Wall clock time and date at job start Sun Mar 29 2020 21:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99514 * 2 1 4 4 H 1.48492 * 109.47115 * 269.99888 * 3 2 1 5 5 H 1.48502 * 109.47058 * 29.99876 * 3 2 1 6 6 H 1.48496 * 109.46691 * 150.00107 * 3 2 1 7 7 C 1.37872 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99940 * 179.83884 * 7 2 1 9 9 C 1.50699 * 120.00162 * 359.84224 * 7 2 1 10 10 N 1.46904 * 110.01758 * 304.00838 * 9 7 2 11 11 C 1.46893 * 110.99744 * 300.98306 * 10 9 7 12 12 C 1.53004 * 109.46961 * 238.78166 * 11 10 9 13 13 C 1.52998 * 109.47178 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47294 * 59.99642 * 13 12 11 15 15 C 1.53004 * 109.47031 * 299.99799 * 14 13 12 16 16 C 1.53001 * 109.47211 * 118.77992 * 11 10 9 17 17 C 1.54270 * 110.03374 * 65.39843 * 9 7 2 18 18 C 1.54962 * 104.16165 * 95.75292 * 17 9 7 19 19 C 1.54889 * 102.77808 * 37.89065 * 18 17 9 20 20 C 1.53871 * 110.03438 * 182.61397 * 9 7 2 21 21 H 0.96995 * 120.00449 * 5.01437 * 1 2 3 22 22 H 1.00895 * 110.99794 * 177.02614 * 10 9 7 23 23 H 1.08998 * 109.47178 * 358.77837 * 11 10 9 24 24 H 1.09000 * 109.47278 * 59.99674 * 12 11 10 25 25 H 1.08998 * 109.46905 * 299.99838 * 12 11 10 26 26 H 1.08995 * 109.47489 * 179.97438 * 13 12 11 27 27 H 1.09005 * 109.47221 * 299.99755 * 13 12 11 28 28 H 1.08998 * 109.47176 * 60.00160 * 14 13 12 29 29 H 1.09006 * 109.47202 * 180.02562 * 14 13 12 30 30 H 1.08997 * 109.46986 * 179.97438 * 15 14 13 31 31 H 1.08998 * 109.47435 * 300.00202 * 15 14 13 32 32 H 1.08998 * 109.47176 * 59.99843 * 16 11 10 33 33 H 1.08996 * 109.47099 * 299.99611 * 16 11 10 34 34 H 1.08994 * 110.48719 * 214.40263 * 17 9 7 35 35 H 1.09007 * 110.48422 * 337.04753 * 17 9 7 36 36 H 1.09005 * 110.72328 * 279.57726 * 18 17 9 37 37 H 1.08995 * 110.92659 * 156.29424 * 18 17 9 38 38 H 1.09001 * 110.48991 * 203.40543 * 19 18 17 39 39 H 1.08996 * 110.48817 * 80.76051 * 19 18 17 40 40 H 1.09005 * 110.03262 * 359.95105 * 20 9 7 41 41 H 1.09003 * 110.03442 * 121.38074 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 -0.0021 9 6 1.2512 -2.4991 0.0047 10 7 0.3339 -2.5466 1.1512 11 6 1.0659 -2.4072 2.4171 12 6 0.8116 -3.6369 3.2913 13 6 1.5735 -3.4915 4.6101 14 6 1.0919 -2.2371 5.3418 15 6 1.3463 -1.0075 4.4676 16 6 0.5848 -1.1527 3.1490 17 6 0.4613 -2.6576 -1.3109 18 6 1.3908 -3.5104 -2.2109 19 6 2.0143 -4.5122 -1.2075 20 6 2.2385 -3.6775 0.0704 21 1 -0.4850 0.8367 -0.0734 22 1 -0.2135 -3.3940 1.1414 23 1 2.1330 -2.3216 2.2122 24 1 1.1543 -4.5306 2.7698 25 1 -0.2555 -3.7226 3.4962 26 1 1.3920 -4.3673 5.2330 27 1 2.6408 -3.4056 4.4056 28 1 0.0247 -2.3230 5.5463 29 1 1.6350 -2.1333 6.2811 30 1 1.0028 -0.1139 4.9887 31 1 2.4135 -0.9216 4.2630 32 1 -0.4823 -1.2384 3.3539 33 1 0.7660 -0.2768 2.5263 34 1 -0.4787 -3.1791 -1.1310 35 1 0.2776 -1.6838 -1.7652 36 1 2.1622 -2.8895 -2.6666 37 1 0.8181 -4.0354 -2.9753 38 1 2.9632 -4.8915 -1.5868 39 1 1.3254 -5.3336 -1.0106 40 1 3.2627 -3.3054 0.0984 41 1 2.0371 -4.2846 0.9531 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260555750.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:57 Heat of formation + Delta-G solvation = -38.777371 kcal Electronic energy + Delta-G solvation = -18571.218795 eV Core-core repulsion = 16062.886508 eV Total energy + Delta-G solvation = -2508.332287 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.15468 -38.34754 -34.56584 -33.74164 -31.43008 -29.99396 -29.15570 -27.64389 -25.46718 -23.26287 -22.45817 -21.37691 -20.32788 -20.20901 -17.89239 -16.71558 -16.47089 -16.06208 -15.71451 -15.16711 -14.90289 -14.70827 -14.06694 -14.03711 -13.70365 -13.40336 -13.04082 -12.95200 -12.74824 -12.45751 -12.28753 -12.10289 -11.86607 -11.83394 -11.63316 -11.51860 -11.48850 -11.27413 -11.12808 -10.76722 -10.73946 -10.65516 -10.14159 -8.34725 -7.76852 -5.96351 1.38054 1.43402 1.47789 2.52224 3.37614 3.80510 4.00683 4.05889 4.18502 4.22586 4.24037 4.44702 4.49535 4.63695 4.73170 4.79304 4.82828 4.90955 4.92818 5.00235 5.05574 5.09816 5.16492 5.22702 5.24412 5.27919 5.38332 5.40025 5.41125 5.47482 5.57111 5.58714 5.71531 5.80002 5.84163 5.90156 6.09260 6.47623 6.89848 7.20420 7.54851 7.72203 9.19180 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.017838 B = 0.012596 C = 0.008387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.329848 B = 2222.449152 C = 3337.896564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.060 3.940 3 Si 0.905 3.095 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.030 0.970 9 C 0.241 3.759 10 N -0.658 5.658 11 C 0.118 3.882 12 C -0.129 4.129 13 C -0.110 4.110 14 C -0.109 4.109 15 C -0.120 4.120 16 C -0.090 4.090 17 C -0.088 4.088 18 C -0.117 4.117 19 C -0.111 4.111 20 C -0.145 4.145 21 H 0.246 0.754 22 H 0.304 0.696 23 H 0.034 0.966 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.033 0.967 35 H 0.039 0.961 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.036 0.964 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.590 -7.682 5.862 9.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.561 4.561 8 H 0.048 0.952 9 C 0.151 3.849 10 N -0.286 5.286 11 C 0.007 3.993 12 C -0.168 4.168 13 C -0.148 4.148 14 C -0.146 4.146 15 C -0.158 4.158 16 C -0.128 4.128 17 C -0.127 4.127 18 C -0.155 4.155 19 C -0.149 4.149 20 C -0.185 4.185 21 H 0.056 0.944 22 H 0.121 0.879 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.054 0.946 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.245 -6.875 5.885 9.135 hybrid contribution 0.894 0.674 -0.237 1.145 sum 2.139 -6.201 5.648 8.656 Atomic orbital electron populations 1.70229 1.05841 1.25069 1.47657 1.25202 0.94954 0.99501 0.94785 0.86426 0.79374 0.83222 0.77690 1.20868 1.21583 1.20370 1.21070 0.90944 0.91502 1.52620 0.95154 1.19132 0.87395 0.90849 0.87480 1.60610 1.26524 1.40051 1.01376 1.21033 0.95886 0.93339 0.89006 1.22083 1.00463 0.97432 0.96781 1.21461 0.99365 0.98267 0.95719 1.21478 1.01332 0.93882 0.97956 1.21572 0.99625 0.98510 0.96065 1.21345 0.97892 0.98855 0.94749 1.22109 0.96038 0.97580 0.96936 1.22427 0.98574 0.97180 0.97352 1.22237 1.00157 0.97173 0.95318 1.23012 1.00178 0.98088 0.97230 0.94443 0.87873 0.94814 0.92580 0.92094 0.90402 0.92799 0.91959 0.90705 0.92370 0.93401 0.94426 0.94488 0.94783 0.94224 0.93265 0.91378 0.91748 0.91381 0.94561 0.93140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.47 11.28 21.45 0.24 -47.23 16 2 C 0.06 3.23 3.78 84.65 0.32 3.55 16 3 Si 0.90 43.75 29.54 68.60 2.03 45.78 16 4 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 6 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 7 C -0.52 -27.78 6.71 25.60 0.17 -27.61 16 8 H 0.03 1.68 7.33 -2.91 -0.02 1.66 16 9 C 0.24 11.17 0.38 3.50 0.00 11.17 16 10 N -0.66 -29.49 5.09 -448.40 -2.28 -31.77 16 11 C 0.12 4.78 1.36 44.92 0.06 4.84 16 12 C -0.13 -4.10 4.93 30.59 0.15 -3.95 16 13 C -0.11 -2.94 5.92 30.59 0.18 -2.76 16 14 C -0.11 -2.91 5.92 30.60 0.18 -2.72 16 15 C -0.12 -4.00 5.92 30.58 0.18 -3.82 16 16 C -0.09 -3.75 5.53 30.58 0.17 -3.58 16 17 C -0.09 -4.00 5.65 31.70 0.18 -3.82 16 18 C -0.12 -4.40 6.91 31.91 0.22 -4.18 16 19 C -0.11 -3.77 6.83 31.67 0.22 -3.56 16 20 C -0.15 -5.82 5.29 31.32 0.17 -5.66 16 21 H 0.25 13.51 8.32 -92.71 -0.77 12.74 16 22 H 0.30 12.68 7.95 -89.70 -0.71 11.97 16 23 H 0.03 1.55 6.33 -2.39 -0.02 1.53 16 24 H 0.06 1.71 6.91 -2.39 -0.02 1.70 16 25 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 33 H 0.04 1.84 6.61 -2.39 -0.02 1.82 16 34 H 0.03 1.50 7.91 -2.39 -0.02 1.48 16 35 H 0.04 2.07 6.76 -2.38 -0.02 2.05 16 36 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 37 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.04 1.54 7.37 -2.38 -0.02 1.52 16 41 H 0.05 1.89 6.02 -2.39 -0.01 1.87 16 Total: -1.00 -56.93 301.59 2.45 -54.47 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.27 Total: 20.85 kcal Atomic # 6 Polarization: -44.30 SS G_CDS: 2.20 Total: -42.10 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -2.04 Total: -79.00 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -56.93 2.45 -54.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260555750.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.695 kcal (2) G-P(sol) polarization free energy of solvation -56.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds