Wall clock time and date at job start Sun Mar 29 2020 22:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 113.25973 * 2 1 4 4 C 1.53510 * 114.17166 * 132.95124 * 2 1 3 5 5 N 1.47472 * 87.93567 * 139.67088 * 4 2 1 6 6 C 1.46906 * 111.00187 * 221.29686 * 5 4 2 7 7 C 1.52996 * 109.47112 * 295.00087 * 6 5 4 8 8 C 1.52996 * 109.46951 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47365 * 59.99890 * 8 7 6 10 10 C 1.50700 * 109.47379 * 59.99953 * 9 8 7 11 11 H 1.07995 * 120.00303 * 240.00329 * 10 9 8 12 12 C 1.37884 * 120.00061 * 59.99792 * 10 9 8 13 13 N 1.31516 * 119.99692 * 0.02562 * 12 10 9 14 14 Si 1.86791 * 120.00033 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47351 * 60.00428 * 14 12 10 16 16 H 1.48505 * 109.47133 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47136 * 300.00063 * 14 12 10 18 18 C 1.52996 * 109.47176 * 299.99973 * 9 8 7 19 19 C 1.52997 * 109.46907 * 174.99945 * 6 5 4 20 20 C 1.47474 * 87.83857 * 332.99021 * 5 4 2 21 21 H 1.09003 * 109.47194 * 287.04826 * 1 2 3 22 22 H 1.08999 * 109.47141 * 47.05013 * 1 2 3 23 23 H 1.08999 * 109.47471 * 167.05143 * 1 2 3 24 24 H 1.08999 * 109.47635 * 192.95221 * 3 2 1 25 25 H 1.09002 * 109.46634 * 312.95195 * 3 2 1 26 26 H 1.08998 * 109.46919 * 72.94892 * 3 2 1 27 27 H 1.08999 * 113.47644 * 24.90173 * 4 2 1 28 28 H 1.09004 * 113.52990 * 254.44559 * 4 2 1 29 29 H 1.09000 * 109.47043 * 55.00061 * 6 5 4 30 30 H 1.09006 * 109.46822 * 299.99597 * 7 6 5 31 31 H 1.08997 * 109.47474 * 59.99711 * 7 6 5 32 32 H 1.08993 * 109.47243 * 299.99585 * 8 7 6 33 33 H 1.09007 * 109.46984 * 179.97438 * 8 7 6 34 34 H 1.09002 * 109.47083 * 179.97438 * 9 8 7 35 35 H 0.97002 * 119.99578 * 179.97438 * 13 12 10 36 36 H 1.09006 * 109.46822 * 300.00209 * 18 9 8 37 37 H 1.08997 * 109.47474 * 180.02562 * 18 9 8 38 38 H 1.09004 * 109.47394 * 299.99454 * 19 6 5 39 39 H 1.08990 * 109.47621 * 60.00353 * 19 6 5 40 40 H 1.08998 * 113.48515 * 141.77227 * 20 5 4 41 41 H 1.09001 * 113.47583 * 272.24643 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1341 1.4057 0.0000 4 6 2.1585 -0.9543 1.0251 5 7 3.1617 -1.3059 0.0030 6 6 3.4330 -2.7497 0.0063 7 6 4.0807 -3.1439 1.3351 8 6 4.3637 -4.6475 1.3382 9 6 5.3116 -4.9904 0.1872 10 6 6.6045 -4.2356 0.3593 11 1 6.9315 -3.5438 -0.4028 12 6 7.3700 -4.4280 1.4899 13 7 6.9720 -5.2708 2.4178 14 14 8.9723 -3.4919 1.7034 15 1 8.6971 -2.0326 1.7008 16 1 9.6013 -3.8750 2.9929 17 1 9.8925 -3.8242 0.5863 18 6 4.6639 -4.5962 -1.1416 19 6 4.3806 -3.0931 -1.1448 20 6 2.1586 -0.9589 -1.0208 21 1 -0.3634 0.3013 0.9825 22 1 -0.3633 0.7002 -0.7522 23 1 -0.3634 -1.0015 -0.2303 24 1 3.1977 1.3441 -0.2303 25 1 1.6342 2.0159 -0.7522 26 1 2.0007 1.8584 0.9825 27 1 1.5090 -1.7853 1.3000 28 1 2.5812 -0.4453 1.8914 29 1 2.4976 -3.2954 -0.1181 30 1 5.0161 -2.5982 1.4593 31 1 3.4056 -2.8992 2.1551 32 1 3.4286 -5.1935 1.2138 33 1 4.8256 -4.9283 2.2848 34 1 5.5136 -6.0616 0.1897 35 1 7.5108 -5.4064 3.2130 36 1 3.7287 -5.1422 -1.2661 37 1 5.3390 -4.8409 -1.9617 38 1 3.9191 -2.8123 -2.0915 39 1 5.3159 -2.5476 -1.0205 40 1 2.5810 -0.4529 -1.8889 41 1 1.5090 -1.7912 -1.2919 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260933650.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:44 Heat of formation + Delta-G solvation = 8.714771 kcal Electronic energy + Delta-G solvation = -18001.904774 eV Core-core repulsion = 15495.631901 eV Total energy + Delta-G solvation = -2506.272873 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.45371 -37.20586 -33.16758 -31.66776 -29.64399 -28.62376 -27.40343 -25.73140 -25.02721 -23.35637 -21.25236 -20.09253 -18.70930 -18.23240 -15.79563 -15.48872 -14.98796 -14.65704 -14.56274 -13.88562 -13.43128 -13.12657 -12.97820 -12.71214 -12.36078 -12.14860 -11.85363 -11.73261 -11.40438 -11.11204 -10.95533 -10.85480 -10.81307 -10.54780 -10.31490 -10.20554 -10.04246 -9.94853 -9.52588 -9.08028 -8.77771 -8.58383 -8.40810 -8.18040 -5.89508 -3.93043 3.37785 3.41841 3.45603 4.34816 4.38305 4.51760 4.86472 5.22820 5.27323 5.41000 5.47534 5.58874 5.61929 5.69392 5.72765 5.84026 5.85993 5.93593 6.07368 6.08781 6.09724 6.19736 6.26582 6.43056 6.47305 6.55505 6.62559 6.71026 6.81196 6.87530 6.95735 7.17851 7.27949 7.45465 7.58756 7.73952 7.81835 8.00363 8.22391 8.56528 9.08747 9.69746 11.16594 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.031773 B = 0.006759 C = 0.006324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.044067 B = 4141.857615 C = 4426.763108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 C -0.118 4.118 4 C 0.010 3.990 5 N -0.462 5.462 6 C 0.060 3.940 7 C -0.090 4.090 8 C -0.107 4.107 9 C 0.044 3.956 10 C -0.497 4.497 11 H 0.055 0.945 12 C 0.061 3.939 13 N -0.894 5.894 14 Si 0.884 3.116 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.279 1.279 18 C -0.107 4.107 19 C -0.092 4.092 20 C 0.006 3.994 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.031 0.969 30 H 0.078 0.922 31 H 0.028 0.972 32 H 0.010 0.990 33 H 0.092 0.908 34 H 0.023 0.977 35 H 0.258 0.742 36 H 0.030 0.970 37 H 0.047 0.953 38 H 0.032 0.968 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.348 8.798 -3.972 14.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.100 4.100 3 C -0.175 4.175 4 C -0.119 4.119 5 N -0.184 5.184 6 C -0.048 4.048 7 C -0.128 4.128 8 C -0.145 4.145 9 C 0.025 3.975 10 C -0.536 4.536 11 H 0.073 0.927 12 C -0.140 4.140 13 N -0.533 5.533 14 Si 0.713 3.287 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.205 1.205 18 C -0.145 4.145 19 C -0.130 4.130 20 C -0.123 4.123 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.047 0.953 32 H 0.029 0.971 33 H 0.110 0.890 34 H 0.041 0.959 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.591 9.001 -3.795 14.408 hybrid contribution 0.122 -0.102 0.210 0.264 sum -10.469 8.899 -3.585 14.200 Atomic orbital electron populations 1.21712 0.94235 1.01598 1.01667 1.22044 0.94652 0.95575 0.97687 1.21443 1.01468 0.93429 1.01190 1.23810 0.93860 0.97625 0.96650 1.68958 1.28088 1.18231 1.03133 1.22246 0.97266 0.86616 0.98688 1.21369 1.00011 0.98905 0.92501 1.21514 0.96178 0.92628 1.04200 1.18685 0.93391 0.96415 0.88968 1.21109 1.04568 1.23859 1.04013 0.92729 1.24926 0.97554 0.95329 0.96163 1.69861 1.38187 1.35929 1.09340 0.86777 0.84264 0.80553 0.77143 1.20286 1.21494 1.20460 1.21550 0.98151 0.94360 1.00405 1.21319 0.99557 0.97539 0.94550 1.23902 0.94026 0.97691 0.96655 0.92465 0.92573 0.92756 0.91351 0.92942 0.92673 0.91830 0.90256 0.95149 0.90353 0.95280 0.97100 0.88973 0.95868 0.93194 0.95151 0.93441 0.94933 0.90459 0.90401 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 9.29 37.15 0.35 -1.00 16 2 C -0.10 -1.20 1.52 -153.98 -0.23 -1.44 16 3 C -0.12 -1.33 9.22 37.16 0.34 -0.99 16 4 C 0.01 0.14 5.73 -7.56 -0.04 0.10 16 5 N -0.46 -7.82 5.94 -236.58 -1.41 -9.22 16 6 C 0.06 1.14 1.55 -67.71 -0.11 1.04 16 7 C -0.09 -1.95 4.97 -26.74 -0.13 -2.09 16 8 C -0.11 -2.55 5.24 -26.73 -0.14 -2.69 16 9 C 0.04 1.10 2.59 -91.77 -0.24 0.86 16 10 C -0.50 -13.47 6.61 -34.44 -0.23 -13.70 16 11 H 0.05 1.48 6.71 -52.49 -0.35 1.13 16 12 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 13 N -0.89 -25.61 11.32 55.43 0.63 -24.98 16 14 Si 0.88 21.61 29.54 -169.99 -5.02 16.59 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 C -0.11 -2.27 5.41 -26.76 -0.14 -2.42 16 19 C -0.09 -1.83 5.14 -26.76 -0.14 -1.97 16 20 C 0.01 0.09 6.36 -7.55 -0.05 0.04 16 21 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 23 H 0.05 0.54 7.90 -51.93 -0.41 0.13 16 24 H 0.07 0.88 7.93 -51.93 -0.41 0.46 16 25 H 0.05 0.51 8.13 -51.93 -0.42 0.09 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.92 7.80 -51.93 -0.40 0.52 16 28 H 0.08 1.17 8.12 -51.93 -0.42 0.75 16 29 H 0.03 0.57 7.56 -51.93 -0.39 0.18 16 30 H 0.08 1.93 7.22 -51.93 -0.37 1.55 16 31 H 0.03 0.58 7.34 -51.93 -0.38 0.20 16 32 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 34 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.03 0.58 7.85 -51.93 -0.41 0.17 16 39 H 0.08 1.72 6.62 -51.93 -0.34 1.37 16 40 H 0.08 1.06 8.12 -51.93 -0.42 0.64 16 41 H 0.06 0.85 7.41 -51.93 -0.38 0.47 16 LS Contribution 307.11 15.07 4.63 4.63 Total: -1.00 -27.73 307.11 -9.57 -37.30 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -7.54 Total: -1.64 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: -0.86 Total: -22.67 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: -0.78 Total: -34.20 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.73 -9.57 -37.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260933650.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.010 kcal (2) G-P(sol) polarization free energy of solvation -27.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds