Wall clock time and date at job start Sun Mar 29 2020 21:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00291 * 2 1 4 4 H 1.48501 * 109.47093 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47147 * 299.99942 * 3 2 1 6 6 H 1.48504 * 109.46924 * 60.00054 * 3 2 1 7 7 C 1.37885 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00070 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99941 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47381 * 180.02562 * 9 7 2 11 11 C 1.53113 * 109.52405 * 174.99854 * 10 9 7 12 12 C 1.53043 * 109.27906 * 177.55764 * 11 10 9 13 13 N 1.46848 * 109.52215 * 300.82172 * 12 11 10 14 14 C 1.46898 * 110.99765 * 185.83900 * 13 12 11 15 15 C 1.53006 * 109.47006 * 169.99646 * 14 13 12 16 16 C 1.53779 * 113.61588 * 274.13610 * 15 14 13 17 17 C 1.53951 * 87.01779 * 220.04774 * 16 15 14 18 18 C 1.53771 * 87.11252 * 25.36423 * 17 16 15 19 19 C 1.46844 * 111.19971 * 61.73818 * 13 12 11 20 20 C 1.53042 * 109.52548 * 298.26097 * 19 13 12 21 21 H 0.97002 * 119.99699 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47556 * 59.99272 * 9 7 2 23 23 H 1.09010 * 109.46679 * 300.00167 * 9 7 2 24 24 H 1.09001 * 109.52222 * 54.86760 * 10 9 7 25 25 H 1.09002 * 109.50807 * 57.61983 * 11 10 9 26 26 H 1.08997 * 109.53546 * 297.51863 * 11 10 9 27 27 H 1.08996 * 109.46221 * 180.80466 * 12 11 10 28 28 H 1.08995 * 109.45093 * 60.83157 * 12 11 10 29 29 H 1.09001 * 109.47062 * 49.99900 * 14 13 12 30 30 H 1.08993 * 109.47084 * 289.99347 * 14 13 12 31 31 H 1.09006 * 112.84599 * 45.33402 * 15 14 13 32 32 H 1.08999 * 113.61559 * 334.56813 * 16 15 14 33 33 H 1.09002 * 113.60988 * 105.46679 * 16 15 14 34 34 H 1.09009 * 113.53661 * 270.80929 * 17 16 15 35 35 H 1.09003 * 113.74082 * 139.94951 * 17 16 15 36 36 H 1.09006 * 113.61359 * 220.08710 * 18 17 16 37 37 H 1.09000 * 113.61519 * 89.18865 * 18 17 16 38 38 H 1.08998 * 109.45974 * 58.27652 * 19 13 12 39 39 H 1.09003 * 109.46302 * 178.23916 * 19 13 12 40 40 H 1.09005 * 109.49739 * 299.23563 * 20 19 13 41 41 H 1.08994 * 109.50278 * 179.12269 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4848 -4.9853 0.1232 12 6 2.4790 -6.1471 0.0616 13 7 3.2104 -6.1002 -1.2109 14 6 4.0744 -7.2781 -1.3652 15 6 4.6242 -7.3240 -2.7924 16 6 3.6849 -8.0186 -3.7924 17 6 4.9435 -8.6558 -4.4088 18 6 5.6117 -8.4775 -3.0354 19 6 3.9859 -4.8591 -1.3322 20 6 3.0366 -3.6588 -1.3122 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5563 -0.8919 23 1 0.6239 -2.5574 0.8881 24 1 2.9306 -3.5552 0.8393 25 1 0.7710 -5.0734 -0.6959 26 1 0.9527 -5.0117 1.0741 27 1 1.9393 -7.0912 0.1357 28 1 3.1840 -6.0659 0.8889 29 1 3.4961 -8.1811 -1.1695 30 1 4.9022 -7.2165 -0.6589 31 1 4.9898 -6.3564 -3.1364 32 1 3.0117 -8.7405 -3.3300 33 1 3.1716 -7.3278 -4.4614 34 1 5.3957 -8.0526 -5.1961 35 1 4.8108 -9.6984 -4.6978 36 1 6.6518 -8.1568 -3.0942 37 1 5.4663 -9.3251 -2.3657 38 1 4.6839 -4.7841 -0.4984 39 1 4.5408 -4.8678 -2.2704 40 1 2.3472 -3.7261 -2.1539 41 1 3.6138 -2.7372 -1.3866 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260981704.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:40 Heat of formation + Delta-G solvation = -5.063446 kcal Electronic energy + Delta-G solvation = -17211.410933 eV Core-core repulsion = 14704.540592 eV Total energy + Delta-G solvation = -2506.870342 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.42672 -37.92732 -34.31431 -32.21909 -30.35805 -28.88926 -26.58719 -25.62110 -23.88430 -22.80256 -21.86329 -20.51364 -19.26824 -18.84873 -16.22710 -15.98144 -15.26170 -15.05411 -14.45423 -14.39918 -13.70577 -13.40520 -13.02089 -12.95483 -12.50079 -12.40174 -11.86788 -11.79140 -11.64855 -11.41235 -11.05205 -10.76178 -10.67535 -10.59712 -10.52250 -10.28976 -10.21715 -10.09722 -9.86474 -9.47108 -8.98463 -8.82220 -8.29697 -7.98062 -5.94457 -3.95626 3.33469 3.41059 3.44779 4.07973 4.50061 4.58707 4.66049 4.73394 4.90078 5.26529 5.38127 5.40390 5.43449 5.52563 5.60754 5.64341 5.67407 5.72973 5.79021 5.81642 5.87839 5.95072 6.04164 6.06349 6.19273 6.24487 6.30147 6.47704 6.51848 6.64649 6.73686 7.04072 7.16428 7.25221 7.44246 7.47638 7.74762 7.91708 8.06915 8.50301 9.11294 9.67702 11.16980 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.040660 B = 0.004683 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.472709 B = 5978.095455 C = 6292.152873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.027 3.973 10 C -0.081 4.081 11 C -0.112 4.112 12 C 0.060 3.940 13 N -0.534 5.534 14 C 0.065 3.935 15 C -0.106 4.106 16 C -0.125 4.125 17 C -0.145 4.145 18 C -0.138 4.138 19 C 0.054 3.946 20 C -0.099 4.099 21 H 0.258 0.742 22 H 0.017 0.983 23 H 0.014 0.986 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.026 0.974 29 H 0.069 0.931 30 H 0.027 0.973 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.025 0.975 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.804 -16.288 -4.801 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.100 4.100 11 C -0.149 4.149 12 C -0.068 4.068 13 N -0.259 5.259 14 C -0.063 4.063 15 C -0.125 4.125 16 C -0.163 4.163 17 C -0.183 4.183 18 C -0.176 4.176 19 C -0.073 4.073 20 C -0.137 4.137 21 H 0.068 0.932 22 H 0.035 0.965 23 H 0.032 0.968 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.043 0.957 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.309 -16.174 -5.169 18.904 hybrid contribution 1.024 1.010 0.716 1.607 sum 9.333 -15.164 -4.453 18.355 Atomic orbital electron populations 1.69978 1.06021 1.26296 1.51310 1.25020 0.94791 0.99115 0.95588 0.86604 0.80142 0.84150 0.77515 1.19810 1.21084 1.21134 1.21302 0.92954 0.91048 1.49820 0.92682 1.19123 0.93647 0.91089 0.97095 1.21228 0.97865 0.94763 0.96144 1.21685 0.97545 0.94311 1.01391 1.22091 0.96271 0.99271 0.89178 1.61923 1.27984 1.01738 1.34240 1.22081 0.94866 0.93838 0.95490 1.22582 0.96588 0.98238 0.95042 1.22862 0.95926 0.99318 0.98147 1.22862 0.97958 1.00726 0.96728 1.22932 0.98504 0.98767 0.97408 1.22243 0.95325 0.90117 0.99650 1.21540 0.97844 0.95511 0.98801 0.93182 0.96505 0.96811 0.93151 0.91636 0.92258 0.91822 0.95620 0.91239 0.95440 0.88991 0.90376 0.91436 0.90467 0.91838 0.91830 0.90370 0.95716 0.91511 0.91911 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 7 C -0.51 -14.49 8.45 -34.44 -0.29 -14.78 16 8 H 0.05 1.52 7.08 -52.49 -0.37 1.14 16 9 C 0.03 0.71 4.45 -27.89 -0.12 0.59 16 10 C -0.08 -1.70 2.20 -90.50 -0.20 -1.90 16 11 C -0.11 -1.99 5.38 -26.65 -0.14 -2.14 16 12 C 0.06 0.91 5.46 -3.83 -0.02 0.89 16 13 N -0.53 -7.99 4.66 -234.67 -1.09 -9.08 16 14 C 0.07 0.80 4.78 -3.82 -0.02 0.78 16 15 C -0.11 -1.16 3.69 -89.81 -0.33 -1.49 16 16 C -0.13 -1.30 7.65 -25.83 -0.20 -1.50 16 17 C -0.15 -1.29 8.09 -25.83 -0.21 -1.50 16 18 C -0.14 -1.26 7.64 -25.93 -0.20 -1.46 16 19 C 0.05 0.86 5.31 -3.83 -0.02 0.84 16 20 C -0.10 -1.91 5.15 -26.65 -0.14 -2.05 16 21 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.01 0.38 8.14 -51.92 -0.42 -0.04 16 24 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 0.86 8.01 -51.93 -0.42 0.45 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.80 7.72 -51.93 -0.40 0.39 16 30 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 31 H 0.09 1.09 6.19 -51.93 -0.32 0.77 16 32 H 0.08 0.80 7.92 -51.93 -0.41 0.39 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.97 6.09 -51.93 -0.32 0.66 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.07 1.46 7.05 -51.93 -0.37 1.09 16 LS Contribution 314.81 15.07 4.74 4.74 Total: -1.00 -29.47 314.81 -10.27 -39.75 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -7.65 Total: -3.53 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -1.99 Total: -22.21 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.36 Total: -35.57 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.47 -10.27 -39.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260981704.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.682 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds