Wall clock time and date at job start Sun Mar 29 2020 21:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00291 * 2 1 4 4 H 1.48501 * 109.47093 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47147 * 299.99942 * 3 2 1 6 6 H 1.48504 * 109.46924 * 60.00054 * 3 2 1 7 7 C 1.37885 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00070 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99941 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47381 * 180.02562 * 9 7 2 11 11 C 1.53113 * 109.52405 * 174.99854 * 10 9 7 12 12 C 1.53043 * 109.27906 * 177.55764 * 11 10 9 13 13 N 1.46848 * 109.52215 * 300.82172 * 12 11 10 14 14 C 1.46898 * 110.99765 * 185.83900 * 13 12 11 15 15 C 1.53006 * 109.47006 * 169.99646 * 14 13 12 16 16 C 1.53779 * 113.61588 * 274.13610 * 15 14 13 17 17 C 1.53951 * 87.01779 * 220.04774 * 16 15 14 18 18 C 1.53771 * 87.11252 * 25.36423 * 17 16 15 19 19 C 1.46844 * 111.19971 * 61.73818 * 13 12 11 20 20 C 1.53042 * 109.52548 * 298.26097 * 19 13 12 21 21 H 0.97002 * 119.99699 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47556 * 59.99272 * 9 7 2 23 23 H 1.09010 * 109.46679 * 300.00167 * 9 7 2 24 24 H 1.09001 * 109.52222 * 54.86760 * 10 9 7 25 25 H 1.09002 * 109.50807 * 57.61983 * 11 10 9 26 26 H 1.08997 * 109.53546 * 297.51863 * 11 10 9 27 27 H 1.08996 * 109.46221 * 180.80466 * 12 11 10 28 28 H 1.08995 * 109.45093 * 60.83157 * 12 11 10 29 29 H 1.09001 * 109.47062 * 49.99900 * 14 13 12 30 30 H 1.08993 * 109.47084 * 289.99347 * 14 13 12 31 31 H 1.09006 * 112.84599 * 45.33402 * 15 14 13 32 32 H 1.08999 * 113.61559 * 334.56813 * 16 15 14 33 33 H 1.09002 * 113.60988 * 105.46679 * 16 15 14 34 34 H 1.09009 * 113.53661 * 270.80929 * 17 16 15 35 35 H 1.09003 * 113.74082 * 139.94951 * 17 16 15 36 36 H 1.09006 * 113.61359 * 220.08710 * 18 17 16 37 37 H 1.09000 * 113.61519 * 89.18865 * 18 17 16 38 38 H 1.08998 * 109.45974 * 58.27652 * 19 13 12 39 39 H 1.09003 * 109.46302 * 178.23916 * 19 13 12 40 40 H 1.09005 * 109.49739 * 299.23563 * 20 19 13 41 41 H 1.08994 * 109.50278 * 179.12269 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4848 -4.9853 0.1232 12 6 2.4790 -6.1471 0.0616 13 7 3.2104 -6.1002 -1.2109 14 6 4.0744 -7.2781 -1.3652 15 6 4.6242 -7.3240 -2.7924 16 6 3.6849 -8.0186 -3.7924 17 6 4.9435 -8.6558 -4.4088 18 6 5.6117 -8.4775 -3.0354 19 6 3.9859 -4.8591 -1.3322 20 6 3.0366 -3.6588 -1.3122 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5563 -0.8919 23 1 0.6239 -2.5574 0.8881 24 1 2.9306 -3.5552 0.8393 25 1 0.7710 -5.0734 -0.6959 26 1 0.9527 -5.0117 1.0741 27 1 1.9393 -7.0912 0.1357 28 1 3.1840 -6.0659 0.8889 29 1 3.4961 -8.1811 -1.1695 30 1 4.9022 -7.2165 -0.6589 31 1 4.9898 -6.3564 -3.1364 32 1 3.0117 -8.7405 -3.3300 33 1 3.1716 -7.3278 -4.4614 34 1 5.3957 -8.0526 -5.1961 35 1 4.8108 -9.6984 -4.6978 36 1 6.6518 -8.1568 -3.0942 37 1 5.4663 -9.3251 -2.3657 38 1 4.6839 -4.7841 -0.4984 39 1 4.5408 -4.8678 -2.2704 40 1 2.3472 -3.7261 -2.1539 41 1 3.6138 -2.7372 -1.3866 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260981704.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:40 Heat of formation + Delta-G solvation = -21.183673 kcal Electronic energy + Delta-G solvation = -17212.109959 eV Core-core repulsion = 14704.540592 eV Total energy + Delta-G solvation = -2507.569367 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.48886 -39.06677 -35.99432 -34.17050 -31.75225 -30.43664 -28.06675 -26.37820 -25.56563 -24.18845 -23.12534 -21.97100 -20.43028 -20.07731 -18.42687 -17.06868 -16.50951 -16.26446 -16.05670 -15.48737 -15.14236 -14.86186 -14.47926 -14.32667 -13.95362 -13.50120 -13.22614 -13.20998 -13.03449 -12.76600 -12.59935 -12.48997 -12.19181 -12.06834 -11.97683 -11.66576 -11.40984 -11.26422 -11.05734 -10.97098 -10.80806 -10.65382 -10.51889 -9.14939 -8.17419 -6.27103 1.39287 1.39462 1.52581 2.41716 2.97461 3.15735 3.79243 3.86905 3.90265 4.05778 4.07993 4.10697 4.15840 4.35118 4.50165 4.55398 4.63993 4.67954 4.72193 4.81270 4.89106 4.93219 4.94482 4.96747 5.07266 5.11650 5.14864 5.17421 5.24335 5.37963 5.41031 5.45755 5.48380 5.57928 5.69481 5.81245 5.89521 6.21689 6.28170 6.33176 6.89158 7.41313 8.94822 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.040660 B = 0.004683 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.472709 B = 5978.095455 C = 6292.152873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.961 3.039 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.033 3.967 10 C -0.075 4.075 11 C -0.107 4.107 12 C 0.066 3.934 13 N -0.545 5.545 14 C 0.068 3.932 15 C -0.112 4.112 16 C -0.129 4.129 17 C -0.139 4.139 18 C -0.129 4.129 19 C 0.065 3.935 20 C -0.093 4.093 21 H 0.262 0.738 22 H -0.013 1.013 23 H -0.015 1.015 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.030 0.970 29 H 0.082 0.918 30 H 0.032 0.968 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.027 0.973 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.693 -17.497 -4.985 21.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.786 3.214 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.567 4.567 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.094 4.094 11 C -0.145 4.145 12 C -0.061 4.061 13 N -0.270 5.270 14 C -0.059 4.059 15 C -0.130 4.130 16 C -0.167 4.167 17 C -0.177 4.177 18 C -0.167 4.167 19 C -0.062 4.062 20 C -0.131 4.131 21 H 0.071 0.929 22 H 0.006 0.994 23 H 0.004 0.996 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.106 0.894 28 H 0.049 0.951 29 H 0.100 0.900 30 H 0.050 0.950 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.046 0.954 39 H 0.101 0.899 40 H 0.066 0.934 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.211 -17.402 -5.356 20.876 hybrid contribution 0.374 1.377 0.767 1.620 sum 10.585 -16.026 -4.588 19.746 Atomic orbital electron populations 1.70114 1.07814 1.27495 1.52239 1.25964 0.95700 1.03238 0.95048 0.85453 0.79155 0.79085 0.77698 1.18558 1.20473 1.20496 1.21678 0.93358 0.92139 1.49548 0.92223 1.19014 0.94011 0.93106 0.94235 1.21086 0.96909 0.94393 0.96984 1.21595 0.97860 0.93933 1.01084 1.22015 0.95807 0.98729 0.89572 1.61896 1.28715 1.02254 1.34088 1.22151 0.94673 0.92785 0.96323 1.22599 0.97536 0.98545 0.94341 1.22889 0.96458 0.99269 0.98064 1.22840 0.96770 1.01322 0.96755 1.22906 0.98307 0.98050 0.97470 1.22064 0.94361 0.89164 1.00651 1.21410 0.97827 0.96805 0.97092 0.92936 0.99431 0.99614 0.93538 0.92748 0.92054 0.89424 0.95129 0.89987 0.94994 0.90071 0.90064 0.92812 0.90306 0.90659 0.91246 0.89351 0.95448 0.89929 0.93398 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.24 13.29 21.45 0.28 -57.95 16 2 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 3 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.53 -30.57 8.45 25.60 0.22 -30.35 16 8 H 0.06 3.32 7.08 -2.91 -0.02 3.30 16 9 C 0.03 1.82 4.45 29.85 0.13 1.95 16 10 C -0.08 -3.20 2.20 -10.72 -0.02 -3.22 16 11 C -0.11 -3.82 5.38 30.65 0.16 -3.65 16 12 C 0.07 1.89 5.46 86.33 0.47 2.36 16 13 N -0.54 -15.26 4.66 -896.36 -4.17 -19.43 16 14 C 0.07 1.47 4.78 86.31 0.41 1.89 16 15 C -0.11 -2.20 3.69 -10.27 -0.04 -2.23 16 16 C -0.13 -2.45 7.65 31.18 0.24 -2.21 16 17 C -0.14 -2.12 8.09 31.17 0.25 -1.87 16 18 C -0.13 -1.97 7.64 31.12 0.24 -1.73 16 19 C 0.07 1.99 5.31 86.33 0.46 2.45 16 20 C -0.09 -3.64 5.15 30.65 0.16 -3.48 16 21 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 22 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 23 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 24 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.09 2.11 8.01 -2.39 -0.02 2.09 16 28 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.08 1.60 7.72 -2.39 -0.02 1.58 16 30 H 0.03 0.68 8.12 -2.39 -0.02 0.66 16 31 H 0.08 1.78 6.19 -2.38 -0.01 1.77 16 32 H 0.08 1.48 7.92 -2.39 -0.02 1.46 16 33 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 0.99 8.14 -2.38 -0.02 0.98 16 37 H 0.09 1.19 8.10 -2.39 -0.02 1.17 16 38 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.08 2.28 6.09 -2.39 -0.01 2.26 16 40 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.05 2.29 7.05 -2.39 -0.02 2.27 16 Total: -1.00 -64.03 314.81 2.24 -61.79 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 0.96 Total: 8.27 kcal Atomic # 6 Polarization: -42.93 SS G_CDS: 3.14 Total: -39.78 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -3.89 Total: -77.39 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -64.03 2.24 -61.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260981704.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.611 kcal (2) G-P(sol) polarization free energy of solvation -64.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds