Wall clock time and date at job start Sun Mar 29 2020 21:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47371 * 2 1 4 4 C 1.36943 * 119.99984 * 269.42188 * 3 2 1 5 5 H 1.08000 * 119.99606 * 326.02484 * 4 3 2 6 6 C 1.38808 * 120.00119 * 146.03159 * 4 3 2 7 7 N 1.31618 * 120.00182 * 336.62602 * 6 4 3 8 8 Si 1.86803 * 120.00088 * 156.63121 * 6 4 3 9 9 H 1.48497 * 109.46811 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47530 * 119.99681 * 8 6 4 11 11 H 1.48503 * 109.46810 * 239.99903 * 8 6 4 12 12 C 1.46500 * 120.00164 * 89.41685 * 3 2 1 13 13 C 1.50698 * 109.47350 * 90.00223 * 12 3 2 14 14 C 1.39865 * 126.03744 * 90.02472 * 13 12 3 15 15 N 1.30840 * 108.20277 * 179.97438 * 14 13 12 16 16 N 1.40089 * 108.20240 * 0.02562 * 15 14 13 17 17 C 1.46498 * 126.03365 * 179.97438 * 16 15 14 18 18 C 1.53002 * 109.46993 * 95.00108 * 17 16 15 19 19 C 1.53002 * 109.47052 * 214.99680 * 17 16 15 20 20 C 1.34941 * 107.92518 * 359.97438 * 16 15 14 21 21 H 1.09002 * 109.46799 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46951 * 299.99672 * 1 2 3 23 23 H 1.08996 * 109.46989 * 60.00135 * 1 2 3 24 24 H 1.09007 * 109.47066 * 239.99770 * 2 1 3 25 25 H 1.09005 * 109.47635 * 120.00337 * 2 1 3 26 26 H 0.96996 * 120.00502 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.46952 * 329.99953 * 12 3 2 28 28 H 1.09001 * 109.47333 * 210.00477 * 12 3 2 29 29 H 1.08005 * 125.90455 * 359.71959 * 14 13 12 30 30 H 1.08990 * 109.47546 * 335.00188 * 17 16 15 31 31 H 1.09004 * 109.47029 * 59.99593 * 18 17 16 32 32 H 1.08997 * 109.47570 * 179.97438 * 18 17 16 33 33 H 1.08997 * 109.47275 * 299.99439 * 18 17 16 34 34 H 1.08999 * 109.47299 * 60.00368 * 19 17 16 35 35 H 1.08998 * 109.47391 * 180.02562 * 19 17 16 36 36 H 1.09004 * 109.47221 * 300.00560 * 19 17 16 37 37 H 1.08005 * 126.12745 * 180.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2579 2.0227 -1.1859 5 1 2.6249 1.4668 -2.0360 6 6 2.0292 3.3875 -1.2953 7 7 1.1846 3.9808 -0.4786 8 14 2.9201 4.3821 -2.6017 9 1 3.8084 3.4866 -3.3853 10 1 1.9264 5.0112 -3.5082 11 1 3.7341 5.4391 -1.9495 12 6 2.2504 2.0761 1.2686 13 6 3.6694 1.8408 1.7181 14 6 4.7761 2.6342 1.3984 15 7 5.8312 2.1134 1.9706 16 7 5.4287 0.9702 2.6731 17 6 6.2989 0.0881 3.4548 18 6 6.2654 0.5109 4.9248 19 6 5.8080 -1.3555 3.3280 20 6 4.0981 0.8249 2.5024 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.0245 4.9343 -0.5552 27 1 1.5623 1.6946 2.0230 28 1 2.0847 3.1449 1.1331 29 1 4.7628 3.5210 0.7821 30 1 7.3197 0.1591 3.0795 31 1 5.2444 0.4400 5.3001 32 1 6.9124 -0.1455 5.5066 33 1 6.6151 1.5393 5.0152 34 1 5.8318 -1.6567 2.2808 35 1 6.4551 -2.0117 3.9100 36 1 4.7871 -1.4264 3.7033 37 1 3.4849 0.0387 2.9177 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271152101.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:59 Heat of formation + Delta-G solvation = 91.354837 kcal Electronic energy + Delta-G solvation = -17310.919789 eV Core-core repulsion = 14704.690115 eV Total energy + Delta-G solvation = -2606.229675 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.50753 -36.05718 -35.20772 -31.71966 -30.48725 -29.60248 -28.22667 -27.36837 -25.26962 -23.48444 -22.10928 -20.50118 -19.47029 -19.30062 -16.79161 -15.99063 -14.97854 -14.63001 -14.38769 -13.95126 -13.70783 -13.63009 -12.87323 -12.73715 -12.41306 -12.29136 -12.04403 -11.93098 -11.69454 -11.38781 -11.11476 -11.05034 -10.94773 -10.61988 -10.38195 -10.11414 -9.90114 -9.74228 -9.57954 -8.68006 -8.40459 -7.53913 -6.52595 -5.70170 -3.20768 2.59017 3.03465 3.41330 3.50870 3.54330 3.70430 4.58231 4.60788 4.89541 5.04625 5.32086 5.38313 5.41545 5.55119 5.59298 5.66264 5.76039 5.82384 6.05343 6.06951 6.17197 6.38428 6.44450 6.51777 6.56929 6.71514 6.92062 7.03395 7.15709 7.31970 7.50411 7.69627 7.86772 7.91891 8.46318 8.61561 9.28629 9.93032 10.49696 11.30818 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.025175 B = 0.007858 C = 0.006589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.949274 B = 3562.234363 C = 4248.493638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 N -0.579 5.579 4 C -0.245 4.245 5 H 0.058 0.942 6 C 0.009 3.991 7 N -0.887 5.887 8 Si 0.888 3.112 9 H -0.278 1.278 10 H -0.291 1.291 11 H -0.287 1.287 12 C 0.207 3.793 13 C -0.208 4.208 14 C 0.066 3.934 15 N -0.318 5.318 16 N -0.382 5.382 17 C 0.160 3.840 18 C -0.162 4.162 19 C -0.162 4.162 20 C 0.032 3.968 21 H 0.028 0.972 22 H 0.043 0.957 23 H 0.054 0.946 24 H 0.038 0.962 25 H 0.029 0.971 26 H 0.253 0.747 27 H 0.027 0.973 28 H 0.106 0.894 29 H 0.174 0.826 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.250 -8.252 9.057 13.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.019 3.981 3 N -0.298 5.298 4 C -0.375 4.375 5 H 0.076 0.924 6 C -0.191 4.191 7 N -0.531 5.531 8 Si 0.718 3.282 9 H -0.203 1.203 10 H -0.219 1.219 11 H -0.214 1.214 12 C 0.080 3.920 13 C -0.221 4.221 14 C -0.120 4.120 15 N -0.140 5.140 16 N -0.167 5.167 17 C 0.057 3.943 18 C -0.221 4.221 19 C -0.220 4.220 20 C -0.113 4.113 21 H 0.047 0.953 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.057 0.943 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.124 0.876 29 H 0.191 0.809 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.519 -8.087 9.307 14.442 hybrid contribution -0.447 0.466 -0.829 1.050 sum 7.072 -7.622 8.478 13.416 Atomic orbital electron populations 1.22293 0.99834 0.98191 1.01907 1.20801 0.91750 0.87761 0.97832 1.43871 1.74027 1.09797 1.02150 1.19057 1.36575 0.91297 0.90601 0.92423 1.24979 0.97526 0.98464 0.98090 1.69983 1.32965 1.10089 1.40066 0.86447 0.79738 0.80364 0.81636 1.20254 1.21852 1.21370 1.19391 0.85492 1.01807 0.85356 1.21525 1.00641 0.96920 1.03061 1.23732 0.90119 1.00025 0.98130 1.77187 1.23908 0.99017 1.13852 1.48579 1.05831 1.21634 1.40624 1.21007 0.94441 0.88174 0.90671 1.22227 1.02716 1.02366 0.94768 1.22160 1.02354 0.94286 1.03229 1.22102 0.85058 1.01141 1.02954 0.95290 0.93822 0.92681 0.94335 0.95278 0.93713 0.95486 0.87615 0.80904 0.88860 0.92039 0.91186 0.91856 0.91560 0.90672 0.91628 0.82603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 10.24 37.16 0.38 -2.87 16 2 C 0.14 3.08 6.39 -4.04 -0.03 3.06 16 3 N -0.58 -14.31 2.44 -174.60 -0.43 -14.73 16 4 C -0.25 -6.69 9.48 -15.06 -0.14 -6.83 16 5 H 0.06 1.61 7.93 -52.49 -0.42 1.19 16 6 C 0.01 0.24 4.94 -17.43 -0.09 0.15 16 7 N -0.89 -25.12 11.34 55.49 0.63 -24.49 16 8 Si 0.89 21.62 29.61 -169.99 -5.03 16.59 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 C 0.21 4.85 5.78 -5.19 -0.03 4.82 16 13 C -0.21 -4.43 5.68 -105.06 -0.60 -5.02 16 14 C 0.07 1.43 11.96 -17.37 -0.21 1.22 16 15 N -0.32 -6.48 12.58 30.63 0.39 -6.09 16 16 N -0.38 -6.59 3.53 -54.87 -0.19 -6.79 16 17 C 0.16 2.00 3.93 -67.93 -0.27 1.74 16 18 C -0.16 -1.72 9.52 37.16 0.35 -1.36 16 19 C -0.16 -1.64 8.83 37.16 0.33 -1.31 16 20 C 0.03 0.58 10.50 -17.23 -0.18 0.40 16 21 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 23 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 24 H 0.04 0.82 8.04 -51.93 -0.42 0.40 16 25 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 26 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 28 H 0.11 2.81 5.33 -51.93 -0.28 2.53 16 29 H 0.17 3.74 8.06 -52.48 -0.42 3.31 16 30 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.65 7.16 -51.93 -0.37 0.28 16 37 H 0.16 2.40 7.26 -52.48 -0.38 2.01 16 LS Contribution 309.57 15.07 4.67 4.67 Total: -1.00 -30.18 309.57 -6.51 -36.69 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.06 Total: 0.17 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -0.47 Total: -6.01 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.40 Total: -52.10 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.18 -6.51 -36.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271152101.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.048 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds