Wall clock time and date at job start Sun Mar 29 2020 22:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 113.25973 * 2 1 4 4 C 1.53510 * 114.17166 * 132.95124 * 2 1 3 5 5 N 1.47472 * 87.93567 * 139.67088 * 4 2 1 6 6 C 1.46906 * 111.00187 * 221.29686 * 5 4 2 7 7 C 1.52996 * 109.47112 * 295.00087 * 6 5 4 8 8 C 1.52996 * 109.46951 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47365 * 59.99890 * 8 7 6 10 10 C 1.50700 * 109.47379 * 59.99953 * 9 8 7 11 11 H 1.07995 * 120.00303 * 240.00329 * 10 9 8 12 12 C 1.37884 * 120.00061 * 59.99792 * 10 9 8 13 13 N 1.31516 * 119.99692 * 0.02562 * 12 10 9 14 14 Si 1.86791 * 120.00033 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47351 * 60.00428 * 14 12 10 16 16 H 1.48505 * 109.47133 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47136 * 300.00063 * 14 12 10 18 18 C 1.52996 * 109.47176 * 299.99973 * 9 8 7 19 19 C 1.52997 * 109.46907 * 174.99945 * 6 5 4 20 20 C 1.47474 * 87.83857 * 332.99021 * 5 4 2 21 21 H 1.09003 * 109.47194 * 287.04826 * 1 2 3 22 22 H 1.08999 * 109.47141 * 47.05013 * 1 2 3 23 23 H 1.08999 * 109.47471 * 167.05143 * 1 2 3 24 24 H 1.08999 * 109.47635 * 192.95221 * 3 2 1 25 25 H 1.09002 * 109.46634 * 312.95195 * 3 2 1 26 26 H 1.08998 * 109.46919 * 72.94892 * 3 2 1 27 27 H 1.08999 * 113.47644 * 24.90173 * 4 2 1 28 28 H 1.09004 * 113.52990 * 254.44559 * 4 2 1 29 29 H 1.09000 * 109.47043 * 55.00061 * 6 5 4 30 30 H 1.09006 * 109.46822 * 299.99597 * 7 6 5 31 31 H 1.08997 * 109.47474 * 59.99711 * 7 6 5 32 32 H 1.08993 * 109.47243 * 299.99585 * 8 7 6 33 33 H 1.09007 * 109.46984 * 179.97438 * 8 7 6 34 34 H 1.09002 * 109.47083 * 179.97438 * 9 8 7 35 35 H 0.97002 * 119.99578 * 179.97438 * 13 12 10 36 36 H 1.09006 * 109.46822 * 300.00209 * 18 9 8 37 37 H 1.08997 * 109.47474 * 180.02562 * 18 9 8 38 38 H 1.09004 * 109.47394 * 299.99454 * 19 6 5 39 39 H 1.08990 * 109.47621 * 60.00353 * 19 6 5 40 40 H 1.08998 * 113.48515 * 141.77227 * 20 5 4 41 41 H 1.09001 * 113.47583 * 272.24643 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1341 1.4057 0.0000 4 6 2.1585 -0.9543 1.0251 5 7 3.1617 -1.3059 0.0030 6 6 3.4330 -2.7497 0.0063 7 6 4.0807 -3.1439 1.3351 8 6 4.3637 -4.6475 1.3382 9 6 5.3116 -4.9904 0.1872 10 6 6.6045 -4.2356 0.3593 11 1 6.9315 -3.5438 -0.4028 12 6 7.3700 -4.4280 1.4899 13 7 6.9720 -5.2708 2.4178 14 14 8.9723 -3.4919 1.7034 15 1 8.6971 -2.0326 1.7008 16 1 9.6013 -3.8750 2.9929 17 1 9.8925 -3.8242 0.5863 18 6 4.6639 -4.5962 -1.1416 19 6 4.3806 -3.0931 -1.1448 20 6 2.1586 -0.9589 -1.0208 21 1 -0.3634 0.3013 0.9825 22 1 -0.3633 0.7002 -0.7522 23 1 -0.3634 -1.0015 -0.2303 24 1 3.1977 1.3441 -0.2303 25 1 1.6342 2.0159 -0.7522 26 1 2.0007 1.8584 0.9825 27 1 1.5090 -1.7853 1.3000 28 1 2.5812 -0.4453 1.8914 29 1 2.4976 -3.2954 -0.1181 30 1 5.0161 -2.5982 1.4593 31 1 3.4056 -2.8992 2.1551 32 1 3.4286 -5.1935 1.2138 33 1 4.8256 -4.9283 2.2848 34 1 5.5136 -6.0616 0.1897 35 1 7.5108 -5.4064 3.2130 36 1 3.7287 -5.1422 -1.2661 37 1 5.3390 -4.8409 -1.9617 38 1 3.9191 -2.8123 -2.0915 39 1 5.3159 -2.5476 -1.0205 40 1 2.5810 -0.4529 -1.8889 41 1 1.5090 -1.7912 -1.2919 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260933650.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:43 Heat of formation + Delta-G solvation = -7.245932 kcal Electronic energy + Delta-G solvation = -18002.596882 eV Core-core repulsion = 15495.631901 eV Total energy + Delta-G solvation = -2506.964981 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.66765 -38.90061 -34.84279 -33.29435 -31.40103 -30.20905 -28.23304 -26.97178 -26.89123 -24.80350 -22.98971 -21.67331 -20.52001 -19.30742 -17.78986 -16.88776 -16.58893 -16.14454 -15.74772 -15.54174 -14.81481 -14.70627 -14.45914 -14.14812 -13.52400 -13.40431 -13.31013 -12.96593 -12.82467 -12.78193 -12.68225 -12.51228 -12.33823 -12.15878 -11.94153 -11.77060 -11.53885 -11.40918 -11.02596 -10.84703 -10.68811 -10.46163 -10.27710 -9.66857 -8.03039 -6.12251 1.40525 1.41785 1.48457 2.45898 3.14434 3.25228 3.37537 3.85420 3.99948 4.06167 4.18689 4.36279 4.47127 4.52346 4.60224 4.67348 4.76705 4.78026 4.84377 4.85197 4.87845 4.90387 4.95161 5.01602 5.09211 5.16681 5.18238 5.21499 5.32408 5.41909 5.52908 5.54123 5.56852 5.65451 5.68161 5.74090 5.96751 6.20664 6.32407 6.46443 6.96368 7.53056 9.01802 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.031773 B = 0.006759 C = 0.006324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.044067 B = 4141.857615 C = 4426.763108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.084 4.084 3 C -0.117 4.117 4 C 0.003 3.997 5 N -0.485 5.485 6 C 0.071 3.929 7 C -0.079 4.079 8 C -0.102 4.102 9 C 0.038 3.962 10 C -0.504 4.504 11 H 0.050 0.950 12 C 0.014 3.986 13 N -0.920 5.920 14 Si 0.940 3.060 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.101 4.101 19 C -0.084 4.084 20 C 0.006 3.994 21 H 0.065 0.935 22 H 0.071 0.929 23 H 0.054 0.946 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.026 0.974 33 H 0.058 0.942 34 H -0.010 1.010 35 H 0.257 0.743 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.082 0.918 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.917 10.327 -4.974 17.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.084 4.084 3 C -0.174 4.174 4 C -0.126 4.126 5 N -0.207 5.207 6 C -0.038 4.038 7 C -0.117 4.117 8 C -0.140 4.140 9 C 0.019 3.981 10 C -0.542 4.542 11 H 0.068 0.932 12 C -0.184 4.184 13 N -0.560 5.560 14 Si 0.767 3.233 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.139 4.139 19 C -0.122 4.122 20 C -0.123 4.123 21 H 0.084 0.916 22 H 0.090 0.910 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.008 0.992 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.100 0.900 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.162 10.537 -4.809 16.794 hybrid contribution 0.598 -0.592 0.524 0.992 sum -11.563 9.945 -4.284 15.842 Atomic orbital electron populations 1.21688 0.92110 1.02227 1.02759 1.22005 0.96167 0.95123 0.95130 1.21444 1.00350 0.93315 1.02302 1.23907 0.93550 0.98457 0.96660 1.68936 1.30189 1.16205 1.05363 1.22028 0.96979 0.88537 0.96254 1.21170 0.98836 0.96677 0.94992 1.21367 0.96197 0.94484 1.02002 1.18692 0.93521 0.94173 0.91677 1.21346 1.05503 1.23585 1.03754 0.93225 1.25602 1.00484 0.96212 0.96093 1.70000 1.39198 1.37158 1.09668 0.85883 0.80942 0.79288 0.77201 1.20143 1.21181 1.19787 1.21455 0.98692 0.95751 0.98014 1.21211 0.98794 0.95892 0.96332 1.23990 0.93390 0.98392 0.96533 0.91638 0.90985 0.92657 0.93334 0.90959 0.91945 0.91610 0.90963 0.94086 0.93870 0.94148 0.95549 0.92307 0.99170 0.93384 0.93179 0.93400 0.92296 0.93158 0.89988 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 9.29 71.98 0.67 -1.46 16 2 C -0.08 -1.80 1.52 -51.84 -0.08 -1.88 16 3 C -0.12 -2.33 9.22 71.98 0.66 -1.67 16 4 C 0.00 0.09 5.73 83.57 0.48 0.57 16 5 N -0.49 -15.64 5.94 -902.40 -5.36 -21.00 16 6 C 0.07 2.59 1.55 44.91 0.07 2.66 16 7 C -0.08 -3.43 4.97 30.59 0.15 -3.28 16 8 C -0.10 -4.94 5.24 30.59 0.16 -4.78 16 9 C 0.04 1.93 2.59 -11.54 -0.03 1.90 16 10 C -0.50 -27.87 6.61 25.60 0.17 -27.70 16 11 H 0.05 2.74 6.71 -2.91 -0.02 2.72 16 12 C 0.01 0.77 5.30 84.66 0.45 1.22 16 13 N -0.92 -54.17 11.32 21.45 0.24 -53.92 16 14 Si 0.94 45.00 29.54 68.60 2.03 47.03 16 15 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 16 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 17 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 18 C -0.10 -4.23 5.41 30.58 0.17 -4.06 16 19 C -0.08 -3.26 5.14 30.58 0.16 -3.11 16 20 C 0.01 0.14 6.36 83.57 0.53 0.68 16 21 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.07 0.97 8.13 -2.39 -0.02 0.95 16 23 H 0.05 0.91 7.90 -2.39 -0.02 0.89 16 24 H 0.05 1.16 7.93 -2.39 -0.02 1.14 16 25 H 0.07 1.16 8.13 -2.39 -0.02 1.14 16 26 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.07 1.77 7.80 -2.39 -0.02 1.75 16 28 H 0.07 2.05 8.12 -2.38 -0.02 2.03 16 29 H 0.04 1.43 7.56 -2.39 -0.02 1.42 16 30 H 0.04 2.17 7.22 -2.38 -0.02 2.15 16 31 H 0.04 1.62 7.34 -2.39 -0.02 1.60 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 3.24 6.07 -2.38 -0.01 3.23 16 34 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 35 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 36 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.06 1.97 7.85 -2.39 -0.02 1.95 16 39 H 0.05 2.22 6.62 -2.39 -0.02 2.20 16 40 H 0.08 1.99 8.12 -2.39 -0.02 1.98 16 41 H 0.07 1.67 7.41 -2.39 -0.02 1.65 16 Total: -1.00 -60.26 307.11 1.42 -58.84 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.96 Total: 9.96 kcal Atomic # 6 Polarization: -44.46 SS G_CDS: 3.56 Total: -40.90 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: -5.12 Total: -74.93 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -60.26 1.42 -58.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260933650.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.595 kcal (2) G-P(sol) polarization free energy of solvation -60.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds