3.137 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.048 0.952 9 C 0.247 3.753 10 N -0.642 5.642 11 C 0.113 3.887 12 C -0.138 4.138 13 C -0.113 4.113 14 C -0.115 4.115 15 C -0.123 4.123 16 C -0.094 4.094 17 C -0.089 4.089 18 C -0.123 4.123 19 C -0.120 4.120 20 C -0.151 4.151 21 H 0.251 0.749 22 H 0.298 0.702 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.033 0.967 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.042 0.958 38 H 0.044 0.956 39 H 0.047 0.953 40 H 0.052 0.948 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.310 -5.869 4.816 7.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.117 4.117 3 Si 0.691 3.309 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.555 4.555 8 H 0.066 0.934 9 C 0.158 3.842 10 N -0.269 5.269 11 C 0.003 3.997 12 C -0.177 4.177 13 C -0.151 4.151 14 C -0.152 4.152 15 C -0.161 4.161 16 C -0.133 4.133 17 C -0.127 4.127 18 C -0.161 4.161 19 C -0.158 4.158 20 C -0.190 4.190 21 H 0.061 0.939 22 H 0.114 0.886 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.051 0.949 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.952 -5.061 4.840 7.067 hybrid contribution 0.982 0.069 0.099 0.990 sum 1.934 -4.992 4.939 7.284 Atomic orbital electron populations 1.70139 1.05129 1.25139 1.46583 1.24830 0.94474 0.97660 0.94696 0.87082 0.80389 0.85452 0.77931 1.21033 1.21375 1.20168 1.20884 0.91614 0.89766 1.53190 0.93402 1.19156 0.86860 0.91147 0.87048 1.60753 1.25931 1.39498 1.00722 1.21114 0.97956 0.91640 0.89035 1.22212 0.99804 0.99374 0.96273 1.21457 0.99995 0.97034 0.96588 1.21509 1.00517 0.95575 0.97637 1.21615 1.00745 0.96392 0.97328 1.21448 0.97914 1.00414 0.93481 1.22215 0.95201 0.98822 0.96487 1.22484 0.99277 0.97326 0.97002 1.22277 0.98727 0.97493 0.97307 1.23155 1.02041 0.98571 0.95280 0.93881 0.88588 0.92095 0.93189 0.92515 0.93245 0.92451 0.92550 0.93268 0.93220 0.92654 0.93590 0.90208 0.94866 0.90552 0.92178 0.93939 0.93765 0.93398 0.92905 0.94166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.55 11.28 55.43 0.63 -21.93 16 2 C 0.09 2.35 3.78 -17.82 -0.07 2.28 16 3 Si 0.86 20.76 29.54 -169.99 -5.02 15.73 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -13.35 6.71 -34.44 -0.23 -13.58 16 8 H 0.05 1.28 7.33 -52.49 -0.38 0.90 16 9 C 0.25 5.69 0.38 -131.63 -0.05 5.64 16 10 N -0.64 -14.32 5.09 -93.08 -0.47 -14.79 16 11 C 0.11 2.30 1.36 -67.71 -0.09 2.21 16 12 C -0.14 -2.33 4.93 -26.73 -0.13 -2.47 16 13 C -0.11 -1.68 5.92 -26.73 -0.16 -1.84 16 14 C -0.11 -1.70 5.92 -26.73 -0.16 -1.86 16 15 C -0.12 -2.11 5.92 -26.75 -0.16 -2.27 16 16 C -0.09 -1.94 5.53 -26.75 -0.15 -2.09 16 17 C -0.09 -2.01 5.65 -25.03 -0.14 -2.15 16 18 C -0.12 -2.40 6.91 -24.70 -0.17 -2.57 16 19 C -0.12 -2.20 6.83 -25.07 -0.17 -2.37 16 20 C -0.15 -3.10 5.29 -25.61 -0.14 -3.23 16 21 H 0.25 6.67 8.32 -40.82 -0.34 6.33 16 22 H 0.30 6.29 7.95 -39.29 -0.31 5.98 16 23 H 0.06 1.38 6.33 -51.93 -0.33 1.05 16 24 H 0.05 0.83 6.91 -51.93 -0.36 0.47 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.93 6.61 -51.93 -0.34 1.59 16 34 H 0.03 0.74 7.91 -51.93 -0.41 0.33 16 35 H 0.08 1.96 6.76 -51.93 -0.35 1.60 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.05 1.13 7.37 -51.93 -0.38 0.75 16 41 H 0.04 0.78 6.02 -51.93 -0.31 0.47 16 LS Contribution 301.59 15.07 4.54 4.54 Total: -1.00 -25.95 301.59 -9.53 -35.49 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -7.39 Total: 5.24 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: -1.81 Total: -24.29 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.15 Total: -36.71 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -25.95 -9.53 -35.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260555750.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.026 kcal (2) G-P(sol) polarization free energy of solvation -25.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds