Wall clock time and date at job start Sun Mar 29 2020 21:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46894 * 109.47165 * 2 1 4 4 C 1.46893 * 111.00500 * 298.48682 * 3 2 1 5 5 C 1.50704 * 109.47079 * 293.08980 * 4 3 2 6 6 H 1.08000 * 119.99510 * 354.95005 * 5 4 3 7 7 C 1.37881 * 120.00073 * 174.95269 * 5 4 3 8 8 N 1.31518 * 119.99932 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99975 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47052 * 89.99855 * 9 7 5 11 11 H 1.48496 * 109.47421 * 210.00172 * 9 7 5 12 12 H 1.48504 * 109.47237 * 330.00369 * 9 7 5 13 13 C 1.46908 * 110.99730 * 62.43853 * 3 2 1 14 14 C 1.50702 * 109.46820 * 66.04581 * 13 3 2 15 15 C 1.39873 * 126.04095 * 260.15288 * 14 13 3 16 16 N 1.30835 * 108.20109 * 180.23752 * 15 14 13 17 17 N 1.40080 * 108.20893 * 359.77620 * 16 15 14 18 18 C 1.46505 * 126.03917 * 180.02562 * 17 16 15 19 19 C 1.34951 * 107.92579 * 0.02562 * 17 16 15 20 20 C 1.50695 * 126.12978 * 179.97438 * 19 17 16 21 21 H 1.08998 * 109.46738 * 299.88739 * 1 2 3 22 22 H 1.08999 * 109.47446 * 59.89373 * 1 2 3 23 23 H 1.09004 * 109.46983 * 179.89325 * 1 2 3 24 24 H 1.08999 * 109.46974 * 239.99975 * 2 1 3 25 25 H 1.08997 * 109.47013 * 120.00838 * 2 1 3 26 26 H 1.09001 * 109.47054 * 53.08411 * 4 3 2 27 27 H 1.08999 * 109.47558 * 173.08263 * 4 3 2 28 28 H 0.96992 * 119.99956 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47093 * 306.05128 * 13 3 2 30 30 H 1.08992 * 109.47219 * 186.04086 * 13 3 2 31 31 H 1.07999 * 125.89806 * 0.02562 * 15 14 13 32 32 H 1.08999 * 109.46939 * 269.97778 * 18 17 16 33 33 H 1.09000 * 109.46846 * 29.97762 * 18 17 16 34 34 H 1.09001 * 109.46695 * 149.97569 * 18 17 16 35 35 H 1.08999 * 109.47469 * 90.01709 * 20 19 17 36 36 H 1.08996 * 109.47005 * 210.02307 * 20 19 17 37 37 H 1.09004 * 109.47296 * 330.01821 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5786 2.0994 -1.2053 5 6 2.2476 1.5021 -2.4164 6 1 2.9928 0.7298 -2.2957 7 6 1.9083 1.9416 -3.6785 8 7 1.0012 2.8825 -3.8253 9 14 2.7380 1.2018 -5.1796 10 1 1.9576 0.0286 -5.6487 11 1 2.8027 2.2178 -6.2606 12 1 4.1136 0.7705 -4.8227 13 6 1.5969 2.0928 1.2159 14 6 2.2679 1.4752 2.4156 15 6 1.6906 0.5584 3.3003 16 7 2.5779 0.2573 4.2134 17 7 3.7513 0.9700 3.9354 18 6 4.9929 0.9228 4.7117 19 6 3.5362 1.7077 2.8261 20 6 4.5287 2.6295 2.1657 21 1 -0.3633 0.5121 0.8910 22 1 -0.3634 0.5155 -0.8890 23 1 -0.3633 -1.0277 -0.0019 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5140 0.8899 26 1 0.4970 2.0087 -1.3060 27 1 1.8488 3.1521 -1.1230 28 1 0.7628 3.1920 -4.7131 29 1 0.5151 2.0144 1.3243 30 1 1.8797 3.1428 1.1419 31 1 0.6848 0.1692 3.2419 32 1 4.9664 1.6893 5.4862 33 1 5.0946 -0.0586 5.1750 34 1 5.8413 1.1026 4.0513 35 1 5.1028 2.0741 1.4240 36 1 3.9970 3.4458 1.6769 37 1 5.2044 3.0354 2.9186 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269043253.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:52 Heat of formation + Delta-G solvation = 57.211182 kcal Electronic energy + Delta-G solvation = -17212.913030 eV Core-core repulsion = 14605.202775 eV Total energy + Delta-G solvation = -2607.710255 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.19886 -38.72373 -34.81698 -34.22326 -33.22227 -30.96540 -29.83741 -27.69266 -27.45427 -25.42676 -24.75111 -21.87346 -21.23449 -19.83996 -18.29672 -17.24717 -16.89897 -16.61485 -16.26132 -15.75886 -15.23558 -14.82891 -14.42606 -14.27748 -13.92817 -13.78287 -13.44755 -13.26411 -13.06559 -13.05035 -12.82711 -12.65873 -12.56652 -12.46730 -12.29166 -11.85079 -11.59491 -11.32072 -11.13555 -10.53878 -10.07968 -9.21298 -8.75203 -8.12501 -6.21287 0.97668 1.43469 1.43816 1.55268 1.73425 1.85611 2.45275 3.19579 3.62413 3.69166 3.90720 4.21319 4.34839 4.42373 4.45962 4.46893 4.56448 4.62564 4.68027 4.74350 4.78892 4.84188 5.03755 5.07077 5.09215 5.17232 5.31805 5.42709 5.45782 5.59043 5.73965 5.77330 6.17441 6.23469 6.49899 6.78711 6.81872 6.96712 7.47898 8.97325 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.033848 B = 0.006101 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.034530 B = 4588.161361 C = 4933.617138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.071 3.929 3 N -0.533 5.533 4 C 0.203 3.797 5 C -0.513 4.513 6 H 0.057 0.943 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.961 3.039 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.267 1.267 13 C 0.134 3.866 14 C -0.241 4.241 15 C 0.050 3.950 16 N -0.331 5.331 17 N -0.381 5.381 18 C 0.093 3.907 19 C 0.100 3.900 20 C -0.082 4.082 21 H 0.060 0.940 22 H 0.034 0.966 23 H 0.068 0.932 24 H 0.052 0.948 25 H 0.067 0.933 26 H -0.020 1.020 27 H 0.000 1.000 28 H 0.262 0.738 29 H 0.035 0.965 30 H 0.063 0.937 31 H 0.190 0.810 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.260 -2.628 14.596 16.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.058 4.058 3 N -0.257 5.257 4 C 0.077 3.923 5 C -0.552 4.552 6 H 0.075 0.925 7 C -0.194 4.194 8 N -0.575 5.575 9 Si 0.787 3.213 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.191 1.191 13 C 0.006 3.994 14 C -0.253 4.253 15 C -0.135 4.135 16 N -0.152 5.152 17 N -0.164 5.164 18 C -0.047 4.047 19 C -0.029 4.029 20 C -0.140 4.140 21 H 0.079 0.921 22 H 0.053 0.947 23 H 0.087 0.913 24 H 0.071 0.929 25 H 0.085 0.915 26 H -0.003 1.003 27 H 0.018 0.982 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.207 0.793 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.124 0.876 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.090 -3.228 15.622 17.456 hybrid contribution -1.088 0.305 -1.759 2.090 sum 6.002 -2.924 13.863 15.387 Atomic orbital electron populations 1.22255 0.98411 1.01978 1.00967 1.21799 0.92833 0.90650 1.00481 1.62256 1.59535 1.02339 1.01532 1.19426 0.93001 0.92555 0.87298 1.21428 1.21769 1.20754 0.91230 0.92506 1.25799 0.95897 0.95630 1.02040 1.70077 1.33410 1.30399 1.23627 0.85502 0.79099 0.78009 0.78717 1.20171 1.20862 1.19109 1.20198 0.96014 0.96430 0.86800 1.19763 0.95621 1.07997 1.01892 1.23919 0.99852 0.96988 0.92741 1.77200 0.93232 1.19899 1.24913 1.48677 1.11981 1.34036 1.21713 1.22137 0.81122 1.04954 0.96456 1.21166 0.96533 0.96172 0.89026 1.20419 0.96440 0.97005 1.00137 0.92088 0.94696 0.91337 0.92942 0.91513 1.00251 0.98236 0.92904 0.94728 0.91841 0.79327 0.89353 0.88938 0.87571 0.90252 0.90423 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.47 9.26 71.98 0.67 -5.80 16 2 C 0.07 2.81 5.70 86.31 0.49 3.30 16 3 N -0.53 -22.92 4.69 -905.38 -4.24 -27.16 16 4 C 0.20 10.67 4.52 85.56 0.39 11.06 16 5 C -0.51 -28.94 8.40 25.60 0.22 -28.72 16 6 H 0.06 3.19 7.36 -2.91 -0.02 3.17 16 7 C 0.00 0.23 5.46 84.65 0.46 0.69 16 8 N -0.93 -55.98 13.29 21.45 0.28 -55.69 16 9 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 13 C 0.13 4.92 4.92 85.56 0.42 5.34 16 14 C -0.24 -7.83 4.68 -20.14 -0.09 -7.92 16 15 C 0.05 1.54 11.25 85.24 0.96 2.49 16 16 N -0.33 -10.21 12.57 -57.02 -0.72 -10.93 16 17 N -0.38 -10.14 4.01 -356.02 -1.43 -11.56 16 18 C 0.09 1.47 11.09 127.77 1.42 2.89 16 19 C 0.10 2.88 6.93 41.40 0.29 3.17 16 20 C -0.08 -1.94 9.69 71.23 0.69 -1.25 16 21 H 0.06 2.00 6.34 -2.39 -0.02 1.99 16 22 H 0.03 1.50 6.29 -2.39 -0.02 1.48 16 23 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 24 H 0.05 2.30 6.98 -2.39 -0.02 2.29 16 25 H 0.07 2.45 6.64 -2.39 -0.02 2.44 16 26 H -0.02 -1.14 6.01 -2.39 -0.01 -1.15 16 27 H 0.00 -0.02 7.91 -2.39 -0.02 -0.04 16 28 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 29 H 0.03 1.25 6.08 -2.39 -0.01 1.24 16 30 H 0.06 2.35 7.27 -2.39 -0.02 2.33 16 31 H 0.19 4.92 8.06 -2.91 -0.02 4.90 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.11 1.22 7.66 -2.39 -0.02 1.20 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.08 2.02 7.37 -2.39 -0.02 2.00 16 37 H 0.09 1.53 7.72 -2.38 -0.02 1.52 16 Total: -1.00 -67.63 299.87 2.87 -64.76 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 1.05 Total: 8.90 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 5.90 Total: -14.76 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -6.10 Total: -105.35 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -67.63 2.87 -64.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269043253.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.969 kcal (2) G-P(sol) polarization free energy of solvation -67.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds