Wall clock time and date at job start Sun Mar 29 2020 21:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46894 * 109.47165 * 2 1 4 4 C 1.46893 * 111.00500 * 298.48682 * 3 2 1 5 5 C 1.50704 * 109.47079 * 293.08980 * 4 3 2 6 6 H 1.08000 * 119.99510 * 354.95005 * 5 4 3 7 7 C 1.37881 * 120.00073 * 174.95269 * 5 4 3 8 8 N 1.31518 * 119.99932 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99975 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47052 * 89.99855 * 9 7 5 11 11 H 1.48496 * 109.47421 * 210.00172 * 9 7 5 12 12 H 1.48504 * 109.47237 * 330.00369 * 9 7 5 13 13 C 1.46908 * 110.99730 * 62.43853 * 3 2 1 14 14 C 1.50702 * 109.46820 * 66.04581 * 13 3 2 15 15 C 1.39873 * 126.04095 * 260.15288 * 14 13 3 16 16 N 1.30835 * 108.20109 * 180.23752 * 15 14 13 17 17 N 1.40080 * 108.20893 * 359.77620 * 16 15 14 18 18 C 1.46505 * 126.03917 * 180.02562 * 17 16 15 19 19 C 1.34951 * 107.92579 * 0.02562 * 17 16 15 20 20 C 1.50695 * 126.12978 * 179.97438 * 19 17 16 21 21 H 1.08998 * 109.46738 * 299.88739 * 1 2 3 22 22 H 1.08999 * 109.47446 * 59.89373 * 1 2 3 23 23 H 1.09004 * 109.46983 * 179.89325 * 1 2 3 24 24 H 1.08999 * 109.46974 * 239.99975 * 2 1 3 25 25 H 1.08997 * 109.47013 * 120.00838 * 2 1 3 26 26 H 1.09001 * 109.47054 * 53.08411 * 4 3 2 27 27 H 1.08999 * 109.47558 * 173.08263 * 4 3 2 28 28 H 0.96992 * 119.99956 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47093 * 306.05128 * 13 3 2 30 30 H 1.08992 * 109.47219 * 186.04086 * 13 3 2 31 31 H 1.07999 * 125.89806 * 0.02562 * 15 14 13 32 32 H 1.08999 * 109.46939 * 269.97778 * 18 17 16 33 33 H 1.09000 * 109.46846 * 29.97762 * 18 17 16 34 34 H 1.09001 * 109.46695 * 149.97569 * 18 17 16 35 35 H 1.08999 * 109.47469 * 90.01709 * 20 19 17 36 36 H 1.08996 * 109.47005 * 210.02307 * 20 19 17 37 37 H 1.09004 * 109.47296 * 330.01821 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5786 2.0994 -1.2053 5 6 2.2476 1.5021 -2.4164 6 1 2.9928 0.7298 -2.2957 7 6 1.9083 1.9416 -3.6785 8 7 1.0012 2.8825 -3.8253 9 14 2.7380 1.2018 -5.1796 10 1 1.9576 0.0286 -5.6487 11 1 2.8027 2.2178 -6.2606 12 1 4.1136 0.7705 -4.8227 13 6 1.5969 2.0928 1.2159 14 6 2.2679 1.4752 2.4156 15 6 1.6906 0.5584 3.3003 16 7 2.5779 0.2573 4.2134 17 7 3.7513 0.9700 3.9354 18 6 4.9929 0.9228 4.7117 19 6 3.5362 1.7077 2.8261 20 6 4.5287 2.6295 2.1657 21 1 -0.3633 0.5121 0.8910 22 1 -0.3634 0.5155 -0.8890 23 1 -0.3633 -1.0277 -0.0019 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5140 0.8899 26 1 0.4970 2.0087 -1.3060 27 1 1.8488 3.1521 -1.1230 28 1 0.7628 3.1920 -4.7131 29 1 0.5151 2.0144 1.3243 30 1 1.8797 3.1428 1.1419 31 1 0.6848 0.1692 3.2419 32 1 4.9664 1.6893 5.4862 33 1 5.0946 -0.0586 5.1750 34 1 5.8413 1.1026 4.0513 35 1 5.1028 2.0741 1.4240 36 1 3.9970 3.4458 1.6769 37 1 5.2044 3.0354 2.9186 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269043253.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:52 Heat of formation + Delta-G solvation = 78.077674 kcal Electronic energy + Delta-G solvation = -17212.008191 eV Core-core repulsion = 14605.202775 eV Total energy + Delta-G solvation = -2606.805416 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.02404 -37.05090 -33.30575 -32.63289 -31.92706 -29.36107 -28.29931 -26.47939 -26.02086 -23.97332 -22.84995 -20.63440 -19.74893 -18.50241 -16.29086 -15.99424 -15.55009 -14.92819 -14.66905 -14.19118 -13.99321 -13.41239 -13.03950 -12.88718 -12.68903 -12.56141 -12.21613 -11.98292 -11.78589 -11.52006 -11.26932 -11.02524 -10.82148 -10.70613 -10.43237 -10.26811 -9.96212 -9.61392 -9.14679 -8.96600 -8.38174 -7.95654 -7.01533 -5.97197 -3.97558 2.13807 2.73240 3.11098 3.34293 3.40637 3.44949 4.47809 4.65602 4.97502 5.12092 5.24913 5.28272 5.33566 5.38098 5.42535 5.77213 5.81925 5.88620 5.95768 6.08304 6.15345 6.25966 6.29809 6.34391 6.57384 6.70391 6.81686 6.96360 7.04773 7.30768 7.41029 7.54605 7.89260 7.98128 8.20144 8.34096 8.67197 9.11427 9.66389 11.13300 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.033848 B = 0.006101 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.034530 B = 4588.161361 C = 4933.617138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.066 3.934 3 N -0.530 5.530 4 C 0.187 3.813 5 C -0.501 4.501 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.126 3.874 14 C -0.215 4.215 15 C 0.054 3.946 16 N -0.311 5.311 17 N -0.383 5.383 18 C 0.105 3.895 19 C 0.099 3.901 20 C -0.084 4.084 21 H 0.044 0.956 22 H 0.067 0.933 23 H 0.044 0.956 24 H 0.075 0.925 25 H 0.051 0.949 26 H 0.003 0.997 27 H 0.023 0.977 28 H 0.260 0.740 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.176 0.824 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.948 -1.874 13.698 14.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.063 4.063 3 N -0.253 5.253 4 C 0.062 3.938 5 C -0.539 4.539 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.003 4.003 14 C -0.227 4.227 15 C -0.131 4.131 16 N -0.132 5.132 17 N -0.167 5.167 18 C -0.036 4.036 19 C -0.028 4.028 20 C -0.143 4.143 21 H 0.063 0.937 22 H 0.086 0.914 23 H 0.063 0.937 24 H 0.093 0.907 25 H 0.069 0.931 26 H 0.020 0.980 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.193 0.807 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.762 -2.457 14.686 15.966 hybrid contribution -0.728 0.059 -1.585 1.745 sum 5.034 -2.398 13.101 14.238 Atomic orbital electron populations 1.22383 0.99665 1.00727 1.01900 1.21866 0.91831 0.91628 1.00937 1.62346 1.59288 1.01825 1.01872 1.19782 0.94654 0.93569 0.85774 1.21162 1.21816 1.20885 0.90069 0.92060 1.24967 0.95353 0.95308 0.98980 1.69956 1.32093 1.29133 1.22827 0.86562 0.79935 0.78734 0.82553 1.20844 1.21372 1.19882 1.20307 0.95767 0.96805 0.87403 1.19878 0.94509 1.06433 1.01860 1.23695 0.99122 0.97260 0.93071 1.77247 0.92412 1.19058 1.24494 1.48302 1.11317 1.35187 1.21918 1.21713 0.82504 1.03637 0.95790 1.20832 0.96567 0.96424 0.88987 1.20383 0.96571 0.97844 0.99481 0.93667 0.91372 0.93707 0.90684 0.93103 0.97976 0.95878 0.93066 0.94814 0.91340 0.80749 0.91363 0.89747 0.89777 0.89736 0.89395 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.46 9.26 37.16 0.34 -3.11 16 2 C 0.07 1.32 5.70 -3.82 -0.02 1.30 16 3 N -0.53 -11.26 4.69 -237.52 -1.11 -12.37 16 4 C 0.19 4.76 4.52 -4.98 -0.02 4.74 16 5 C -0.50 -13.87 8.40 -34.44 -0.29 -14.16 16 6 H 0.06 1.71 7.36 -52.49 -0.39 1.32 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 9 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.13 2.31 4.92 -4.97 -0.02 2.28 16 14 C -0.22 -3.60 4.68 -105.05 -0.49 -4.09 16 15 C 0.05 0.87 11.25 -17.36 -0.20 0.68 16 16 N -0.31 -5.08 12.57 30.62 0.39 -4.70 16 17 N -0.38 -5.55 4.01 -63.88 -0.26 -5.81 16 18 C 0.11 1.00 11.09 59.85 0.66 1.67 16 19 C 0.10 1.51 6.93 -82.26 -0.57 0.94 16 20 C -0.08 -1.08 9.69 36.00 0.35 -0.73 16 21 H 0.04 0.76 6.34 -51.93 -0.33 0.43 16 22 H 0.07 1.44 6.29 -51.93 -0.33 1.12 16 23 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.07 1.64 6.98 -51.93 -0.36 1.27 16 25 H 0.05 0.96 6.64 -51.93 -0.34 0.62 16 26 H 0.00 0.07 6.01 -51.93 -0.31 -0.24 16 27 H 0.02 0.63 7.91 -51.93 -0.41 0.21 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.03 0.61 6.08 -51.93 -0.32 0.29 16 30 H 0.07 1.24 7.27 -51.93 -0.38 0.86 16 31 H 0.18 2.41 8.06 -52.49 -0.42 1.99 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.64 7.66 -51.93 -0.40 0.24 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.09 1.18 7.37 -51.93 -0.38 0.79 16 37 H 0.06 0.58 7.72 -51.93 -0.40 0.17 16 LS Contribution 299.87 15.07 4.52 4.52 Total: -1.00 -31.45 299.87 -6.70 -38.15 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.60 Total: -1.54 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -0.36 Total: -9.06 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.25 Total: -48.66 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.45 -6.70 -38.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269043253.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.227 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds